ISBN: 0521612306

TOC:

Preface;
1. Introduction
2. Pairwise alignment
3. Markov chains and hidden Markov models
4. Pairwise alignment using HMMs
5. Profile HMMs for sequence families
6. Multiple sequence alignment methods
7. Building phylogenetic trees
8. Probabilistic approaches to phylogeny
9. Transformational grammars
10. RNA structure analysis
11. Background on probability.

Paperback (also available in hardback), 360 pages, Publisher: Cambridge University Press; 1st edition (September 11, 2006)