ISMB 2008 Conference Schedule
As of June 23, 2008 - Schedule Subject to Change
METRO TORONTO CONVENTION CENTRE (MTCC) CONFERENCE TO BE HELD IN THE SOUTH BUILDING
METRO TORONTO CONVENTION CENTRE (MTCC) CONFERENCE TO BE HELD IN THE SOUTH BUILDING
Thursday, July 17
Friday, July 18
Saturday, July 19
Sunday, July 20
Monday, July 21
Tuesday, July 22
Wednesday, July 23
Friday, July 18
Saturday, July 19
Sunday, July 20
Monday, July 21
Tuesday, July 22
Wednesday, July 23
Thursday | July 17 | |||||||||||||
3:00 p.m.- 6:00 p.m. | Registration: 600 Level (all conference days) |
Friday | July 18 | ||||||
7:30 a.m.- 6:00 p.m. | Registration: | ||||||
Room: 701A | Room: 714A | Room: 714B | Room: 715A | Room: 716A | Room: 716B | Room: 715B | |
8:30 a.m.- 10:15 a.m. | 3Dsig (2 days) | AltSplicing (2 days) | BioPathways (2 days) | BOSC (2 days) | AFP-BioSapiens (2 days) | BioLINK(1 day) | Student Council Symposium 4 |
10:15 a.m.- 10:45 a.m. | Coffee Break (PreFunction Level 700) | ||||||
10:45 a.m.- 12:30 p.m. | 3Dsig | AltSplicing | BioPathways | BOSC | AFP-BioSapiens | BioLINK | SCS 4 |
12:30 p.m.- 1:30 p.m. | Lunch: Hall E | ||||||
1:30 p.m.- 3:30 p.m. | 3Dsig | AltSplicing | BioPathways | BOSC | AFP-BioSapiens | BioLINK | Student Council Symposium 4 |
3:30 p.m.- 4:00 p.m. | Coffee Break (PreFunction Level 700) | ||||||
4:00 p.m.- 6:30 p.m. | 3Dsig Sessions Ends 6:30 / Dinner at 7:30 p.m. at InterContinental Hotel (ticketed meal) | AltSplicing Ends 6:30 | BioPathways Ends 6:30 | BOSC Ends 6:30 | AFP-BioSapiens Ends 6:30 | BioLINK Ends 6:30 | SCS4 Ends 8:00 |
Saturday | July 19 | |||||||||||
7:30 a.m.- 6:00 p.m. | Registration: | |||||||||||
Room: 701A | Room: 714A | Room: 714B | Room: 715A | Room: 716A | Room: 716B | Room: 707 | Room: 713A | Room: 713B | Room: 715B | Room: 717A | Room: 717B | |
8:30 a.m.- 10:15 a.m. | 3Dsig (2 days) | AltSplicing (2 days) | BioPathways (2 days) | BOSC (2 days) | AFP-BioSapiens (2 days) | Next-Generation Sequencing (1 day) | Meeting Room - AFP Breakout | Tutorial AM1: PLoS Professional Development, Philip E. Bourne | Tutorial AM2: Computational Analyses and Biological Interpretation of ChIP-chip and ChIP-seq, X. Shirley Liu, Clifford A Meyer | Tutorial AM3: Computational Biology on Multi-Core Computer Systems, Kirk Jordan | Tutorial AM4: Identification of Biomedical Events and Relations in the literature with ontological suppor, Dietrich Rebholz-Schuhmann, Sophia Ananiadou, Jun'ichi Tsujii | Tutorial AM5: Introduction to Molecular Visualization, Conrad Huang, John “Scooter” Morris |
10:15 a.m.- 10:45 a.m. | Coffee Break (PreFunction Level 700) | |||||||||||
10:45 a.m.- 12:30 p.m. | 3Dsig | AltSplicing | BioPathways | BOSC | AFP-BioSapiens | Next-Generation Sequencing | Meeting Room | End 12:30 p.m. | End 12:30 p.m. | End 12:30 p.m. | End 12:30 p.m. | End 12:30 p.m. |
12:30 p.m.- 1:30 p.m. | Lunch: Hall E | |||||||||||
1:30 p.m.- 3:30 p.m. | 3Dsig | AltSplicing | BioPathways | BOSC | AFP-BioSapiens | Next-Generation Sequencing | Meeting Room | Tutorial PM6: Distances, Margins, Kernels: Machine Learning Concepts for Computational Biology, Stefan Kramer, Ulrich Rucker | Tutorial PM7: A structured approach for the engineering of biochemical network models, illustrated for signaling pathways, David Gilbert, Monika Heiner, Rainer Bretling, Robin Donaldson | Tutorial PM8: How to Make Useful Ontologies for Biomedicine, Barry Smith, Nigam Shah | Tutorial PM9: Making informed choices about microarray data analysis, Mark Reimers | Tutorial PM10: Introduction to non-coding RNA gene finding, Jan Gorodkin, Ivo Hofacker |
3:30 p.m.- 4:00 p.m. | Coffee Break (PreFunction Level 700) | |||||||||||
4:00 p.m.- 6:30 p.m. | 3Dsig Ends 6:30 | AltSplicing Ends 6:30 | BioPathways Ends 6:30 | BOSC Ends 6:30 | AFP-BioSapiens Ends 6:30 | Next-Generation Sequencing Ends 6:30 | Meeting Room | Tutorial Ends 6:30 | Tutorial Ends 6:30 | Tutorial Ends 6:30 | Tutorial Ends 6:30 | Tutorial Ends 6:30 |
5:30 p.m. | Orienteering Registration - Room 701B - MTCC, South Building | |||||||||||
6:00 p.m. | Orienteering Event | |||||||||||
8:00 p.m.- 10:00 p.m. | Opening Reception: InterContinental Toronto Centre - 225 Front Street |
Sunday | July 20 | ||||||||
7:30 a.m.- 7:30 p.m. | Registration: 600 Level | ||||||||
8:15 a.m.- 8:30 p.m. | Posters on Display - Hall E | ||||||||
Hall G | Room: 801 | Room: 718A | Room: 718B | Room: 701A | Room: 701B | Room: 714 | Room: 715 | Room: 803 | |
8:45 a.m.- 9:00 a.m. | Opening Welcome - Hall G | SIG TRACK Bio-Ontologies SIG (8:50 a.m.- 6:30 p.m.) | Visual Reflections in Science (VRS) | ||||||
9:00 a.m.- 10:00 a.m. | Keynote Presentation: Claire M. Fraser-Liggett, University of Maryland School of Medicine Microbial Communities in Health and Disease - Hall G | This SIG requires separate registration to attend | |||||||
10:00 a.m.- 10:45 a.m. | Coffee Break with Exhibitors - Hall F | ||||||||
Parallel Sessions | Proceedings Track (PT) | Proceedings Track (PT) | Highlights Track (HL) | Highlights Track (HL) | Special Session Track (SST) | Technology Track (TT) | Industry Track (IT) | ||
10:45 a.m.- 11:10 a.m. | PT01: Estimating True Evolutionary Distances under the DCJ Model. Yu Lin | PT02: Differential variability analysis of gene expression and its application to human diseases. Joshua Ho | HL01: Automated learning of generative models for subcellular location. Robert F Murphy, Ting Zhao | Special Session 01: Health and Diseases in our Genomes: Mining Genetic Variation Organizer, Thomas Hudson | TT01: GenoCAD: Computer Assisted Design of genetic constructs. Jean Peccoud | IT01: OpenFreezerTM: an information management system for reagent tracking and workflow automation. Marina Olhovsky | Bio-Ontologies SIG | ||
11:15 a.m.- 11:40 a.m. | PT03: Efficient Inference of Bacterial Strain Trees From Genome-scale Multi-locus Data. Cuong Than | PT04: Selecting anti-HIV Therapies Based on a Variety of Genomic and Clinical Factors. Michal Rosen-Zvi | HL03: Automatic derivation of function prediction from de novo structure prediction for whole genomes. Richard Bonneau | TT02: PredictProtein – Beyond Secondary Structure Prediction. Guy Yachdav, Laszlo Kajan | IT02: OmicsExplorer. Pei Hao | ||||
11:45 a.m.- 12:10 p.m. | PT05: The Multiple Gene Duplication Problem Revisited. Mukul S. Bansal | PT06: Reversible Jump MCMC Approach for Peak identification for Stroke SELDI Mass Spectrometry Using Mixture Model. Yuan Wang | HL05: Alternative Splicing and Protein Structure Evolution. Fabian Birzele | HL06: A network-based signaling mechanism of cancer developement and progression. Edwin Wang | TT03: The InterPro Protein Signature Database. Jennifer McDowall | ||||
12:15 p.m.- 12:40 p.m. | PT07: Assessment and Improvement of Plasmodium yoelii yoelii Genome Annotation through Comparative Analysis. Xinxia Peng | PT08: Assessing the Functional Structure of Genomic DataI. Curtis Huttenhower | HL07: Local pairwise structural RNA alignments by pruning the dynamical programming matrix. Jan Gorodkin | HL08: Universally Sloppy Parameter Sensitivities in Systems Biology. Christopher R. Myers | TT04: Reactome Pathway Database Demo. Gopal Gopinathrao | IT04: BONDplus – Challenges in Translational Medicine. Eric Andrade, Sam Sgro | |||
12:40 p.m.- 2:15 p.m. | Lunch - Hall E | Lunch - Hall E | |||||||
12:40 p.m.- 2:00 p.m. | ISCB Open Business Meeting (lunch provided at meeting)- Room 801 Download Agenda Here | ||||||||
1:00 p.m.- 2:15 p.m. | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | ||||
Parallel Sessions | Proceedings Track (PT) | Proceedings Track (PT) | Highlights Track (HL) | Highlights Track (HL) | Special Session Track (SST) | Technology Track (TT) | Industry Track (IT) | SIG TRACK Bio-Ontologies SIG | Visual Reflections in Science |
2:15 p.m.- 2:40 p.m. | PT09: MACHOS: Markov Clusters of Homologous Subsequences. Simon Wong | PT10: Identifying Functional Modules in Protein-Protein Interaction Networks: An Integrated Exact Approach. Gunnar W. Klau | HL09: Computational Approaches for the Analysis of Immunoglobulin Gene Rearrangement. Bruno A Gaeta | HL10: Heat Shock Response in CHO Mammalian Cells Is Controlled by a Nonlinear Stochastic Process. Ovidiu Lipan | Special Session 2: Frontiers in cell imaging: Automated image analysis Organizer: Robert F. Murphy | TT05: EMBRACE-Enabling Data Integration. Syed Haider | IT05: Next Generation of Selected Bioinformatics Applications: Using Massively Parallel Supercomputers. Carlos P. Sosa | Bio-Ontologies SIG Concluding at 6:30 p.m. | |
2:45 p.m.- 3:10 p.m. | PT11: Classification and Feature Selection Algorithms for Multi-class CGH DataI. Jun Liu | PT12: Prediction of Drug-target Interaction Networks from the Integration of Chemical and Genomic Spaces. Yoshihiro Yamanishi | HL11: Predicting Protein Function with Hierarchical Phylogenetic Profiles. Corin Yeats | TT06: PIR Resources for Protein Knowledge Discovery. Zhang-Zhi Hu, Anastasia Nikolskaya | IT06: Beyond Next Gen Sequencing: Applying Bioinformatics to Obtain Biological Answers. Arif Anwar | ||||
3:15 p.m.- 3:40 p.m. | PT13: A High Accurate Model of the Individual Haplotyping Problem Based on Weighted SNP Fragments and Genotype with Errors. Minzhu Xie | PT14: Biomolecular Network Motif Counting and Discovery by Color Coding. Iman Hajirasouliha | HL13: Automated Protein Subfamily Identification and Classification. Kimmen Sjolander | HL14: De Novo identification of in Vivo Binding Sites from ChIP-chip Data. Victor X Jin | TT07: Fiesta: An Interactive Sequence Management and Analysis Framework. Kannan Vijayan and Dustin Cram | IT07: Drug Discovery. Greg Tucker-Kellogg | |||
3:45 p.m.- 4:10 p.m. | PT15: Guided Genome Halving: Hardness, Heuristics and the History of the Hemiascomycetes. Chunfang Zheng | PT16: Protein Complex Identification by Supervised Graph Local Clustering. Yanjun Qi | HL16: SherLoc: High-accuracy Prediction of Protein Subcellular Localization by Integrating Text and Protein Sequence Data. Hagit Shatkay | TT08: VisANT: an integrative platform for multiple-scale visualization and modeling of biological networks/pathways. Zhenjun Hu |
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4:15 p.m.- 4:45 p.m. | Coffee Break with Exhibitors - Hall F | ||||||||
4:45 p.m.- 5:45 p.m. | Keynote Presentation: David Jaffe, Broad Institute of MIT and Harvard Tiny bits and pieces: new sequencing technologies and what they can do for you | ||||||||
5:45 p.m.- 8:30 p.m. | Poster Session with Authors (Odd Numbers) & Reception - Hall E |
Monday | July 21 | ||||||||
7:30 a.m.- 7:30 p.m. | Registration: 600 Level | ||||||||
8:15 a.m.- 8:30 p.m. | Posters on Display - Hall E | ||||||||
Hall G | Room: 801 | Room: 718A | Room: 718B | Room: 701A | Room: 701B | Room: 714 | Room: 715 | Room: 803 | |
8:45 a.m.- 9:00 a.m. | Morning Welcome, ISMB/ECCB 2009 Promotion - Hall G | Visual Reflections in Science | |||||||
9:00 a.m.- 9:10 a.m. | Keynote Presentation: Eugene W. Myers, HHMI Janelia Farm Research Campus, Imaging Bioinformatics - Hall G | ||||||||
10:00 a.m.- 10:45 a.m. | Coffee Break with Exhibitors - Hall F | SIG TRACK Post Encode SIG (10:10 AM - 5:00 PM) This SIG requires separate registration to attend |
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Parallel Sessions | Proceedings Track (PT) | Proceedings Track (PT) | Highlights Track (HL) | Highlights Track (HL) | Special Session Track (SST) | Technology Track (TT) | Technology Track (TT) | Visual Reflections in Science | |
10:45 a.m.- 11:10 a.m. | PT17: Annotation-based Inference of Transporter Function. Peter Karp | PT18: HMM PSSM Compostion-specific gap Position-specific Gap . Yi-Kuo Yu | HL17: Towards Ontology-driven Navigation of the Lipid Bibliosphere and Mutation Literature. Christopher J. O. Baker | HL18: The Utilization of Redundancy by Genetic Networks. Ran Kafri | Special Session 3: Interaction Networks and Disease Organizers: Shoshana Wodak, Gary Bader | TT09: The Subcellular Location Image Finder - Extracting Information from Text and Images in Biological Journal Articles. Robert F. Murphy | TT10: Dominating the Next Generation Sequencing Data Analysis Challenge, Thomas Knudsen (session to 11:40 a.m.) | ||
11:15 a.m.- 11:40 a.m. | PT19: Detection of IUPAC and IUPAC-like Chemical Names. Roman Klinger | PT20: ProSOM: Core Promoter Prediction Based on Unsupervised Clustering of DNA Physical Profiles. Thomas Abeel | HL19: Toward the Demise of the Highest Scoring Paradigm. Charles E. Lawrence | HL20: Casting a Net for Kinases - Systematic Discovery of Cellular Phosphorylation Networks. Rune Linding | TT11: CiteXplore, Whatizit et al: Latest Innovations in EBI's Literature Infrastructure. Dietrich Rebholz-Schuhmann, M. Rijnbeek | ||||
11:45 a.m.- 12:10 p.m. | PT21: Identifying Gene-Disease Associations Using Centrality on a Literature Mined Gene Interaction Network. Arzucan Ozgur | PT22: Optimal pooling for Genome Re-sequencing with Ultra-high-throughput Short-read Ttechnologies. Fereydoun Hormozdiari | HL21: Modelling Ion Channel Kinetics Using Voltage-Clamp Recordings and a Genetic Algorithm. Meron Gurkiewicz | HL22: A Systems Biology Analysis of the Drosophila Phagosome. Joel Bader | TT13: CAMERA: Tools and Data for Metagenomics. Iddo Friedberg, Weizhong Li | TT14: BONDplus, BINDplus and GENESEQ. Eric Andrade and Sam Sgro (session to 12:40 p.m.) | |||
12:15 p.m.- 12:40 p.m. | PT23: Integrating High Dimensional Bi-directional Parsing Models for Gene Mention Tagging. Chun-Nan Hsu | PT24: POIMs: Positional Oligomer Importance Matrices --- Understanding Support Vector Machine Based Signal Detectors Sequence Analysis and Alignment. Soeren Sonnenburg | HL23: Qualitative Biological Ontologies. Thomas Bittner | HL24: eQED: an Efficient Method for Interpreting eQTL Associations Using Protein Networks. Andreas Beyer | TT15: InterMine – Open Source Data Warehouse and Query Interface. Richard Smith | ||||
12:40 p.m.- 2:15 p.m. | Lunch - Hall E | ||||||||
12:40 p.m.- 2:00 p.m. | ISCB Student Council Open Meeting - Room 801 (lunch should be brought to the room by attending delegates) | ||||||||
1:00 p.m.- 2:15 p.m. | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Lunch - Hall E | |||
Parallel Sessions | Proceedings Track (PT) | Proceedings Track (PT) | Highlights Track (HL) | Highlights Track (HL) | Special Session Track (SST) | Technology Track (TT) | Technology Track (TT) | SIG TRACK Post-Encode SIG | Visual Reflections in Science |
2:15 p.m.- 2:40 p.m. | PT25: The EXACT Description of Biomedical Protocols. Wayne Aubrey | PT26: Efficient Algorithms for Exact Hierarchical Clustering of Huge Datasets: Tackling the Entire Protein Space. Yaniv Loewenstein | HL25: High-confidence Prediction of Global Interactomes Based on Genome-wide Coevolutionary Networks. David Juan | HL26: Growth-specific Programs of Gene Expression. Curtis Huttenhower | Special Session 4: Structural Bioinformatics: Deciphering the proteome, Organizers: Igor Jurisica, Ryan Lilien | TT16: Multiplierz and the mzAPI: A Common API and Desktop Environment for Mass Spectrometry Based Proteomics. Manor Askenazi | TT17: Working with the NCBC’s: Integration Tools and Data, NCIBI Suite of Tools. James Cavalcoli | ||
2:45 p.m.- 3:10 p.m. | PT27: Towards the use of Argumentation in Bioinformatics: A Gene Expression Case Study. Kenneth McLeod | PT28: MiRNA Prediction with a Novel Ranking Algorithm Based on Random Walks. Xuefeng Zhou | HL27: Using Conserved Protein Interactions Across Eukaryotes to Construct a Predicted Plant Interactome. Matt Geisler | HL28: Allostery: Absence of a Change in Shape Does not Imply That Allostery is Not at Play. Antonio del Sol | TT18: How to use Bio2RDF with a Virtuoso Server. François Belleau | TT19: MAGNet: Integrating Tools and Data. Aris Floratos | |||
3:15 p.m.- 3:40 p.m. | PT29: The Ontology of Biological Taxa. Stefan Schulz | PT30 A Robust Framework for Detecting Structural Variations in a GenomeI. Seunghak Lee | HL29: Off Targets for Some Major Pharmaceuticals and Their Implications. Philip Bourne | HL30: Binding Site Sequence Does not Determine Function – but Position Can Help. John L Spouge | TT20: Pathway Tools Software: Regulatory Networks and Recent Developments. Peter Karp | TT21: Simbios: Fast Molecular Dynamics Calculations on your Laptop. Jeanette Schmidt | |||
3:45 p.m.- 4:10 p.m. | PT31: GenoQuery: A New Querying Module for Functional Annotation in a Genomic Warehouse. Frederic Lemoine | PT32: A Max-margin Model for Efficient Simultaneous Alignment and Folding of RNA Sequences. Chuong Do | HL31: Evolution of Cellular Interaction Networks. Pedro Beltrao | HL32: A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast. Raluca M Gordan | TT22: Chipster - User Friendly Analysis Tool for DNA Microarray Data. Eija Korpelainen | TT23: i2b2 | Post-Encode SIG | ||
4:15 p.m.- 4:45 p.m. | Coffee Break with Exhibitors - Hall F | ||||||||
4:45 p.m.- 5:45 p.m. | Introduction of Keynote 4: ISCB Overton Prize Lecture: Aviv Regev, Broad Institute of MIT and Harvard - Hall G | ||||||||
5:45 p.m.- 8:30 p.m. | Poster Session with Authors (Even Numbers) & Reception - Hall E |
Tuesday | July 22 | |||||||
7:30 a.m.- 6:00 p.m. | Registration: 600 Level | |||||||
8:15 a.m.- 5:00 p.m. | Posters on Display - Hall E | |||||||
Hall G | Room: 801 | Room: 718A | Room: 718B | Room: 701A | Room: 701B | Room 714 | Room: 803 | |
8:45 a.m.- 9:00 a.m. | Morning Welcome - Hall G | Visual Reflections in Science | ||||||
9:00 a.m.- 10:00 a.m. | Keynote Presentation: Morag Park, McGill Unviersity, Profiling the Breast Tumor Microenvironment | |||||||
10:00 a.m.- 10:45 a.m. | Coffee Break with Exhibitors - Hall F | |||||||
Parallel Sessions | Proceedings Track (PT) | Proceedings Track (PT) | Highlights Track (HL) | Highlights Track (HL) | Special Session Track (SST) | Technology Track (TT) | Technology Track (TT) | Visual Reflections in Science |
10:45 a.m.- 11:10 a.m. | PT33: Designing Succinct Structural Alphabets. Shuai Cheng Li | PT34: Alignment and Classification of Time Series Gene Expression in Clinical Studies. Tien-ho Lin | HL33: Structural Reorganisation and Potential Toxicity of Oligomeric Species Formed during the Assembly of Amyloid Fibrils. Giorgio Favrin | Special Session 5: Sequencing thousands of human genomes - perspectives, challenges, and analysis, Organizers: Francisco De La Vega, Gabor Marth | TT24: NMPDR: National Microbial Pathogen Data Resource. Leslie McNeil | TT32: Pathway Ontology for Analysis of High-throughput Data: Anton Yuryev, Ariadne Genomics, US | ||
11:15 a.m.- 11:40 a.m. | PT35: Predicting Protein Thermostability Changes from Sequence Upon Multiple Mutations. Ludovica Montanucci | PT36: Inferring Differentiation Pathways from Gene Expression. Ivan Gesteira Costa | HL35: Pathway-based Diagnosis of Cancer and Metastasis. Han-Yu Chuang | HL36: Association Analysis-based Transformations for Protein Interaction Networks: A Function Prediction Case Study. Gaurav Pandey | TT25: MG-RAST Rapid Meta-genome Annotation Server. Leslie McNeil | |||
11:45 a.m.- 12:10 p.m. | PT37: Algorithm for Backrub Motions in Protein Design. Ivelin Georgiev | PT38: Predicting functional transcription factor binding through alignment-free, affinity-based analysis of orthologous promoter sequences. Lucas Ward | HL37: Integration of Genome-wide Experiments to Find Genes Associated with Complex Polygenic Disorders: Fighting Back Against the Limitations of GWAS. Atul Butte | HL38: Unraveling Protein Networks with Power Graph Analysis. Loïc Alain Royer | TT26: RAST Rapid Microbial Genome Annotation server. Leslie McNeil | TT33: EB-eye – The EMBL-EBI search engine, Franck Valentin | ||
12:15 p.m.- 12:40 p.m. | PT39: A Computational Framework to Empower Probabilistic Protein Design. Menachem Fromer | PT40: Combinatorial Influence of Environmental Parameters on Transcription Factor Activity. Theo Knijnenburg | HL39: Combined Analysis Reveals a Core Set of Cycling Genes. Yong Lu | HL40: A Global Analysis of Genetic Interactions in Caenorhabditis Elegans. Matthew T. Weirauch | TT27: A database of Chemical Entities of Biological Interest. Ana Paula de Matos | TT34: Chimera. Scooter Morris | ||
12:40 p.m.- 2:15 p.m. | Lunch - Hall E | |||||||
1:00 p.m.- 2:15 p.m. | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | Birds of a Feather Flock Together | |||
Parallel Sessions | Proceedings Track (PT) | Proceedings Track (PT) | Highlights Track (HL) | Highlights Track (HL) | Special Session Track (SST) | Technology Track (TT) | ||
2:15 p.m.- 2:40 p.m. | PT41: Nucleosome Positioning from Tiling Microarray Data. Moran Yassour | PT42: A Maximum Common Substructure-Based Algorithm for Searching and Predicting Drug-Like Compounds. Yiqun Cao | HL41: Organization and Evolution of Primate Centromeric DNA from Whole Genome Shotgun Sequence Data. Can Alkan | HL42: Life Works on AC Power. Andrey Ptitsyn | Special Session 6: Computational Challenges and Opportunities in Host-Pathogen Systems Biology, Organizers: T. M. Murali, Matthew D. Dyer | TT28: Designing, Executing, Reusing and Sharing Workflows: Taverna and myExperiment Supporting the in silico Experiment Life Cycle. Katy Wolstencroft | ||
2:45 p.m.- 3:10 p.m. | PT43: Multi-Spectra Peptide Sequencing and its Applications to Multistage Mass Spectrometry. Nuno Bandeira | PT44: Contact Replacement for NMR Resonance AssignmentI. Fei Xiong | HL43: Graph-theory Meets Evolutionary Biology: Reticulate Classification of Prokaryotic Mobile Genetic Elements. Gipsi Lima-Mendez | HL44: A Systems Approach to Delineate Functions of Paralogous Transcription FactorsI. Kai Tan | TT29: EBI Web Services APIs for Data-retrieval and Analysis. Franck Valentin | |||
3:15 p.m.- 3:40 p.m. | PT45: Modelling peptide fragmentation with dynamic Bayesian networks for peptide identification. Aaron Klammer | PT46: Classification of arrayCGH Data Using a Fused SVM. Franck Rapaport | HL45: Discovering Common Sequence Variation in Arabidopsis thalianaI. Ratsch Gunnar | HL46: Genome-wide Transcriptional Analysis of the Human Cell Cycle Identifies Genes Differentially Regulated in Normal and Cancer Cells. Ziv Bar-Joseph | TT30: Galaxy Workflows: Enabling Complex Computational Analysis For Experimental Biologists. James Taylor | |||
3:45 p.m.- 4:10 p.m. | PT47: BLASTing Small Molecules - Statistics and Extreme Statistics of Chemical Similarity Scores. Pierre Baldi | PT48: Matching Isotopic Distributions from Metabolically Labeled Samples. Sean McIlwain | HL47: A Phylogenomic Study of Human, Dog and Mouse. Gina M. Cannarozzi | HL48: High-resolution Timing of Cell Cycle-regulated Gene Expression. Andrzej S. Kudlicki | TT31: New GALAXY Tools. Anton Nekrutenko | |||
4:15 p.m.- 4:45 p.m. | Coffee Break with Exhibitors - Hall F | |||||||
4:45 p.m.- 5:45 p.m. | Keynote Presentation: Bernhard Ø. Palsson, University of California, Systems Biology: an era of reconstruction and interrogation - Hall G | |||||||
6:00 p.m. | Offsite event - Departs MTCC - South Building Ground Level entrance to Liberty Grand Venue |
Wednesday | July 23 | |||||||||
7:30 a.m.- 3:30 p.m. | Registration: 600 Level | |||||||||
8:15 a.m.- 2:30 p.m. | Posters on Display - Hall E | |||||||||
Hall G | Room: 801 | Room: 718A | Room: 718B | Room: 701A | Room: 701B | Room: 714 | Room: 715 | Room: 802 | Room: 803 | |
8:45 a.m.- 9:00 a.m. | Morning Welcome - Hall G | |||||||||
9:00 a.m.- 10:00 a.m. | Keynote Presentation: Hanah Margalit, The Hebrew University of Jerusalem, Intriguing roles for small non-coding RNAs in the cellular regulatory networks | |||||||||
10:00 a.m.- 10:45 a.m. | Coffee Break with Exhibitors - Hall F | Workshop Workshop 2: CytoScape Workshop, Gary Bader, Shoshana Wodak 10:00am-11:15am Cytoscape: An Open-Source Platform for Network Analysis and Visualization 11:15am-11:30am A Cytoscape Plugin to Access the MiMI Molecular Interactions 11:30am-11:45am GenePro: a Cytoscape Plug-in for Advanced Visualization and Analysis of Interaction Network 11:45am-12:00pm Interactive analysis of metabolic pathways, their enzymes and metabolites |
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Parallel Sessions | Highlights Track (HL) | Highlights Track (HL) | Highlights Track (HL) | Highlights Track (HL) | Special Session Track (SST) | Funding Opportunities & Activities Session | Workshop | Workshop | Visual Reflections in Science | |
10:45 a.m.- 11:10 a.m. | HL49: Transducers: a Unified Framework for Alignment, Phylogeny, Annotation, Reconstruction, Parameter Estimation and Simulating Evolution. Ian Holmes | HL50: Accurate Multiple Sequence and Structural Alignment of Distantly Related Proteins. Jimin Pei | HL51: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations. Chakra S. Chennubhotla | HL52: Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites. Boris E Shakhnovich | Special Session 7: Future of Scientific Publishing, Organizer: Scott Markel | FS1: Funding Opportunities & Activities of the US NIH/NIGMS, Karin Remington | Workshop 1: GenePattern Workshop, Ted Liefeld (10:45 a.m. - 12:40 p.m.) | Workshop 3: Ensembl/UCSC Genome Browser Workshop - Hiram Clawson (10:45 a.m. - 11:40 a.m.), Michael Schuster (11:45 a.m - 12:40 p.m.) **Please note Laptop Computer required for this workshop** |
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11:15 a.m.- 11:40 a.m. | HL53: Detecting Coevolution in and Among Protein Domains. Chen-Hsiang Yeang | HL54: Local Flexibility Aids Protein Multiple Structure Alignment. Lenore J Cowen | HL55: Transient mediated fate-determination in HIV (why bistability in unnecessary). Leor S Weinberger | HL04: A Systems Biology Approach for Steady State Analysis of Signaling Pathways. Sorin Draghici | FS2: Funding Opportunities & Activities of the US NSF, Frank Olken | |||||
11:45 a.m.- 12:10 p.m. | HL56: Nucleosome Positioning Signals in Yeast and Human Genomic DNA. William S Noble | HL57: Directed Search of Large Microarray Compendia. Matthew A Hibbs | HL58: Semi-supervised Learning for Peptide Identification from Shotgun Proteomics Datasets. Lukas Käll | FS3: Funding Opportunities & Activities of the US DOE, Susan Guerick | ||||||
12:15 p.m.- 12:40 p.m. | HL59: Inferring Non-Coding RNA Families by Genome-Scale Structure-Based Clustering. Rolf Backofen | HL60: Exploring Interaction Space of Multiple Retroviral Proteases and Their Substrates. Aleksejs Kontijevskis | FS4: Elixir: Changing the Panorama of Grant Applciations in Europe, Andrew Lyall | |||||||
12:40 p.m.- 2:00 p.m. | Lunch - Hall E | FS5 12:45 - 1:10 Funding Opportunities & Activities in Canada (CIHR, NSERC & Genome Canada) Gregory Huyer, CIHR | ||||||||
1:15 p.m.- 2:00 p.m. | FS6 1:15 - 1:40 p.m. Funding Opportunities & Activities in Ontario. Mima Vulovic | |||||||||
2:00 p.m. - 3:00 p.m. | Keynote Presentation - ISCB Senior Scientist Accomplishment Award, David Haussler, Hall G | |||||||||
3:00 p.m.- 3:30 p.m. | Conference Awards and Closing - Hall G |