10th Annual Rocky Mountain Bioinformatics Conference

Poster Session List

Poster List by Number no Abstracts


P01
Transcriptional Regulatory Networks of the Brain: the Whole versus the Part

Presenting Author: George Acquaah-Mensah, Massachusetts College of Pharmacy and Health Sciences

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P02
Expression genome-wide association study (eGWAS) to identify therapeutic targets and functional relationships in Huntington's disease

Presenting Author: Alexander Alleavitch, The Buck Institute for Research on Aging

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P03
A comparison of co-temporal signals from real biological and simulated data

Presenting Author: Edward Allen, Wake Forest University

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P04
Rediscovery of the p53 transcriptome

Presenting Author: Mary Allen, University of Colorado

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P05
Molecular Prediction by Regression (MPR) a New Platform for Predicting Molecular Targets and Multiple Drug Classes for Tumor Subtypes

Presenting Author: David Astling, University of Colorado School of Medicine

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P06
A model-guided workflow for prediction and validation of synthetic lethal gene pairs as antibiotic targets in the human pathogen Escherichia coli O157:H7

Presenting Author: Ramy Aziz, University of California, San Diego

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P07
Neural networks as a methodology for upgrading the selection of eucalyptus clones

Presenting Author: Leonardo Bhering, University of Viçosa

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P08
Simulationg and Increment of Data for Use in Neural Networks in Studies of Classification and Discrimination of Populations

Presenting Author: Leonardo Bhering, University of Viçosa

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P09
What is in Control of Replication Timing

Presenting Author: Sven Bilke, National Cancer Institute

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P10
Identifying Driver Mutations in Cancer with Protein Structures

Presenting Author: Andrew Bordner, Mayo Clinic

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P11
KBase: An Integrated Knowledgebase for Predictive Biology and Environmental Research

Presenting Author: Kevin Keegan, Argonne National Laboratory

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P12
Compression of structured high-throughput sequencing data

Presenting Author: Fabien Campagne, Weill Medical College of Cornell University

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P13
A correlation-based gene selection method on microarray data using Support Vector Machines

Presenting Author: Juana Canul-Reich, Universidad Juarez Autonoma de Tabasco

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P14
A web portal for the integration of genomic and proteomic data in Huntington’s Disease

Presenting Author: Greg Ceniceroz, The Buck Institute

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P15
An evolutionary model for asymmetric expression between paralogs

Presenting Author: Thomas Clarke, University of North Carolina at Chapel Hill

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P16
Genomic and Computational analysis of tuberculosis drug resistance

Presenting Author: Gargi Datta, University of Colorado School of Medicine; National Jewish Health

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P17
Analyzing "Unlikely" Semantic Similarity Across Multiple Ontologies

Presenting Author: Darcy Davis, Buck Institute for Research on Aging

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P18
Accessing ontology web-services of the National Center for Biomedical Ontology using Cytoscape

Presenting Author: Chaoyi Du, Buck Institute for Research on Aging

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P19
THE EFFECTS OF TEMPERATURE AND WATER TYPE ON SEED GERMINATION IN ACLEPIAS INCARTNATA

Presenting Author: Natalya Dungee, North Carolina Agricultural & Technical State University

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P20
Characterizing the SOS response of the human microbiome

Presenting Author: Ivan Erill, Univerity of Maryland Baltimore County

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P21
Automated concept annotation: how are we doing?

Presenting Author: Christopher Funk, University of Colorado

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P22
Functional Annotation Prediction, Assessment, and Enrichment in Pathogenic Mycobacteria

Presenting Author: Benjamin Garcia, University of Colorado Anschutz Medical Campus, National Jewish Health

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P23
PROGmiR: An online tool to study prognostic implications of miRNAs in a variety of cancers

Presenting Author: Chirayu Goswami, IU School of Medicine, Indiana University Pudrue University Indianapolis

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P24
In-silico identification of an epithelial core signature in human tumors

Presenting Author: Chirayu Goswami, IU School of Medicine, Indiana University Pudrue University Indianapolis

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P25
Perception of Local People and Concerned Authority Regarding Poaching of Wild Animals in Nepal (A case study of Chitwan National Park)

Presenting Author: Shailesh Acharya, Hedmark University Campus

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P26
Understanding Heart Remodelling in Congestive Heart Failure through Analysis of High-Dimensional miRNA, mRNA, and Clinical Data

Presenting Author: Michael Hinterberg, University of Colorado School of Medicine

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P27
A new Markov random field approach to predicting gene-disease relationships

Presenting Author: Yuxiang Jiang, Indiana University Bloomington

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P28
Consensus Gene Ranking Method for Genome-wide Functional Genetic Screens

Presenting Author: Jihye Kim, University of Colorado Denver

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P29
Biologically plausible enhancements to models of protein interaction network evolution

Presenting Author: Scott Kirkpatrick, California State University, Chico

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P30
Analytical Characterization of a Discrete Next Generation Sequencing Panel for Clinical Testing.

Presenting Author: Eric Klee, Mayo Clinic

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P31
Flexible Detection of RNA Polymerase II Pausing Changes

Presenting Author: Junnam Lee, Soongsil University

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P32
Identifying Huntington’s Disease-Associated Genes Through Integrative Regulatory Network Analysis

Presenting Author: Biao Li, The Buck Institute for Research on Aging

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P33
Hypergraph kernels for protein function prediction using protein complexes

Presenting Author: Jose Lugo-Martinez, Indiana University

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P34
Discovering Transcription Factor Regulatory Targets Using Gene Expression and Binding Data

Presenting Author: Mark Maienschein-Cline, University of Chicago

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P35
A proposal for web-based reviews of supplements and other nutraceuticals in aging and aging related disease

Presenting Author: Jackson Miller, The Buck Institute for Research on Aging

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P36
Genome-wide Conservation of Codon Adaptation in fast-growing Bacteria

Presenting Author: Patrick O'Neill, University of Maryland Baltimore County

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P37
Integrated database for analyzing the impact of coding SNPs in the human genome

Presenting Author: Tal Oron, Buck Institute

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P38
Provenance of unaligned reads in ChIP-Seq studies

Presenting Author: Zachary Ouma, Ohio State University

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P39
Identifying molecular mechanisms underlying variable penetrance

Presenting Author: Kymberleigh Pagel, Indiana University Bloomington

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P40
Modelling three protozoan parasitic diseases using host-parasite protein-protein interaction networks

Presenting Author: Paurush Praveen, University of Bonn

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P41
Constructing informative prior from multiple knowledge sources to improve network inference.

Presenting Author: Paurush Praveen, University of Bonn

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P42
Classifying metagenomic reads based upon compositional properties.

Presenting Author: Zachary Romer, Loyola University Chicago

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P43
Pharmacogenetic Annotation on Human Non-synonymous Variants By Machine Learning

Presenting Author: Chet Seligman, Buck Institute for Research in Aging

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P44
Investigating the Prevalence of CRISPRs in Bacterial Genomes

Presenting Author: Michael Shaffer, Loyola University Chicago

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P45
Computational Aspects of the Molecular Evolutionary Mechanism of Occult Hepatitis B Virus Infection

Presenting Author: Guifang Shang, University of Canberra

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P46
Detection of Differential Polyadenylation as an Alternative Cancer Marker

Presenting Author: Jimin Shin, Soongsil University

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P47
MOLECULAR MODELING STUDY OF ONCOGENINC Y220C MUTATION OF TUMOR SUPPRESSOR P53: STUDY TOWARDS THE RATIONAL DESIGN OF P53 STABILIZING DRUGS

Presenting Author: Nisha Shri, The Tamilnadu Dr.M.G.R. Medical University, Chennai, India

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P48
Scaffold_builder for combining de novo and reference-guided assembly

Presenting Author: Genivaldo Silva, SDSU

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P49
A molecular dynamics approach for the analysis of the docking of ligands to buried protein binding sites

Presenting Author: Awantika Singh, University of Arkansas for medical sciences and University of Arkansas at little rock

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P50
Using Index-based alignments to determine clade specificity in metagenomic samples

Presenting Author: Ashok Sivakumar, Johns Hopkins University

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P51
Multiple Sequence Alignment Using Motif Assembly

Presenting Author: Charnelle Smoak, North Carolina Agricultural and Technical State University

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P52
Protein-level annotation of missense mutations in ovarian cancer, acute myeloid leukemia and glioblastoma multiforme

Presenting Author: Janita Thusberg, Buck Institute for Research on Aging

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P53
Systems biology study of automated gene functional annotations reveals highly predictable concepts in various biomedical ontologies.

Presenting Author: Tobias Wittkop, Buck Institute for Research on Aging

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P54
Integration of Multiple Genomic Assays in Predicting Breast Cancer Survival

Presenting Author: Howard Yang, National Cancer Institute

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P55
Gene Content Based Functional Trait Analysis through Comparative Microbial Whole Genome Sequences

Presenting Author: Erliang Zeng, University of Notre Dame

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P56
PePr: a Peak-calling and prioritization pipeline to test group differences in ChIP-Seq data

Presenting Author: Yanxiao Zhang, University of Michigan

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P57
Analysis of Genome Wide DNA Methylation Changes in Human Skeletal Muscle Associated with Aging

Presenting Author: Artem Zykovich, Buck Institute for Research on Aging

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P58
Deletion of COX-2 gene augments atherosclerosis and vascular inflammation in ApoE-deficient mice, independently of local prostacyclin production

Presenting Author: Nicholas Kirkby, Imperial College London

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