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ROCKY 2018 | Dec 6 – 8, 2018 | Aspen/Snowmass, CO | HOME

Poster Session List


P01
Simplifying biological data access for data science

Presenting Author: David Adams, Brigham Young University

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P02
Dynamical comparison between Hemoglobin and Myoglobin reveals the affects of quaternary structure of Hemoglobin on the intrinsic dynamics of its subunits

Presenting Author: Rotem Aharoni, Ariel University

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P03
Convolutional Neural Networks In Classifying Cancer Through DNA Methylation

Presenting Author: Satya Avva, Saama

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P04
Homologous Inter-Domain Segments in Protein Families

Presenting Author: Dylan Barth, University of Nevada Las Vegas

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P05
GPCR-PEnDB: A database of protein sequences and derived features to facilitate prediction and classification of G protein-coupled receptors

Presenting Author: Khodeza Begum, University of Texas at El Paso

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P06
A Data Quality Testing Tool for Cross-institutional OMOP Electronic Health Record Data Repositories

Presenting Author: Timothy Bergquist, University of Washington

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P07
Med2Mech: Neural-Symbolic Representation of Molecular Mechanisms Underlying Pediatric Disease

Presenting Author: Tiffany Callahan, University of Colorado Denver Anschutz Medical Campus

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P08
Cell4D: a Spatial Stochastic Simulator for Biological Modeling

Presenting Author: Donny Chan, University of Toronto

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P09
REAL-neo, a comprehensive neoantigen prediction and prioritization pipeline using tumor sequencing data

Presenting Author: Yesesri Cherukuri, Mayo Clinic

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P10
NaVARgator: A bioinformatics program to cluster phylogenetic trees and identify representative variants

Presenting Author: David Curran, Hospital for Sick Children

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P11
Identifying candidate druggable targets in canine cancer cell lines using whole exome sequencing

Presenting Author: Sunetra Das, Colorado State University

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P12
Abstract Withdrawn


P13
SumSec: Accurate Prediction of Sumoylation Sites using Predicted Secondary Structure

Presenting Author: Abdollah Dehzangi, Morgan State University

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P14
Leaf: A self service cohort discovery and extraction browser for mining clinical enterprise data warehouses for research and quality improvement

Presenting Author: Nicholas Dobbins, University of Washington

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P15
The GA4GH/DREAM Workflow Execution Challenge

Presenting Author: James Eddy, Sage Bionetworks

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P16
A Machine Learning Classifier for Assigning Individual Patients with Systemic Sclerosis to Intrinsic Molecular Subsets

Presenting Author: Jennifer Franks, Geisel School of Medicine at Dartmouth

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P17
ShapeShifter: Making it Easy to Transform Genomic and Transcriptomic Data from One File Format to Another

Presenting Author: Brandon Fry, Brigham Young University

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P18
Using machine learning algorithms for classification of medulloblastoma subgroups based on gene expression data

Presenting Author: Sivan Gershanov, Ariel University

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P19
Computational Identification and Analysis of Bacterial Virulence Factors Embedded Into Bacteriophage Genomes

Presenting Author: Cody Glickman, University of Colorado Anschutz

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P20
Harmonizing and Analyzing Clinical Trials Data in the AHA Precision Medicine Platform

Presenting Author: Carsten Goerg, University of Colorado

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P21
Integrating pathway databases with Gene Ontology Causal Activity Models

Presenting Author: Benjamin Good, Berkeley Labs

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P22
Human Skin Biopsy Culture Model Maintains Psoriasis Disease Function and Demonstrate Pathway Engagement by Dexamethasone

Presenting Author: Shaun Grosskurth, AbbVie

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P23
How open is open? The (Re)usable Data Project assesses data licensing

Presenting Author: Melissa Haendel, Oregon Health & Science University

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P24
Custom database for identifying coral symbionts

Presenting Author: Graham Hamilton, University of Glasgow

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P25
Transcriptome analysis of cancer adjacent normal tissues reveal genes co-expressed with LINE elements

Presenting Author: Mira Han, University of Nevada Las Vegas

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P26
Refining orthology determination in RNA-seq phylogenetics

Presenting Author: Madison Hansen, American Museum of Natural History

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P27
Optimized hybrid assembly of mycobacterial genomes using MinION and Illumina next generation sequence reads

Presenting Author: Jo Hendrix, University of Colorado Anschutz

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P28
Predicting cancer outcomes based on gene-expression profiles more accurately with deep neural networks

Presenting Author: Kimball Hill, Brigham Young University

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P29
Computational and cultural aspects of improved attribution

Presenting Author: Kristi Holmes, Northwestern University

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P30
A new computational pipeline for PAR-CLIP characterizes a key immune regulatory mechanism

Presenting Author: Rachel Hovde, Chimera Bioengineering

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P31
Abstract Withdrawn


P32
ORCHID: a method for detecting short-range chromatin interactions in high-resolution 5C and Hi-C datasets

Presenting Author: Fei Ji, Massachusetts general hospital

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P33
Clustering of Protein Conformations using Parallelized Dimensionality Reduction

Presenting Author: Arpita Joshi, University of Massachusetts, Boston

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P34
Optimizing nontuberculous mycobacteria (NTM) de novo genome assemblies for application in clinical case studies

Presenting Author: Sara Kammlade, National Jewish Health

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P35
PredHPI: an integrated web-server platform for the prediction and visualization of host-pathogen interactions

Presenting Author: Rakesh Kaundal, Utah State University

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P36
An Automated Case Notes System for Psychiatrists Using Text Mining

Presenting Author: Nazmul Kazi, Montana State University

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P37
A systems biology approach to define essential kinases in small cell lung cancer

Presenting Author: Jihye Kim, University of Colorado Denver Anschutz Medical Campus

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P38
Comparative Analysis of Germline Microsatellites in the 1,000 Genomes Project

Presenting Author: Nicholas Kinney, Virginia College of Osteopathic Medicine

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P39
Omic profiling in healthy volunteers taking celecoxib reveals novel biomarkers regulated by cyclooxygenase-2

Presenting Author: Nicholas Kirkby, Imperial College London

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P40
Abstract Withdrawn


P41
Searching for translatable alternative splice isoforms in the human proteome

Presenting Author: Maggie Pui Yu Lam, University of Colorado Anschutz Medical Campus

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P42
A human disease network from gene-publication relationships on PubMed

Presenting Author: Edward Lau, Stanford University

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P43
Unbiased Pathway Detection Expands Cancer Pathways

Presenting Author: Chih-Hsu Lin, Baylor College of Medicine

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P44
Identifying HCV-Host Interactions from Amino Acids Sequences Using SVM Identifying HCV-Host Interactions from Amino Acids Sequences Using SVM

Presenting Author: Xin Liu, XuZhou Medical University

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P45
Modeling the Structure of BioGRID PPI Networks

Presenting Author: Sridevi Maharaj, University of California-Irvine

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P46
Select: A SQL-based, high-resolution selection scanning tool to Identify genomic selection signals using next-generation sequencing data

Presenting Author: Hannah Maltba, Brigham Young University

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P47
Codon Pairs are Phylogenetically Conserved: Codon pairing as a novel phylogenetic character state for parsimony and alignment-free methods

Presenting Author: Lauren McKinnon, Brigham Young University

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P48
ExtRamp: A novel algorithm for extracting the ramp sequence based on the tRNA adaptation index or relative codon adaptiveness

Presenting Author: Justin Miller, Brigham Young University

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P49
Metabolic profiling using a UHPLC-MS/MS-based platform to quantify amines, amino acids and methylarginines in plasma from cyclooxygenase-2 knockout mice

Presenting Author: Jane Mitchell, Imperial College London

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P50
The characterization of different cell types using the Benford law

Presenting Author: Sne Morag, Ariel University

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P51
Abstract Withdrawn


P52
Mining Heterogenous Relationships from Pubmed Abstracts Using Distant Supervision

Presenting Author: David Nicholson, University of Pennsylvania

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P53
Mutational impact on protein structure and function in endometrial cancer

Presenting Author: Amanda Oliphant, Brigham Young University

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P54
A platform for community-scale transcriptome-wide association studies

Presenting Author: YoSon Park, Perelman School of Medicine University of Pennsylvania

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P55
Good Nomen: An Interactive Web Application for Cleaning Clinical Data Using Standardized Terminologies

Presenting Author: Alyssa Parker, Brigham Young University

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P56
Proteomics of natural bacterial isolates powered by deep learning-based de novo identification

Presenting Author: Samuel Payne, Brigham Young University

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P57
Text Mining Novel Disease- and Drug-Specific Pathways

Presenting Author: Minh Pham, Baylor College of Medicine

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P58
A Case Study on the Effects of Noisy, Long-read Correction Approaches on Assembly Contiguity

Presenting Author: Brandon Pickett, Brigham Young University

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P59
Measuring chromosome conformation

Presenting Author: Brian Ross, University of Colorado Anschutz Medical Campus

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P60
Challenges Using Electronic Medical Record for Pharmacokinetic Analysis

Presenting Author: Matthew Shotwell, Vanderbilt University Medical Center

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P61
Measuring Transcription Factor Activity with Nascent RNA Sequencing

Presenting Author: Rutendo Sigauke, University of Colorado Anschutz Medical Campus

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P62
Addressing the compositional data problem in sequencing with a novel, robust normalization method

Presenting Author: James St. Pierre, University of Toronto

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P63
Governance Innovations for Promoting Cross-institutional Electronic Health Data Sharing

Presenting Author: Kari Stephens, University of Washington

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P64
Use of metadata and Bag-of-words to map measurements across observational study data

Presenting Author: Laura Stevens, University of Colorado Anschutz Medical School

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P65
Visualization Tool for interactive deciphering complex genetic regulation from multi-omic data

Presenting Author: LIN TING-WEI, Linkou Chang Gung Memorial Hospital

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P66
anexVis: visual analytics framework for analysis of RNA expression

Presenting Author: Diem-Trang Tran, University of Utah

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P67
Toxicant-protein relation extraction

Presenting Author: Ignacio Tripodi, University of Colorado, Boulder

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P68
LOINC2HPO: Improving translational informatics by standardizing EHR phenotypic data using the Human Phenotype Ontology

Presenting Author: Nicole Vasilevsky, Oregon Health & Science University

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P69
Exploratory Analysis of Diseased Male and Female Gene Expression Levels

Presenting Author: Clarissa White, Brigham Young University

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P70
BioThings API: Building a FAIR API Ecosystem for Biomedical Knowledge

Presenting Author: Chunlei Wu, The Scripps Research Institute

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