Conference on Semantics in Healthcare and Life Sciences (CSHALS)
Full Agenda*
(*Updated April 20, 2012. Schedule subject to change. )
Indicates that presentation slides or other resources are available. | go directly to :[Thursday - February 23] [Friday - February 24] | ||
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| Wednesday – February 22, 2012 | ||
| 7:30 am - 1:00 pm | Registration | |
| 8:30 am - 10:30 am |
*Notice to Tutorial Participants - Click here*
RPI-led Hands-on Tutorial - Semantic Healthcare and Life Sciences Tutorial: Mashing HC and LS Data CSHALS Tutorial Coordinator: Lee Feigenbaum Dominic DiFranzo, This e-mail address is being protected from spambots. You need JavaScript enabled to view it Presentation (.pdf)Jim McCusker, This e-mail address is being protected from spambots. You need JavaScript enabled to view it d3 Tutorial (web)Joshua Shinavier. This e-mail address is being protected from spambots. You need JavaScript enabled to view it http://services.fortytwo.net/linked-dataLinked Data diagram (.pdf)Location: Charles Suite - 2nd Floor Royal Sonesta Hotel |
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| 10:30 am - 11:00 am | Break | |
| 11:00 am - 12:15 pm | RPI-led Hands-on Tutorial (continues) | |
| 12:15 pm - 1:00 pm | Lunch | |
| 1:00 pm - 3:00 pm | RPI-led Hands-on Tutorial (continues) | |
| 3:00 pm - 3:15 pm | Break | |
| 3:15 pm - 5:00 pm | RPI-led Hands-on Tutorial (continues) | |
| 4:00 pm - 7:00 pm | Registration | |
| 4:00 pm - 5:00 pm | Poster (Author) Set-up |
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| 5:00 pm - 7:00 pm | Poster Reception | |
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| Thursday – February 23, 2012 | ||
| 7:30 am - 10:00 am | Registration | |
| 7:30 am - 8:30 am | Breakfast (continental) | |
| 9:00 am - 9:15 am | Welcome & Overview from Conference Chairs: Jill Mesirov (ISCB Board Member) Presentation (.pdf)Mike Bevil and Joanne Luciano Presentation (.pdf) |
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| 9:15 am - 10:00 am | Keynote 1 SMArt Semantics for Clinical Healthcare Delivery Dr. Isaac Kohane Director, Children’s Hospital Informatics Program Henderson Professor of Pediatrics and Health Sciences and Technology Harvard Medical School (HMS) Co-Director, HMS Center for Biomedical Informatics Director of the HMS Countway Library of Medicine Cambridge, MA - USA Presentation (.pdf) |
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| 10:05 am - 11:00 am | Literature | Executing Semantics Across Documents: Bringing Science Into Context Presenter: Anita de Waard Disruptive Technology Director, Elsevier Labs Utrecht, Netherlands |
| The Biospecimen Repository as Library: How HeLa is like Moby Dick Presenter: James McCusker Rensselaer Polytechnic Institute Troy, USA Presentation (web) |
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| 11:00 am - 11:20 am | Break | |
| 11:20 am - 11:40 am | Tech Talk 1 | Javascript - The Key to Successful SemWeb Deployments Presenter: Jans Aasman Franz Inc. Oakland, CA, USA |
| 11:45 am to 12:05 pm | Tech Talk 2 | Managing Bigdata® in Bioinformatics Presenter: Bryan Thompson SYSTAP LLC Greensboro, NC USA Presentation (.pdf) |
| 12:05 pm - 1:15 pm | Lunch | |
| 1:15 pm - 2:00 pm | Keynote 2 E-Science Dictates E-Publication - Nanopublications as a Substrate for In-silico Knowledge Discovery Dr. Barend Mons Scientific Director Netherlands Bioinformatics Center Biosemantics Group Leader, Leiden University Medical Centre Netherlands |
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| 2:05 pm - 3:30 pm | Community/Knowledge Management | The VIVO Ontology: Enabling Networking of Scientists Presenter: Ying Ding Indiana University Bloomington, USA Presentation (.pdf) |
| Domain Knowledge and Provenance-Integrated Knowledge Organization System Represented with RDFS and SPARQL Presenter: Young Soo Song Birmingham, USA Presentation (.pdf) |
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| E-Diary Data Collection in Neurology and Psychiatry: Computational Achievements and Challenges Presenter: Ron Calvanio Massachusetts General Hospital & Harvard Medical School Cambridge, USA Presentation (.pdf) |
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| 3:30 pm - 3:45 pm | Break | |
| 3:45 pm - 5:10 pm | Drug Discovery, Linked Data |
Target Identification Using an Integrated Subset of the Yeast Interactome with Chemical Genomic Data in RDF Presenter: Nadia Anwar General Bioinformatics Reading, United Kingdom Presentation (.pdf) |
| Chem2Bio2RDF: Linked Open Data for Drug Discovery Presenter: Bin Chen Bloomington, USA Presentation (.pdf) |
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| Using Linked Open Data to Inform the Drug Discovery Process Presenter: James Snowden UCB Celltech Slough, United Kingdom Presentation (.pdf) |
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| 5:15 pm - 6:00 pm | Keynote 3 Title: Inside the Mind of Watson Dr. Chris Welty IBM Research Scientist T.J. Watson Research Center New York, USA |
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| 6:00 pm - 6:05 pm | Daily Closing Remarks | Mike Bevil and Joanne Luciano, Conference Chairs |
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| Friday – February 24, 2012 | ||
| 7:30 am - 10:00 am | Registration | |
| 7:30 am - 8:30 am | Breakfast (continental) | |
| 8:30 am - 8:45 am | Review - Previous Day Mike Bevil and Joanne Luciano, Conference Chairs Presentation (.pdf) |
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| 8:45 am - 9:30 am | Keynote 4 The Knowledge Reengineering Bottleneck Dr. Rinke Hoekstra Knowledge Representation & Reasoning Group VU University Amsterdam Leibniz Center for Law, University of Amsterdam Netherlands Presentation (.pdf) |
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| 9:30 am - 10:25 am | Semantics in Research | sdlink: An Integrated System for Linking Biological and Biomedical Semantic Data Presenter: Alexandre Francisco Technical University of Lisbon Lisboa, Portugal |
| Spo: An Ontology for Describing Host-pathogen Interactions Inherent to Streptococcus Pneumoniae Infections Presenter: Cátia Vaz Poly Institute of Lisbon Lisbon, Portugal |
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| 10:25 am - 10:40 am | Break | |
| 10:40 am - 12:35 pm | Pharmacovigilance & Safety | Dynamic Enhancement of Drug Product Labels Through Semantic Web Technologies Presenter: Richard Boyce University of Pittsburgh Pittsburgh, USA Presentation (.pdf) |
| Adverse Events Following Immunization: Standardization, Automatic Case Classification and Signal Detection Presenter: Mélanie Courtot British Columbia Cancer Research Centre Vancouver, Canada Presentation (.pdf) |
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| Exploitation of Semantic Methods to Cluster Pharmacovigilance Terms Presenter: Natalia Grabar Universite Lille Villeneuve d’Ascq, France Presentation (.pdf) |
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| Annotation Analysis for Testing Drug Safety Signals Presenter: Trish Whetzel Stanford University Stanford, USA Presentation (.pdf) |
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| 12:35 pm - 1:30 pm | Lunch | |
| 1:30 pm - 2:15 pm | Keynote 5 Wolfram|Alpha and the Quest for Computational Knowledge Dr. Stephen Wolfram Founder & CEO Wolfram Research Wolfram Research Champaign, IL - USA |
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| 2:20 pm - 3:15 pm | Clinical Healthcare | Using Ontologies in the Age-Phenome Knowledge-base (APK) Presenter: Eitan Rubin Ben Gurion University Beer Sheva, Israel |
| Intelligent Surveillance of Health Care-associated Infections with SADI Semantic Web Services Presenter: Christopher Baker University of New Brunswick Saint John, Canada Presentation (.pdf) |
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| 3:15 pm - 4:15 pm | Panel Discussion | Moderators: Mike Bevil and Joanne Luciano, Conference Chairs |
| 4:15 pm - 4:30 pm | Future Actions Mike Bevil and Joanne Luciano, Conference Chairs |
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| 4:30 pm | Conference Adjourns | |
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