ISCB-LA / X-meeting / BSB / SoIBio 2014
Belo Horizonte
Locations of interest in Belo Horizonte - MAP
The Venue
Here is a map of the UFMG Campus. The main auditorium will be CAD1, accross from the World Cup Soccer Stadium. The second auditorium for the breakout sessions will be Auditório 3 at the Biology Institute - ICB, accross the street from CAD 1. Coffee break, poster sessions and sponsor booths will be located on the ground floor of CAD 1.
CAD 1 Auditorium
About Belo Horizonte
Flying into town. Belo Horizonte is a hub for two of the main brazilian airlines, Gol and Azul. People can reach the city form anywhere in the country with no stops or at the most one stop. There are two airports in town, Pampulha, right next to the University for short flights and the international airport of Confins. International flights arrive directly in Belo Horizonte from Panama, Miami and Lisbon. This will enable visitors from the US or Europe to reach town with one stop in most cases.
Weather in October is mild in Belo Horizonte. For October the temperature will fluctuate between 65oF-83oF. Sunshine is expected for just 12h per day. Rainfall is just average between the driest in July and wettest in December. For detailed climate information visit this web site.
Hotels around the venue
There are over 12 hotels nearby. The map indicates some of these hotels. Prices will range from ~100USD to 60 USD for individual rooms. The fast bus service that just opened to downtown facilitates transit to town where many hotels are available.
At the moment we have discount agreements with two hotels:
1 - San Diego Suites Pampulha
2 - Pampulha Flat
3 - Fino da Bola Hostel (if you want to have it cheap!)
Things to do around Belo – some tips
- Hiking – The natural parks of Serra do Cipó and Caraça are nice day trips and offer opportunities for tracking and bird watching.
- History – Ouro Preto is a UNESCO World Heritage historical site. It was the first capital of Brazil. Other historical sites nearby are Tiradentes, Congonhas, São Joal Del Rei, among others.
- Museums in Belo – Belo Horizonte recently inaugurated a series of culture sites around Liberty Square. Near town there is the well known Inhotim Botanical Garden and Natural Art museum, a truly unique experience.
- The Central Market is a tourist favourite for all the diversity of food and local crafts.
- On Sundays the open market known as Hippie Fair attracts thousands of people.
- Belo Horizonte is know as the city of bars. Read this NY Times piece.
- Her is also a NY Times article on what to do in Belo for 36 hours.
- Visit the city tourism web site.
- FIFA's host city web page
Workshops/Mini Courses
Deadline: July 31, 2014
ISCB-LA 2014 Conference calls for submissions to the Workshop/ Mini Courses track. The purpose of the workshop track is to bring together people with common interests to discuss defined topics.
Proposals for Workshops should be submitted via the online submission system here by end of day July 31, 2014.
Submissions must include up to a one-page description of the topic, its relevance to the community, and the reasons for planning a workshop on this topic at ISCB-LA 2014. These explanations could be followed by a list of topics for possible presentations with one-paragraph descriptions. Finally, a draft time schedule for the workshop should be presented. A finalized list of speaker names is not necessary but may add validity to the proposal. If you list invited speakers as "accepted", please make sure that they agree to speak understanding the financial constraints described below. Submitters should briefly describe their qualification/experience in organizing a workshop.
All submissions will be evaluated by a committee considering the following criteria:
- Relevance, interest, and value of the topic to attendees.
- Complementarity to the conference program.
- Completeness, clarity, and quality of the workshop proposal.
- Qualification of the submitter(s) to organize the workshop.
- Likely success of the proposed workshop.
Submission Topics:
Bioinformatics of Disease and Treatment
Computational aspects
Comparative Genomics
Education --The examination of how different models of learning and educational programming in bioinformatics (e.g. tutorials, workshops, courses and e-learning) can be used to impact the understanding and use of bioinformatics across different audiences.
Epigenetics
Functional Genomics
Genome Organization and Annotation
Genetic Variation Analysis
Metagenomics
Pathogen informatics
Population Genetics, Variation and Evolution
Protein Structure and Function Prediction and Analysis
Proteomics
Sequence Analysis
Systems Biology and Networks
** Workshop Submission Form **
TRANSPORTATION
There are two airports in Belo Horizonte, the International Airport at Confins and the downtown Pampulha airport. If you are flying to the Pampulha airport you will arrive very near the meeting venue, just take a cab to your hotel.
DETAILED SCHEDULE
PDF of the current Detailed Schedule
Gene Functional Networks and Protein Interactomics
Data-driven Science: SGI for Genomics Analysis
Go directly to: [DAY 2] [DAY 3] | ||
Start Time | End Time | Session Type |
9:00 PM | 5:00 PM | Latin American Student Council Symposium Auditorium A3, Ground Floor, ICB |
3:00 PM | 6:00 PM | Life Ion Torrent NGS Workshop Dale Yuzuky, Ion Torrent Genetics Department Auditorium, B2 Room 162, ICB |
9:00 PM | 5:00 PM | PATRIC Bioinformatics Resource Center workshop featuring data and analysis tools for bacterial pathogens Bioinformatics Department Auditorium, F2 room 254, ICB |
10:00 AM | 10:30 AM | Coffee Break, By Auditorium A3 |
12:00 PM | 1:00 PM | Lunch, By Auditorium A3 |
3:30 PM | 4:00 PM | Coffee Break, By Auditorium A3 |
DAY 1 - October 28th |
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Start Time | End Time | Session Type |
8:40 AM | 9:00 AM | Opening Welcome and Conference Overview (Burkhard Rost, Guilherme Oliveira) CAD1 Auditorium |
9:00 AM | 10:00 AM | Keynote: Insights from the sequencing of ancient genomes Janet Kelso, Max-Planck Institute for Evolutionary Anthropology, Germany (Burkhard Rost) CAD1 Auditorium |
10:00 AM | 10:30 AM | Coffee Break CAD 1 Atrium |
10:30 AM | 12:00 PM | Poster Flash Presentations: Functional Genomics + Pathogen informatics + Systems Biology and Networks (Lucia Peixoto) -Modeling Senescence Onset: Application to Astrocyte Cells in Alzheimer´s Disease José Carlos Mombach, UFSM, Brazil -Functional Analysis of Alternative Isoform Expression Using Long Read Technologies Ana Conesa, CIPF, Spain -Evolutionary genomics of Staphylococcus aureus adaptation to human and animal hosts Ross Fitzgerald, Univ. Edinburgh, UK -Integrated omics analysis of leaf senescence in cultivated sunflower (Helianthus annuus L.) Paula Fernandez, INTA, Argentina Reitoria Auditorium |
10:30 AM | 12:00 PM | Oral Presentations, BMC Genomics Track: -Novel therapeutics for coronary artery disease from genome-wide association study data Mani Grover, Deakin Univ., Australia -Analyse multiple disease subtypes and build associated gene networks using genome-wide expression profiles Javier De Las Rivas, CiC-IBMCC, CSIC/USAL, Spain -Revisiting molecular serotyping of Streptococcus pneumoniae Roney Coimbra, FIOCRUZ, Brazil CAD1 Auditorium |
12:00 PM | 1:00 PM | Lunch Break CAD 1 Atrium |
1:00 PM | 1:30 PM | Industry Tech Talk: SGI Data-driven Science: SGI for Genomics Analysis James Reaney (Floriano Silva Jr. / André Gardinalli) CAD1 Auditorium |
1:30 PM | 2:00 PM | Industry Tech Talk: Thomson Reuters Connecting the Dots: Information Management to Convert Big Data into Big Decisions Antero Macedo (Alan Durham) CAD1 Auditorium |
2:00 PM | 3:30 PM | BSB Flash Presentations (Maria Emilia Machado Telles Walter) -On the multichromosomal Hultman number Pedro Feijão, Bielefeld Univ., Germany -Dynamic Programming for Set Data Types Peter Stadler, Univ. Leipzig, Germany -Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework Nina Luhmann, Bielefeld Univ., Germany -Quality metrics for benchmarking sequences comparison tools Erwan Drézen, INRIA/IRISA/Genscale, France Reitoria Auditorium |
2:00 PM | 3:30 PM | Oral Presentations, BMC Genomics Track: -Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage Fernando Antoneli, UNIFESP, Brazil -SncSeq: an automated pipeline for analyzing small non-coding RNA high throughput sequencing data Natasha Jorge, INCA, Brazil -MaLe-PSI-BLAST, a tool for generating and inspecting clusters of putatively homologous proteins based on Machine Learning optimized PSI-BLAST J Miguel Ortega, UFMG, Brazil CAD1 Auditorium |
3:30 PM | 4:00 PM | Coffee Break CAD 1 Atrium |
4:00 PM | 5:00 PM | Keynote: Network-based strategies in functional follow-up studies of breast cancer GWAS Mauro Castro, Universidade Federal do Rio Grande do Sul, Brazil (Sérgio Campos) CAD1 Auditorium |
5:00 PM | 7:00 PM | Reception Reitoria Atrium |
DAY 2 - October 29th |
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Start Time | End Time | Session Type |
8:45 AM | 9:00 AM | Opening Welcome and Conference Overview (Sérgio Campos) CAD1 Auditorium |
9:00 AM | 10:00 AM | Keynote: Integrative computational approaches in cancer drug discovery Bissan Al-Lakizani, The Institute of Cancer Research, UK (Fábio Passetti) CAD1 Auditorium |
10:00 AM | 10:30 AM | Coffee Break CAD1 Atrium |
10:30 AM | 12:00 PM | Poster Flash Presentations: Population Genetics, Variation and Evolution + Sequence Analysis (Daniel Almonacid) -The druggable proteome: Identifying novel target families for cancer Parisa Razaz, ICR, United Kingdom -Exploring the membrane potential of a simple dual membrane system by using a constant electric field Yerko Escalona, Fund. Ciencia & Vida, Chile -Residue correlation analysis - state of the art and successful applications Lucas Bleicher, UFMG, Brazil -Identification of Highly Mutated Protein Superfamilies in Cancer Using Protein Similarity Networks Daniel Almonacid, Univ. Andres Bello, Chile Reitoria Auditorium |
10:30 AM | 12:00 PM | Oral Presentations, BMC Genomics Track: -The impact of quality filter for RNA-Seq based reference over differential gene expression for prokaryotes Rommel Ramos, UFPA, Brazil -ProCARs: Progressive Reconstruction of Ancestral Gene Orders Amandine Perrin, INRIA Lille, Univ. Lille 1 - LIFL France -New features and refined SVM improve snoRNA identification in snoReportJoão Victor Oliveira, UnB, Brazil CAD1 Auditorium |
12:00 PM | 1:30 PM | Lunch Break CAD1 Atrium |
1:00 PM | 2:00 PM | ISCB Open Business Meeting CAD1 Auditorium |
2:00 PM | 3:30 PM | BSB Flash Presentations (Marcelo Brígido) -FUNN-MG: A Metagenomic Systems Biology Computational Framework Leandro Corrêa, UFPA, Brazil -Length and Symmetry on the Sorting by Weighted Inversions Problem Ulisses Dias, UNICAMP, Brazil -FluxMED: An Adaptable and Extensible Electronic Health Record System Lucas Hanke, UFMG, Brazil -Influence of sequence length in promoter prediction performance Sávio Carvalho, UFOP, Brazil Reitoria Auditorium |
2:00 PM | 3:30 PM | Oral Presentations, BMC Genomics Track: -Evolution of the Unspliced Transcriptome Jan Engelhardt, University of Leipzig, Germany -Experimental Study of Local Alignment Distributions in the Comparison of Large Genomic Sequences Oswaldo Trelles, Universidad de Malaga, Spain -Memory acquisition and retrieval impact different epigenetic processes that regulate gene expression. Lucia Peixoto, University of Pennsylvania, USA CAD1 Auditorium |
3:30 PM | 4:00 PM | Coffee Break CAD1 Atrium |
4:00 PM | 5:00 PM | Keynote: Challenges in integrating exome sequencing, mRNA-seq, and microRNA-seq to identify disease genes: case study in optic nerve degeneration (Priscila Grynberg) Terry Gaasterland, Scripps Genome Center, UCSD, USA CAD1 Auditorium |
5:00 pm | 7:00 pm | Poster Viewing - Odd numbers CAD1 Atrium |
5:30 pm | 7:30 pm | SoIBio Open Meeting Bioinformatics Department Auditorium, F2 room 254, ICB |
DAY 3 - October 30th |
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Start Time | End Time | Session Type |
8:45 AM | 9:00 AM | Opening Welcome and Conference Overview (Javier De Las Rivas) CAD1 Auditorium |
9:00 AM | 10:00 AM | Keynote: Big Data challenges in genomics and computational biology Kimmen Sjolander, UC Berkeley (Guilherme Oliveira) CAD1 Auditorium |
10:00 AM | 10:30 AM | Coffee Break CAD1 Atrium |
10:30 AM | 12:00 PM | Poster Flash Presentations: Protein Structure and function Prediction and Analysis + Bioinformatics of Disease and Treatment (Francisco Lobo) -GATB: Toolbox for developing efficient NGS software Dominique Lavenier, CNRS, France -DNA sequences do have a mathematical structure, and ancient DNA sequence can be revealed by error-correcting codes Marcelo Brandão, UNICAMP, Brazil -MASSA (Multi-Agent System for Snp Annotation) uses at genomic population studies Giordano Soares-Souza, UFMG, Brazil -Geneplast: an R package for evolutionary rooting and plasticity inference based on orthologous groups distribution. Rodrigo Dalmolin, UFRN, Brazil Reitoria Auditorium |
10:30 AM | 12:00 PM | Oral Presentations, BMC Genomics Track: -Genomic Island Prediction Software Siomar Soares, UFMG, Brazil -Using conformational preferences of amino acid residues and meta-heuristics to predict 3-D protein structures Marcio Dorn, UFRGS, Brazil -Visual and interactive strategies to reveal patterns of protein-ligand interaction Alexandre Fassio, UFMG, Brazil CAD1 Auditorium |
12:00 PM | 1:30 PM | Lunch Break CAD1 Atrium |
1:00 PM | 2:00 PM | AB3C Open Business Meeting CAD1 Auditorium |
2:00 PM | 3:30 PM | BSB Flash Presentations (Nalvo Almeida Jr.) -A MultiObjective Evolutionary Algorithm for improving Multiple Sequence Alignments Wilson Soto, Univ. Central, Colombia -Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach João Zanetti, Simon Fraser Univ., Canada -Structural comparative analysis of secreted NTPDase models of Schistosoma mansoni and Homo sapiens Priscila Capriles, UFJF, Brazil -Storage policy for genomic data in federated clouds Maristela Holanda, UnB, Brazil Reitoria Auditorium |
2:00 PM | 3:30 PM | Poster Flash Presentations: Others (Adhemar Zerlotini) -Functional Comparison and Inference Assessment of Biological Networks by Counting Basic Building Blocks Alberto Jesus Martin, Fundación Ciencia & Vida, Chile -Comparative evolutionary analysis of genes related to longevity in bird species Rafael Lucas Muniz Guedes, LNCC, Brazil -Data mining framework to predict short ORFs in prokaryotes by means of a target-decoy database approach and machine learning techniques Fabio Ribeiro Cerqueira, UFV, Brazil KOMODO2 – Large-scale genomic inference Francisco Pereira Lobo, EMBRAPA, Brazil |
3:30 PM | 4:00 PM | Coffee Break CAD1 Atrium |
4:00 PM | 6:00 PM | Poster Viewing - Even numbers CAD1 Atrium |
Satellite Day - Courses - October 31st | ||
8:30 AM | 5:30 PM | Practical Bioinformatics MiniCourse on "Gene Functional Networks and Protein Interactomics" Bioinformatics Computer Room, M1 Ground Floor, ICB |
9:00 AM | 5:45 PM | EBI Industry Workshop Genetics Department Auditorium, B2 room 162, ICB |
1:00 PM | 5:00 PM | Coverage Analysis for NGS data experiments Bioinformatics Department Auditorium, F2 room 254, ICB |
10:00 AM | 10:30 AM | Coffee Break ICB Atrium |
12:00 PM | 1:00 PM | Lunch ICB Atrium |
3:00 PM | 3:30 PM | Coffee Break ICB Atrium |
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LATIN AMERICAN STUDENT COUNCIL SYMPOSIUM
27th of October, 2014 - Belo Horizonte, Brazil - prior to the ISCB-LA conference.
Submit your abstract now for the 1st Latin American Student Council Symposium organized by the ISCB Student Council!
The Latin American Student Council Symposium 2014 will bring together young computational biologists from several research areas and regions of the world. As the central part of our symposium, 10 students will be selected for oral presentations from the submitted abstracts. Being a small and student focused meeting, this gives you a better chance of being selected for an oral presentation. This is your chance to present your work to an international audience of young scientists. We welcome abstracts covering both scientific studies as well as novel tools and applications in the field of computational biology and bioinformatics.
Please note that submissions for LA-SCS is separate from submissions for the main ISCB-LA conference. Abstracts submitted to ISCB-LA may be re-submitted to LA-SCS too!
We hope to be able to offer Travel Fellowships to some students too. Travel Fellowship information will be sent to eligible students after the end of abstract submission.
Early submission deadline closes on Aug 31st 2014. Submit Now!
Submit abstracts at this link www.easychair.org/conferences/?conf=lascs2014
For more details and updates about the Symposium, visit our website http://lascs.iscbsc.org
Key Dates:
- Early submission deadline: Aug 31st 2014
- Late submission deadline: Sep 7th 2014
- Symposium date: Oct 27th 2014