iscb
 See Bioinformatics Books
 or click below to purchase
 books and products now
 
In Association with Amazon.com
 




Search WWW
Search www.iscb.org

 

 


The ISCB website is hosted by the
San Diego Supercomputer Center

Internal online resources for ISCB staff and volunteer leaders (password protected): Executive Committee, Board Members, Staff, Committees

**If you've reached this page in error trying to reach the International Society for Clinical Biostatistics, click here.**


Copyright © 2003 International Society for Computational Biology. All rights reserved.

Education Working Group

To participate in the discussion send mail to majordomo@sdsc.edu with the body of the message containing subscribe iscb-edu. All educators interested in the charge below are invited to participate. Current members 49.

Charge
To define a generic bioinformatics curriculum  which the society endorses as a staring point in the provision of a complete education in bioinformatics. The first draft of this curriculum will be presented and discussed at ISMB 2001 . The curriculum is intended to be an aid to those developing their own programs in bioinformatics by covering all aspects of the field and providing links to the work of others.The curriculum covers what will likely be taught at both the undergraduate and graduate levels at universities and other teaching institutions worldwide. 

Updates
April 7, 2001 - Finalization of the table belowApril 1, 2001 - The question of whether the curriculum should cover the use of bioinformatics tools by an audience not taking bioinformatics as a major was considered. The consensus was that this would defocus our efforts and that we would concentrate on what is required to educate those majoring in bioinformatics. In other words a curriculum suited to those who would become future teachers of bioinformatics. While teaching molecular biologists, computer scientists etc. is very important this can only be done by those well trained in bioinformatics and that will be the focus.

Current Question
Does the following cover all elements of a useful curriculum? 

THEORY AND METHODS APPLICATION AREAS DATA TYPES
Algorithms

. Pairwise sequence alignments
. Multiple sequence alignment
. Pairwise structure alignments
. Multiple structure alignments
. Phylogenetic tree construction
. Fragment and whole genome assembly
. Genome comparison
. Biological databases
. Expression analysis
. Feature extraction from sequences and structures
. Structure prediction (RNA, DNA and protein)
. Docking
. Knowledge extraction
. Protein - protein interactions
. Interaction networks
. Integrated systems

. Protein and genomic sequences
. Gel electrophoresis
. Structures (coordinates, structure factors, NMR constraints)
. Expression data (micro arrays)
. Spectroscopic (mass spec., circ. dichroism)
. Kinetic
. Thermodynamic
. Interaction data (binding constants)
. Images

. Recursion
. Graph trees
. Dynamic programming
. Classification
. Decision trees
. Bounded search
Mathematical and statistical analysis
. Optimization
. Combinatorial methods
. Cluster analysis
. Classification
. Bayesian inference
. Decision trees
. Schocastic context free grammars
Artificial intelligence/machine learning
. Neural networks
. Genetic networks
. Natural language processing
Data representation
. Ontologies
. Data models/structures
Knowledge representation
Databases and knowledge bases
Programming languages
Graphics and image analysis
Modeling Usability engineering
Technology support
. Crystallography
. Micro arrays
. Mass spectrometry
. NMR