| Two days ISCB-LatinAmerica-2012 Practical Tutorials |
| Day 1: Saturday - March 17, 2012 |
| 8:30 AM - 9:00 AM |
Tutorial Registration |
| 9:00 AM - 12:30 PM |
Practical Tutorials and Workshops (Morning Session) |
Analysis, Comparison and Classification of Protein Structures
[Room Z06 FCBS] |
Genome browsers with special emphasis in the ENSEMBL system
[Room CE1] |
Protein resources and tools: sequence, architecture and protein interactions
[Room Z05 FCBS] |
Algorithms and tools for transcriptomics and multiple gene profiling using the open source platforms R and Bioconductor
[Room CC1D] |
| 12:30 PM - 2:00 PM |
Lunch |
| 2:00 PM - 5:30 PM |
Practical Tutorials and Workshops (Afternoon Session) |
Analysis, Comparison and Classification of Protein Structures
[Room Z06 FCBS] |
Genome browsers with special emphasis in the ENSEMBL system
[Room CE1] |
Protein resources and tools: sequence, architecture and protein interactions
[Room Z05 FCBS] |
Algorithms and tools for transcriptomics and multiple gene profiling using the open source platforms R and Bioconductor
[Room CC1D] |
| Day 2: Sunday - March 18, 2012 |
| 8:30 AM - 9:00 AM |
Tutorial Registration |
| 9:00 AM - 12:30 PM |
Practical Tutorials and Workshops (Morning Session) |
Immunoinformatics
[Room CC1D] |
Next generation sequencing: an introduction for bioinformaticians
[Room Z06 FCBS] |
Functional Genomics
[Room CE1] |
Computer-Based Drug Design
[Room Z05 FCBS] |
| 12:30 PM - 2:00 PM |
Lunch |
| 2:00 PM - 5:30 PM |
Practical Tutorials and Workshops (Afternoon Session) |
Immunoinformatics
[Room CC1D] |
Next generation sequencing: an introduction for bioinformaticians
[Room Z06 FCBS] |
Functional Genomics
[Room CE1] |
Computer-Based Drug Design
[Room Z05 FCBS] |
| Three days ISCB-LatinAmerica-2012 Main Conference |
| Day 3: Monday - March 19, 2012 |
| 8:00 AM - 5:30 PM |
Main Conference Registration |
| 8:30 AM - 9:00 AM |
Welcome/Opening Main Conference |
SESSION I. Comparative Genomics and Evolution.
[Loc. Auditorium Juan Francisco Fresno (ground floor)] |
| 9:00 AM - 9:40 AM |
Keynote Lecture I: "Function prediction at different spatial scales" |
| Peer Bork. EMBL, Heidelberg, Germany. |
| 9:40 AM - 10:30 AM |
Oral Presentations MM1-MM3 |
| 10:30 AM - 11:00 AM |
Coffee Break |
| 11:00 AM - 11:40 AM |
Keynote Lecture II: "Orphan Orfogenic ORFs in the genomes of African trypanosomes" |
| Fernando Alvarez. Universidad de la República, Uruguay. |
| 11:40 AM - 12:30 PM |
Oral Presentations MM4-MM6 |
| 12:30 PM - 2:00 PM |
Lunch |
| 12:30 PM - 2:00 PM |
Business Presentation with free Lunch Sponsored by Life Technologies (open to any interested people)
[Loc. Sala Colorada (ground floor)] |
SESSION II. Genomics, Proteomics, Metagenomics and Metabolomics.
[Loc. Auditorium Juan Francisco Fresno (ground floor)] |
| 2:00 PM - 2:40 PM |
Keynote Lecture III: "Challenges of Assembling Genomes from the Second Generation Sequencing data" |
| Aleksey Zimin. University of Maryland, USA. |
| 2:40 PM - 3:30 PM |
Oral Presentations MA1-MA3 |
| 3:30 PM - 4:00 PM |
Coffee Break |
| 4:00 PM - 4:40 PM |
Keynote Lecture IV: "SABIA: A new version for next generation sequencing platforms" |
| Ana Teresa Ribeiro de Vasconcelos. National Laboratory of Scientific Computation, Brazil. |
| 4:40 PM - 5:30 PM |
Oral Presentations MA4-MA6 |
| 5:30 PM - 7:00 PM |
Poster Session I (Odd numbers)
[Loc. Central Square (ground floor)] |
| 6:30 PM - 8:30 PM |
Meeting of SoIBio and FreeBIT/CYTED: Societies and Networks promoting Bioinformatics for Life Sciences and Biomedicine in IberoAmerica.
[Loc. Sala Colorada (ground floor)] |
| Day 4: Tuesday - March 20, 2012 |
| 8:00 AM - 5:30 PM |
Main Conference Registration |
SESSION III. Macromolecule Structure/Function Prediction.
[Loc. Auditorium Juan Francisco Fresno (ground floor)] |
| 9:00 AM - 9:40 AM |
Keynote Lecture V: "Amazing Protein Folds" |
| Manfred Sippl. University of Salzburg, Austria. |
| 9:40 AM - 10:30 AM |
Oral Presentations TM1-TM3 |
| 10:30 AM - 11:00 AM |
Coffee Break |
| 11:00 AM - 11:40 AM |
Keynote Lecture VI: "Conformational diversity and the development of new tools in bioinformatics" |
| Gustavo Parisi. Universidad Nacional de Quilmes, Argentina. |
| 11:40 AM - 12:30 PM |
Oral Presentations TM4-TM6 |
| 12:30 PM - 2:00 PM |
Lunch |
| 12:40 PM - 2:00 PM |
Business Presentation with free Lunch Sponsored by Roche (open to any interested people)
[Loc. Sala Colorada (ground floor)] |
SESSION IV. Computer Aided Drug Design and Docking/Molecular Dynamics Simulations.
[Loc. Auditorium Juan Francisco Fresno (ground floor)] |
| 2:00 PM - 2:40 PM |
Keynote Lecture VII: "Coarse-Grain methods for molecular dynamics simulations: Actually bridging the gap between simulations and biological scales" |
| Sergio Pantano. Instituto Pasteur de Montevideo, Uruguay. |
| 2:40 PM - 3:30 PM |
Oral Presentations TA1-TA3 |
| 3:30 PM - 4:00 PM |
Coffee Break |
| 4:00 PM - 4:40 PM |
Keynote Lecture VIII: "Molecular Simulation of Non-equilibrium Systems: The Dance of ions across the membrane" |
| Danilo González. Universidad Andres Bello, Chile. |
| 4:40 PM - 5:30 PM |
Oral Presentations TA4-TA6 |
| 5:30 PM - 7:00 PM |
Poster Session II (Even numbers)
[Loc. Central Square (ground floor)] |
| Day 5: Wednesday - March 21, 2012 |
SESSION V. Biomedicine and Immunoinformatics.
[Loc. Auditorium Juan Francisco Fresno (ground floor)] |
| 9:00 AM - 9:40 AM |
Keynote Lecture IX: "Immune Epitope Database and Analysis Resource Program: Proving Intuitive Access To Comprehensive Epitope Data And Tools" |
| Alessandro Sette. La Jolla Institute for Allergy and Immunology, USA. |
| 9:40 AM - 10:30 AM |
Oral Presentations WM1-WM3 |
| 10:30 AM - 11:00 AM |
Coffee Break |
| 11:00 AM - 11:40 AM |
Keynote Lecture X: "Using Genomics to Improve Response to Neoadjuvant Therapy in Patients with Rectal Cancer" |
| Anamaría Camargo. Ludwig Institute for Cancer Research, Brazil. |
| 11:40 AM - 12:30 PM |
Oral Presentations WM4-WM6 |
| 12:30 PM - 2:00 PM |
Lunch |
| 12:45 PM - 1:45 PM |
The ISCB Open Member Meeting (open to any interested people)
[Loc. Sala Colorada (ground floor)] |
SESSION VI. Functional Genomics and Systems Biology.
[Loc. Auditorium Juan Francisco Fresno (ground floor)] |
| 2:00 PM - 2:40 PM |
Keynote Lecture XI: "Using ‘omics’ data to study regulator-target interactions and organizational principles in networks" |
| Yves van de Peer. University of Ghent, Belgium. |
| 2:40 PM - 3:30 PM |
Oral Presentations WA1-WA3 |
| 3:30 PM - 4:00 PM |
Coffee Break |
| 4:00 PM - 4:40 PM |
Keynote Lecture XII: "On the evolution of PPI networks" |
| Sandro José de Souza. Ludwig Institute for Cancer Research, Brazil. |
| 4:40 PM - 5:30 PM |
Oral Presentations WA4-WA6 |
| 5:30 PM - 6:00 PM |
Awards Ceremony |
| 6:00 PM – 6:30 PM |
Closing Remarks |
| 7:00 PM – 11:30 PM |
Conference Banquet
[Loc. Castillo Hidalgo, Cerro Santa Lucía, Santiago SEE MAP HERE] |
| One day satellite Workshops and Round Tables |
| Day 6: Thursday - March 22, 2012 |
SESSION VII. WorkShops on Next Generation Sequencing Technologies and GRID Computing.
[Loc. Auditorium Aula Magna Eleodoro Matte Ossa (second floor)] |
| 10:00 AM - 11:15 AM |
"Ion Torrent – Open, Accessible, and Enabling" |
| Matt Dyer. Life Technologies, USA. |
| 11:15 AM - 11:30 AM |
Coffee Break |
| 11:30 AM - 12:45 PM |
"Introducing GS FLX+ System" |
| Xuemin Liu. 454 Sequencing/Roche, USA. |
| 12:45 PM - 2:00 PM |
Lunch |
| 2:00 PM - 3:00 PM |
"Optimization of bioinformatics applications to be executed on GRID platforms" |
| Manuel A. Rodríguez-Pascual and Rafael Mayo-García (CIEMAT, Spain; SoIBio, CYTED and FreeBIT) |
| 3:00 PM - 3:20 PM |
Coffee Break |
SESSION VIII. Round Tables on Bioinformatics Research, Training and Education in Iberoamerica.
[Loc. Auditorium Aula Magna Eleodoro Matte Ossa (second floor)] |
| 3:20 PM – 4:20 PM |
"Bioinformatics Education in Iberoamerica" |
| Alejandra Medina-Rivera and Juan Pablo Bustamante (SoIBio Student Council), Daniel ALmonacid and Priscila Grynberg (ISCB Student Council). |
| 4:20 PM – 4:40 PM |
Coffee Break |
| 4:40 PM – 5:40 PM |
"Bioinformatics Research and Training in Iberoamerica" |
| Guilherme de Oliveira (Brazil), Fernán Aguero (Argentina), Javier de las Rivas (Spain), Julio Collado-Vides (México), Allan Orozco (Costa Rica) and Francisco Melo (Chile). |