RSG POSTERS LIST

Updated Nov 17, 2015

Complete list of RSG Poster Abstracts (.pdf) - Click here.
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Poster: P01


Distinct specificities of the androgen and glucocorticoid receptors revealed using feature-based recognition model analysis of SELEX data
Presenting Author: Harmen J. Bussemaker

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Poster: P02

Quantitative modeling of gene expression from sequence, using DNA shape-based model of binding sites
Presenting Author: Pei-Chen Peng

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Poster: P03

Estimating the Number and Diversity of Cancer Mutations In the Overall Population from 5,319 Complete Cancer Genomes
Presenting Author: Ramy Arnaout

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Poster: P04

MiSL: a method for mining synthetic lethal partners of recurrent cancer mutations uncovers novel mutation-specific therapeutic targets
Presenting Author: Subarna Sinha

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Poster: P05

Tracking the Evolution of 3D Gene Organization
Presenting Author: Alon Diament

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Poster: P06

From phenotypic to molecular synergy: A transcriptional study of the dynamics of drug combinations based on single drug responses
Presenting Author: Mehmet Eren Ahsen

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Poster: P07

Three-dimensional analysis of regulatory features reveals functional enhancer-associated loops
Presenting Author: Yao Wang

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Poster: P08

Understanding Breast Cancer Heterogeneity through Personalized Drosophila Models
Presenting Author: Jennifer EL Diaz

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Poster: P09

Creating a library of genome-wide chromatin state patterns during B lymphopoiesis
Presenting Author: Mark Maienschein-Cline

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Poster: P10

Bringing big genomic data into focus for studying complex diseases in specific biological contexts
Presenting Author: Arjun Krishnan

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Poster: P11

Nucleotide Sequence Composition Adjacent to Intronic Splice Sites Improves Splicing Efficiency and Reduces Translation Costs in Fungi
Presenting Author: Zohar Zafrir

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Poster: P12

Multi-omics learning and optimal experimental design for microbial organisms
Presenting Author: Minseung Kim

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Poster: P13

Comparison of Methods to Predict Impact of Regulatory Variants
Presenting Author: Michael Beer

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Poster: P14

High-throughput allele-specific expression across 250 environmental conditions
Presenting Author: Gregory Moyerbrailean

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Poster: P15

Evaluating Genetic Variation Impact on Transcription Factor Binding Sites
Presenting Author: Wenqiang Shi

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Poster: P16

Network model of normal gene expression predicts gene perturbation fold changes
Presenting Author: Sudhir Varma

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Poster: P17

Identifying condition specific transcription factor binding with ATAC-seq
Presenting Author: Roger Pique-Regi

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Poster: P18

An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes
Presenting Author: Qin Ma

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Poster: P19

The CoGAPS matrix factorization algorithm infers feedback mechanisms from therapeutic inhibition of EGFR that increases expression of growth factor receptors
Presenting Author: Elana J. Fertig

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Poster: P20

A network approach to monitor progression of treatment in tuberculosis
Presenting Author: Awanti Sambarey

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Poster: P21

Epigenetic dysregulation of human myogenesis affects time regulated eRNA and associated transposable element expression
Presenting Author: Loqmane Seridi

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Poster: P22

Characterizing the dynamics of enzyme localization
Presenting Author: Pablo Meyer

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Poster: P23

The Systems Toxicology Computational Challenge: Identification of Exposure Response Markers
Presenting Author: Vincenzo Belcastro

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Poster: P24

E-Flux2 and SPOT: Validated methods for inferring intracellular metabolic flux distributions from transcriptomic data
Presenting Author: Min Kyung Kim

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Poster: P25

SetRank: A highly specific tool for pathway analysis
Presenting Author: Cedric Simillion

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Poster: P26

The role of genome accessibility in transcription factor binding in bacteria
Presenting Author: Antonio Gomes

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Poster: P27

Does the overall shape of gene networks differ between cancer and normal states? Towards a comprehensive understanding of cancer system biology by meta-analysis of various cancer transcriptomes
Presenting Author: Pegah Khosravi

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Poster: P28

Comparative Assessment Suite for Transcription Factor Binding Motifs
Presenting Author: Caleb Kipkurui Kibet

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Poster: P29

Loregic: A method to characterize the cooperative logic of regulatory factors
Presenting Author: Daifeng Wang

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Poster: P30

Affymetrix Probesets as Proxies for Mature MicroRNAs
Presenting Author: Rebecca Tagett

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Poster: P31

Non-coding isoforms of coding genes in B cell development and malignancies
Presenting Author: Irtisha Singh

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Poster: P32

Predicting Metabolic Networks through Pairwise Rational Kernels
Presenting Author: Abiel Roche-Lima

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Poster: P33

Measuring and interpreting similarity between scale-free biological networks
Presenting Author: Bingqing Xie

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Poster: P34

Global Functional Annotation and Visualization of the 2015 Yeast Genetic Interaction Network
Presenting Author: Anastasia Baryshnikova

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Poster: P35

Memory of Inflammation in Regulatory T Cells
Presenting Author: Hyunwoo Cho

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Poster: P36

Enhancing the detection of genomic rearrangements to better understand cancer pathology
Presenting Author: Francesca Cordero

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Poster: P37

In-silico Analysis of Circular RNA as Regulators of miRNA
Presenting Author: Nicholas Akers

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Poster: P38

A parallel negative feedback motif exhibits bidirectional control based on differential kinetics in cytokine regulatory networks
Presenting Author: Warren Anderson

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Poster: P39

Sequence biases in CLIP experimental data are incorporated in protein RNA-binding models
Presenting Author: Yaron Orenstein

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Poster: P40

A novel study of the scope and limitations of baker’s yeast as a model organism for human tissue- specific pathways
Presenting Author: Shahin Mohammadi

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Poster: P41

Deciphering single-cell transcriptional heterogeneity to understand principles of neuronal phenotype organization and plasticity
Presenting Author: James Park

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Poster: P42

microRNA-mediated feed forward disinhibition of multiple functional pathways amplifies prohypertensive signaling
Presenting Author: Danielle DeCicco

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Poster: P43

Prioritizing animal models for human diseases using genome-wide functional networks
Presenting Author: Max Homilius

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Poster: P44

Discovery of bruchid resistance-related variations in regulatory regions by genome-wide sequence comparison
Presenting Author: Chien-Yu Chen

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Poster: P45

Empirical Evidence Supporting a Systematic Approach to Gene Network Identification
Presenting Author: Sweta Sharma

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Poster: P46

Dysregulation of co-regulatory microRNA networks by chronic ethanol consumption leads to impaired liver regeneration.
Presenting Author: Austin Parrish

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Poster: P47

Furthering understanding of Parkinson's Disease through integrative analysis in C. elegans
Presenting Author: Victoria Yao

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Poster: P48

Transcription Network Inference using RNA Expression and Degradation Rate Data in S. cerevisiae
Presenting Author: Konstantine Tchourine

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Poster: P49

The optimized high-throughput siRNA screening : Applications in cancer target discovery
Presenting Author: Nayoung Kim

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Poster: P50

MACE: a web-based application for analyzing mutation-specific drug response and gene expression in cancers
Presenting Author: Yourae Hong

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Poster: P51

Reverse engineering gene regulatory networks from structural and epigenetic datasets
Presenting Author: Brittany Baur

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Poster: P52

Alternative Splicing During Heat Stress in Arabidopsis thaliana
Presenting Author: Gaurav Kandoi

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Poster: P53

An integrated computational pipeline for analysing genetic, molecular, and functional variations in complex diseases.
Presenting Author: Bajuna Salehe

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Poster: P54

Exploration of Breast Cancer Genes and Bioinformatics Analyses
Presenting Author: Shahrzad Eslamian

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Poster: P55

Spectral coherence classification of uORF translation in a neuroblastoma cell model of differentiation
Presenting Author: Sang Chun

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Poster: P56

Transcriptional Regulatory Networks During the Endothelial-to-Hematopoietic Transition in the Mouse Embryo
Presenting Author: Long Gao

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Poster: P57

Dynamic organization and activation of enhancers and super-enhancers dictate effector and memory CD8+ T cell responses
Presenting Author: Bing He

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Poster: P58

Data and Computing Platform to facilitate NCER- PD (National Centre of Excellence in Research on Parkinson’s Disease) Project
Presenting Author: Peter Banda

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Poster: P59

Emergent Topological and Statistical Properties of Gene Regulatory Grids
Presenting Author: Wilberforce Zachary Ouma

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Poster: P60

Integrated Feature Detection From Chromatin State Measurements
Presenting Author: Anastasia Shcherban

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Poster: P61

Identifying sequence-dependent regulators of gene expression from a novel massively parallel reporter assay
Presenting Author: Vincent FitzPatrick

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Poster: P62

Characterization of phased, secondary, small interfering RNAs (phasiRNAs) using Machine Learning
Presenting Author: Parth Patel

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Poster: P63

The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer
Presenting Author: H. Tomas Rube

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Poster: P64

Charting the human genome’s regulatory landscape with transcription factor binding site predictions
Presenting Author: Xi Chen

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Poster: P65

Deconvolving discriminative sequence features in overlapping categories of TF binding sites
Presenting Author: Akshay Kakumanu

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Poster: P66

Implementation of a Deep Learning Framework to Predict De Novo Anticancer Drug Activity
Presenting Author: Jose Zamalloa

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Poster: P67

Computational Discovery of Transcription Factors Associated with Drug Response
Presenting Author: Casey Hanson

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Poster: P68

Pervasive variation of transcription factor orthologs contributes to regulatory network divergence
Presenting Author: Shilpa Nadimpalli

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Poster: P69

A Novel Experimental Model Sheds Light on the Mechanism of Host-Gut Microbiome Interactions
Presenting Author: Allison Richards

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Poster: P70

Experimentally identified gene-environment interactions contribute to heritability of complex traits
Presenting Author: Cynthia Kalita

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Poster: P71

A systematic survey of the Cys2His2 zinc finger DNA-binding landscape
Presenting Author: Joshua Wetzel

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Poster: P72

Statistical Algorithms for Motif Discovery on SELEX Data
Presenting Author: Chaitanya Rastogi

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Poster: P73

Interpreting non-coding SNPs and quantifying the value of perturbation experiments using ensembles of biophysical models
Presenting Author:  Farzaneh Khajouei

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Poster: P74

Tissue context improves disease-gene mining from biomedical text
Presenting Authors:  Ruth Dannenfelser and Ran Zhang

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Poster: P75

H3K4me3 downstream of transcription start sites is responsible for transcriptomic modifications in systemic lupus erythematosus
Presenting Author:  Zhe Zhang, The Children's Hospital of Philadelphia, United States

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Poster: P76
Coupled dynamics of drug synergy, gene expression, and alternative splicing in combination therapies of breast cancer
Presenting Author:  Xintong Chen, Icahn Institute for Genomics and Multiscale Biology, Mount Sinai, United States

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Poster: P77
Spatial-temporal gene regulatory network of maize embryo and endosperm development
Presenting Authors:  Wenwei Xiong and Chunguang Du

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Poster: P78
Copy Number Variation Analysis with GROM-RD
Presenting Author:  Joseph Kawash, Rutgers University, United States

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Poster: P79
Probabilistic modeling of multiple ChIP-Seq and open chromatin datasets enables discrimination of direct and indirect binding events
Presenting Author:  Artur Jaroszewicz, UCLA, United States\


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