Go directly to: [Friday - December 13] [Saturday - December 14] | ||
WEDNESDAY – December 11, 2013 |
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START TIME | END TIME | SESSION TYPE |
04:00 pm | 06:00 pm | Registration |
THURSDAY – December 12, 2013 LOCATION: Ballroom |
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START TIME | END TIME | SESSION TYPE |
08:00 am | 09:00 am | Registration |
09:00 am | 09:45 am | Keynote 1 Gary Bader, PhD Associate Professor University of Toronto, Canada Pathway Analysis of Genomics Data – from Correlation to Causation |
09:45 am | 09:55 am | Oral Presentation 1 AssemblSprint: Examining Genome Assemblies of Ion PGM next generation sequencing data from Mycobacterium species Presenting Author: Nabeeh Hasan, University of Colorado, Denver Co-Author(s): Rebecca Davidson, National Jewish Health
Paul Reynolds, National Jewish Health Eveline Farias-Hesson, Life Technologies Michael Strong, National Jewish Health |
09:55 am | 10:05 am | Oral Presentation 2 Host-pathogen interactions and microRNAs Presenting Author: Christian Forst, Icahn School of Medicine at Mount Sinai |
10:05 am | 10:15 am | Oral Presentation 3 Recalibration of p-values for Multiple Testing Problems in Genomics Presenting Author: Dean Palejev, Bulgarian Academy of Sciences Co-Author(s): John Ferguson, University of Limerick
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10:15 am | 10:25 am | Oral Presentation 4 Predicting disease related and pharmacogenes through curated and text-mined annotations Presenting Author: Christopher Funk, University of Colorado Co-Author(s): Lawrence Hunter, University of Colorado
Kevin Cohen, University of Colorado |
10:25 am | 10:45 am | Break |
10:45 am | 11:15 am | Keynote 2 Benjamin Good, Ph.D. Senior Staff Scientist The Scripps Research Institute La Jolla, CA, USA The Cure: A Game with the Purpose of Gene Selection for Breast Cancer Survival Prediction |
11:15 am | 11:25 am | Oral Presentation 5 PAIRpred: A large margin method for partner-specific prediction of protein interfaces Presenting Author: Fayyaz Minhas, Colorado State University |
11:25 am | 11:35 am | Abstract Withdrawn Oral Presentation 6 MP2GO: Inferring Gene Function from Phenotype Presenting Author: Judith Blake, The Jackson Laboratory Co-Author(s): Joao Ascensao, Rice University
Mary Dolan, The Jackson Laboratory David Hill, The Jackson Laboratory |
11:35 am | 11:45 am | Oral Presentation 7 Temporal Expression Recognition for Cell Cycle Phase Concepts in Biomedical Literature Presenting Author: Negacy Hailu, University of Colorado Computational Bioscience Program Co-Author(s): Kevin Cohen, University of Colorado School of Medicine
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11:45 am | 11:55 am | Oral Presentation 8 Analyzing biological networks using degree-of-interest functions Presenting Author: Corinna Vehlow, Visualization Research Center, University of Stuttgart Co-Author(s): Carsten Goerg, University of Colorado Anschutz Medical Campus
David Kao, University of Colorado Anschutz Medical Campus |
11:55 am | 04:00 pm | Ski Break |
04:00 pm | 04:30 pm | Keynote 3 Peter Karp, Ph.D. Director, Bioinformatics Research Group Artificial Intelligence Center SRI International Menlo Park, CA, USA A Flux Balance Analysis Model of E. coli K-12 MG1655 Derived From the EcoCyc Database |
04:30 pm | 04:40 pm | Oral Presentation 9 The Critical Assessment of Function Annotation experiment: a community-wide effort towards a better functional annotation of genes and genomes Presenting Author: Sean Mooney, Buck Institute for Research on Aging Co-Author(s): Predrag Radivojac, Indiana University
Iddo Friedberg, Miami University |
04:40 pm | 04:50 pm | Oral Presentation 10 Conceptual comparison through integrative functional genomics in GeneWeaver.org Presenting Author: Elissa Chesler, The Jackson Laboratory Co-Author(s): Erich J. Baker, Baylor University
Chales Phillips, University of Tennessee Michael Langston, Unviersity of Tennessee |
04:50 pm | 05:00 pm | Oral Presentation 11 Integrative Visualization for Discovery of Phenotype Associations in Clinical and miRNA Data Presenting Author: Michael Hinterberg, University of Colorado-Denver Co-Author(s): Lawrence Hunter, University of Colorado
David Kao, University of Colorado |
05:00 pm | 05:10 pm | Oral Presentation 12 Evolution of palmitoyl acyl transferases (PATs) in apicomplexa Presenting Author: Swapna Seshadri, Research Institute, Hospital for Sick Children Co-Author(s): John Parkinson, Research Institute, Hospital for Sick Children Tim Gilberger, McMaster University |
05:10 pm | 05:30 pm | Break |
05:30 pm | 06:00 pm | Keynote 4 Chijioke O. Elekwachi, Ph.D. University of Nottingham, UK eMBRLitMine and eMBRHelper: Bioinformatics Approaches for Improved Microbial Bioremediation Outcomes |
06:00 pm | 06:10 pm | Oral Presentation 13 From Sample to Answer - Sequencing in the Cloud Era with the Illumina BaseSpace® Bioinformatics Platform Presenting Author: Raymond Tecotzky, Illumina |
06:10 pm | 06:20 pm | Oral Presentation 14 MSProcess – Summarization, Normalization, and Diagnostics for Processing of Mass Spectrometry Based Metabolomic Data Presenting Author: Katerina Kechris, University of Colorado Denver Co-Author(s): Grant Hughes, University of Colorado Denver
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06:20 pm | 06:30 pm | Oral Presentation 15 Metabolic Reconstruction Identifies Strain-Specific Regulation of Virulence in Toxoplasma gondii Presenting Author: Nirvana Nursimulu, University of Toronto |
07:00 pm | 10:00 pm | Banquet, Thursday, December 12, 2013 Location: Il Poggio Restaurant Snowmass Village (Transportation provided from Viceroy Hotel Lobby beginning at 6:45pm) |
FRIDAY – December 13, 2013 LOCATION: Ballroom |
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START TIME | END TIME | SESSION TYPE |
08:00 am | 05:30 pm | Registration |
09:00 am | 09:45 am | Keynote 5 Melissa Haendel, PhD Assistant Professor Oregon Health & Science University Oregon, USA Tales from the Crypt: Do You Know Where Your Data Has Been? |
09:45 am | 09:55 am | Oral Presentation 16 Introducing Computations in Biology/Bioinformatics – An Undergraduate Perspective Presenting Author: Maheen Kibriya, Chapman University Co-Author(s): Shehzein Khan, Chapman University
Louis Ehwerhemuepha, Chapman University |
09:55 am | 10:05 am | Oral Presentation 17 A Corpus-Based Study of Temporal Relations in Clinical Text Presenting Author: Natalya Panteleyeva, University of Colorado Co-Author(s): Lawrence Hunter, University of Colorado
Kevin Cohen, University of Colorado |
10:05 am | 10:15 am | Oral Presentation 18 Building an optimally informative machine-learning model of gene regulatory control Presenting Author: Molly Megraw, Oregon State University |
10:15 am | 10:25 am | Oral Presentation 19 Characterizing Unknown Viral Genes Through Metabolomics Presenting Author: Tiffany Liang, San Diego State University |
10:25 am | 10:45 am | Break |
10:45 am | 10:55 am | Oral Presentation 20 GeneSeer Aids Drug Discovery by Exploring Evolutionary Relationships Between Genes Across Genomes Presenting Author: Douglas Fenger, Dart NeuroScience Co-Author(s): Matthew Shaw, Dart NeuroScience
Philip Cheung, Dart NeuroScience Tim Tully, Dart NeuroScience |
10:55 am | 11:05 am | Oral Presentation 21 The Human Gene Connectome Server: an Online Tool for Prioritizing Genes by Biological Distance Presenting Author: Yuval Itan, The Rockefeller University Co-Author(s): Mark Mazel,
The Rockefeller University Benjamin Mazel, The Rockefeller University Avinash Abhyankar, New York Genome Center Bertrand Boisson, The Rockefeller University Patrick Nitschke, INSERM Lluis Quintana-Murci, Pasteur Institute Laurent Abel, INSERM Shen-Ying Zhang, The Rockefeller University Jean-Laurent Casanova, The Rockefeller University |
11:05 am | 11:15 am | Abstract Withdrawn Oral Presentation 22 Type I Error Rate Analysis of Methods for Correlated Binary Outcomes Presenting Author: Aarti Munjal, University of Colorado Denver Co-Author(s): Jacqueline Johnson, University of North Carolina at Chapel Hill
Sarah Kreidler, University of Colorado Denver Deborah Glueck, University of Colorado Denver Keith Muller, University of Florida |
11:15 am | 11:25 am | Oral Presentation 23 An Optimal Metabolic Route Search Tool: RouteSearch Presenting Author: Mario Latendresse, SRI International |
11:25 am | 11:35 am | Oral Presentation 24 Computational and Mathematical Modeling of the segmentation genes of Honeybee (Apis Mellifera) Presenting Author: Maryam Bagher Oskouei, University of Otago Co-Author(s): Brendan McCane, University of Otago
Peter Dearden, University of Otago |
11:35 am | 12:05 pm | Keynote 6 Greg Carter, Ph.D. The Jackson Laboratory Bar Harbor, ME USA Modeling Genetic Complexity with Integrated Interaction Analysis across Multiple Phenotypes |
12:05 pm | 04:00 pm | Ski Break |
04:00 pm | 04:30 pm | Keynote 7 Catherine Lozupone, Ph.D. Anschutz Medical Campus Aurora, CO USA Application of Network Analysis to the Human Gut Microbiota and Use of Comparative Genomics to Understand the Driving Factors of Microbial Associations |
04:30 pm | 04:40 pm | Oral Presentation 25 Improved RNAi interference target sequencing (RIT-seq) enables dissection of cellular function in Trypanosome brucei Presenting Author: Jonathan Wilkes, University of Glasgow Co-Author(s): Graham Hamilton, University of Glasgow
Richard McCulloch, University of Glasgow |
04:40 pm | 04:50 pm | Oral Presentation 26 What you did not know your transcription factor was doing Presenting Author: Mary Allen, University of Colorado Co-Author(s): Justin Freeman, University of Colorado Hestia Mellert, University of Colorado Joaquin Espinosa, University of Colorado Robin Dowell, University of Colorado |
04:50 pm | 05:00 pm | Oral Presentation 27 Linking genotype and enterotype in inflammatory bowel disease Presenting Author: Dan Knights, University of Minnesota Co-Author(s): Mark Silverberg, University of Toronto Rinse Weersma, University Medical Center Groningen Dirk Gevers, Broad Institute of Harvard and MIT Gerard Dijkstra, University Medical Center Groningen Hailiang Huang, Massachusetts General Hospital Andrea Tyler, Mount Sinai Hospital Suzanne von Sommeren, University Medical Center Groningen Floris Imhann, University Medical Center Groningen Joanne Stempak, Mount Sinai Hospital Caitlin Russell, Massachusetts General Hospital Jenny Sauk, Massachusetts General Hospital Jo Knight, University of Toronto Mark Daly, Massachusetts General Hospital Curtis Huttenhower, Harvard School of Public Health Ramnik Xavier, Massachusetts General Hospital |
05:00 pm | 05:10 pm | Oral Presentation 28 Probing chromatin with digestion assays: from static nucleosome positioning to dynamic response Presenting Author: Michael Tolstorukov, Massachusetts General Hospital |
05:10 pm | 05:20 pm | Oral Presentation 29 GIST – an ensemble approach to the taxonomic classification of metatranscriptomic reads Presenting Author: John Parkinson, Hospital for Sick Children Co-Author(s): Geoffrey Halliday, University of Toronto
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05:20 pm | 05:30 pm | Oral Presentation 30 Comparative metagenomics by cross-assembly Presenting Author: Bas Dutilh, Radboud University Medical Centre Co-Author(s): Rob Edwards, San Diego State University
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05:30 pm | 07:30 pm | Poster Session |
SATURDAY – December 14, 2013 LOCATION: Ballroom |
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START TIME | END TIME | SESSION TYPE |
08:00 am | 11:30 am | Registration |
09:00 am | 09:30 am | Keynote 8 Kirk E. Jordan, PhD IBM Distinguished Engineer Emerging Solutions Executive & Assoc. Program Director Computational Science Center IBM T.J. Watson Research Cambridge, MA, USA Solving Life Sciences Problems Requires Systems that Optimize the Workflow |
09:30 am | 09:40 am | Oral Presentation 31 An Update on KaBOB: towards an integrated knowledge base of biomedicine Presenting Author: Kevin Livingston, University of Colorado Co-Author(s): Michael Bada, University of Colorado
William Baumgartner, University of Colorado Lawrence Hunter, University of Colorado |
09:40 am | 09:50 am | Oral Presentation 32 Hypernetworks: the Future of Network Modeling Presenting Author: Debra Goldberg, University of Colorado Boulder |
09:50 am | 10:00 am | Oral Presentation 33 The changing view of protein interaction networks based on data availability Presenting Author: Barrett Hostetter-Lewis, California State University, Chico Co-Author(s): Todd A Gibson, California State University, Chico
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10:00 am | 10:10 am | Oral Presentation 34 Experimental Determination of Useful and Informative Visualizations of Microbial Ecology Data for Public and Scientific Audiences Presenting Author: Megan Pirrung, University of Colorado |
10:10 am | 10:20 am | Oral Presentation 35 Modeling Transcriptional Regulation through simulation of the dynamic changes in DNA binding factor configuration Presenting Author: David Knox, University of Colorado Anschutz Medical Campus Co-Author(s): Robin Dowell, University of Colorado Boulder |
10:20 am | 10:30 am | Oral Presentation 36 Deletion of COX-2 is associated with reduced expression of rgl1: relevance to chemopreventative effect of COX-2 inhibitors Presenting Author: Nicholas Kirkby, Imperial College London Co-Author(s): Jane Mitchell, Imperial College London |
10:30 am | 10:50 am | Break |
10:50 am | 11:00 am | Oral Presentation 37 Prioritizing hypotheses for epigenetic mechanisms in Huntington’s Disease using an e-Science approach Presenting Author: Eleni Mina, Leiden University Medical Center |
11:00 am | 11:10 am | Oral Presentation 38 Variance component score test in a mixed-effects model framework to map tissue-specific eQTL Presenting Author: Chaitanya Acharya, Duke University Co-Author(s): Andrew Allen, Duke University
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11:10 am | 11:20 am | Oral Presentation 39 High Throughput Phenotype Profiling for Bacterial Flux-Balance Model Optimization Presenting Author: Daniel Cuevas, San Diego State University Co-Author(s): Rob Edwards, San Diego State University
Daniel Garza, Evandro Chagas Institute Savannah Sanchez, San Diego State University |
11:30 am | Closing | |
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