Great Lakes Bioinformatics Conference 2015
POSTER PRESENTATIONS
SCHEDULE (As of May 17, 2015. Subject to change without notice): There are TWO poster sessions at GLBIO: A and B.
- Poster Session A - Tuesday, 5:30pm - 7:00pm
- Poster Sessions B - Wednesday, 10:00am - 11:30am
(Click here to go directly to Poster Sessions B)
Poster Sessions A - Tuesday, 5:30pm - 7:00pm |
Poster 1
Identification of novel therapeutics for complex diseases from genome-wide association data
Mani P. Grover, Sara Ballouz, Tamsyn Crowley, R.A. George, Craig Sherman, and Merridee Wouters
Poster 3
PyMine: a PyMOL plugin to integrate and visualize data for drug discovery
Rajan Chaudhari and Zhijun Li
Poster 5
GROM: Parameter and coordinate file editor for GROMACS
Hovakim Grabski
Poster 7
Genome-scale identification and characterization of moonlighting proteins
Ishita Kamal Khan and Daisuke Kihara
Poster 9
Global versus local biological network alignment: which one is better?
Lei Meng, Aaron Striegel, and Tijana Milenkovic
Poster 11
GREAT: GRaphlet Edge-based network AlignmenT
Joseph Crawford and Tijana Milenkovic
Poster 13
Network-based protein function prediction: implications for aging
Fazle Faisal, Han Zhao, and Tijana Milenkovic
Poster 15
Chemical modification of tryptic peptides enhances peptide identification in shotgun proteomics
Sujun Li, Predrag Radivojac, Haixu Tang, Aditi Dabir, Santosh Misal, and James Reilly
Poster 17
Inferring the structural functional and phenotypic consequences of amino acid substitutions
Vikas Pejaver, Sean Mooney, and Predrag Radivojac
Poster 19
MMiRNA-Tar: A correlation and target prediction analysis tool for microRNA and mRNA expression datasets
Yang Liu, Cameron Meyer, Joshua Stolz, Gary Stuart, and Yongsheng Bai
Poster 21
PhyloPro2.0: web-based tools for the generation and visualization of phylogenetic profiles and domain architectures across Eukarya
Graham Cromar, Anthony Zhao, Xuejian Xiong, Swapna Seshadri, Noeleen Loughran, and John Parkinson
Poster 23
ORFanFinder server: toward automated identification of taxonomically restricted orphan genes
Yanbin Yin and Alex Ekstrom
Poster 25
Population scale human genome analysis on the cloud
Peter White
Poster 27
An integrative approach for gene annotation
Rasiah Loganantharaj
Poster 29
Modeling predicts NADPH oxidase complex structure modifications due to SLE-associated NCF2 mutations
Don Armstrong Miriam Eisenstein Raphael Zidovetzki and Chaim Jacob
Poster 31
Developing a new in silico pipeline for faster drug discovery
Jonathan Chen and Donald P. Visco Jr.
Poster 33
Trending topics in Bioinformatics: tracking changes over time and space
Nanda Kishore, Adapa Parvathi Chundi, and Dario Ghersi
Poster 35
Location prediction and phylogenetic analysis of miRNA in avian genome
Mustafa Broachwala and Dr. Sushma Reddy
Poster 37
Identification of signature sequences for molecular detection and identification of foodborne pathogens
Mark Mammel, Isha Patel, Jayanthi Gangiredla, David Lacher, Keith Lampel, and Chris Elkins
Poster 39
Eliciting epidemiological characteristics of H5N1 endemic in waterfowl
Neil Giridharan and Dhananjai Rao
Poster 41
A hirerachical Bayesian model for differentially expressed isoform detection from multiple biological replicates
Yifan Yang, Hao Peng, and Yuan Qi
Poster 43
VirusLand: Expedient processing of viral metagenomes from assembly to analysis
Joshua Haselton
Poster 45
Which anopheles mosquito genes are most important in promoting malaria transmission?
Yosi Shibberu, Geletaw Sahle, Zelalem Hailu, Abebe Asale, and Alemayehu Shiferaw
Poster 47
Palindromic enrichment of CRISPRs in metagenomic data sets
Abraham Moller and Chun Liang
Poster 49
MPatViewer: a MATLAB pattern viewer for DNA or RNA sequences that utilizes primer numbers
Sutharzan Sreeskandarajan, Abraham Moller, Kai Wang, John Karro, and Chun Liang
Poster 51
Structural analysis of B-cell epitopes to guide vaccine design
Saba Ferdous and Andrew Martin
Poster 53
Data pooling to identify differentially expressed genes in lung cancer of nonsmokers
Nicole Carr and Sadik Khuder
Poster 55
Identification of novel carbon transport genes in maize using bulked segregant analysis and next-generation sequencing
David Huizinga and Clifford Weil
Poster 57
Understanding stop loss, stop gain, and frameshift mutations
Kymberleigh Pagel, Vikas Pejaver, Guan Ning Lin, Lilia Iakoucheva, Sean Mooney, and Predrag Radivojac
Poster 59
Genomic and proteomic analysis of propane degradation pathways in bacterial strains
Hisako Masuda and Peter Tupa
Poster 60
Parallel algorithms for fuzzy cell classification
Samuel Schmidt and Jeremy Cox
Poster 61
Application of semi-supervise learning in Genome Wide Association Studies (GWAS) for melanoma
Hima Bindu Yalamanchili, Michael L. Raymer and Michael P. Markey
Poster 63
New metrics for learning and inference on sets and functions
Ruiyu Yang, Jovana Kovacevic, Matthew Hahn, Elizabeth Housworth, andPredrag Radivojac
Poster 65
On optimizing a computational pipeline for analysis of lung microbiome
Jeremy Cox, Melanie Cushion, and Aleksey Porollo
Poster 67
Epigenetics information improves genome wide motif discovery
Yichao Li and Lonnie Welch
Poster 69
Analysis of gene expression data in cancer patients
Thomas Wynn
Poster 71
Studying the role of two component regulatory systems in virulence regulation in streptococcus pyogenes and staphylococcus epidermidis
Alexander Thorman, Andrew Herr, Jarek Meller, and Malak Kotb
Poster 73
Inferring gene interactions using Bayesian networks
Anthony Deeter
Poster 75
Modeling the interaction interface of the TBEV restriction factor TRIM79α and the flavivirus NS5
Heather Brown, Xiche Hu, and R. Travis Taylor
Poster 77
Evolution of a bacterial global regulator
Yvette Unoarumhi, Robert Blumenthal and Jyl Matson
Poster 79
Bioinformatics analysis combined microarray identify mutations in nonsense-mediated mRNA decay (NMD) in Breast Cancer
Shahrzad Eslamian
Poster 81
Consequences of simulated biologically realistic processes for population genetic structure
Scott Thomas
Poster 83
An analysis of microbial involvement in biospeleogenesis within lechuguilla cave system
Garrett Sonntag, Hazel Barton and Max Wisshak
Poster 85
Identification of protein-protein interaction sites between HIV-1 reverse transcriptase and integrase using coevolutionary analysis
Madara Hetti-Arachchilage, Kendall Furbee, and Helen Piontkivska
Poster 87
Molecular characterization of surgically induced cervical syringomyelia
Ashley Wilkinson-Mohrman, Mahmoud Farrag, Stephanie Haft, He Huang, Leah Shriver and Nic Leipzig
Poster 89
Finding time-patterns in temporal gene expression data
Guenter Tusch, Raveena Pedyam, Shahrzad Eslamian, Swati Gupta and Christopher Theisen
Poster 91
RNA-Seq to study music perception
Preethy Sasidharan Nair, Anju Philips, Harri Lähdesmäki, and Irma Järvelä
Poster 93
A multi-layers network framework for clustering high-throughput biological data across species
Koon-Kiu Yan, Daifeng Wang, Paul Muir, Joel Rozowsky, and Mark Gerstein
Poster 95
An ant colony pairwise alignment based on the simplified grid
Xinyuan Zhou and Dachao Li
Poster 97
SNPGenie: a software platform for detecting natural selection in pooled next-generation sequencing samples
Chase W. Nelson and Austin L. Hughes
Poster 99
Towards efficient clustering of genomic data
Surbhi Bhatnagar and Jaroslaw Meller
Poster 101
Alternative splicing and mutations of splicing factors and their implications in acute myeloid leukemia
Meenakshi Venkatasubramanian and Nathan Salomonis
Poster 103
Implicating a multi-cellular interactome that integrates cell-specific differentiation, branching morphogenesis, and vascular and organ-scale patterning during the saccular phase of lung development
Yunguan Wang, Anil Jegga, Eric Brunskill, Steven Potter, Jeffery Whitsett, and Bruce Aronow
Poster 105
Bioinformatics multidimensional data viewing and analysis with parallel coordinates
Alexander Addy, Zhong-Hui Duan, and Yingcai Xiao
Poster 107
Structure-based prediction of homeodomain binding site specificity using an integrative energy function
Alvin Farrel and Jun-Tao Guo
Poster 109
PhagePhisher: a method for the location of occult viral sequences in complex genomic datasets
Thomas Hatzopoulos, Catherine Putonti and Siobhan Watkins
Poster 111
SeqOnce: Flexible mobile entrez database search app
Fathi Mubaraki
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Poster Sessions B - Wednesday, 10:00am - 11:30am |
Poster 2
Development of ProtSecKB: the protist secretome and subcellular proteome knowledgebase
Brian Powell Xiangjia Min Vamshi Amerishetty John Meinken Feng Yu and Chester Cooper
Poster 4
Protein side-chain conformation prediction methods are accurate in different residue environments
Lenna Peterson Xuejiao Kang and Daisuke Kihara
Poster 6
Functional characterization of healthy adult human brain and its application to study neurological disorders
Simarjeet Negi and Babu Guda
Poster 8
PL-PatchSurfer2.0: A fast virtual screening program using surface patch based on 3D Zernike descriptors
Woong-Hee Shin and Daisuke Kihara
Poster 10
Fitting of multiple protein chains by iterative manipulation of Cry-EM maps
Lyman Monroe and Daisuke Kihara
Poster 12
MAGNA++: Maximizing accuracy in global network alignment via both node and edge conservation
Vipin Vijayan Vikram Saraph and Tijana Milenkovic
Poster 14
Understanding how endosymbiosis of a bacterium changes the metabolic potential of the pathologic nematodes Onchocerca volvulus and Loa loa
Nirvana Nursimulu Swapna Lakshmipuram Seshadri and John Parkinson
Poster 16
Modified regularized markov clustering for community detection in attributed networks
Rachael Blair and Han Yu
Poster 18
SEGEL: a database of smoking effects on human lung gene expression
Yin Lu Yan Xu and Feng Cheng
Poster 20
Hypergraphs for complex biological networks
Graham Cromar Alex Yang Anthony Zhao and John Parkinson
Poster 22
Diffhunter: A general scalable framework for comparing genome-wide protein occupancy profiles to study protein-RNA interactomes Seyedsasan Hashemikhabir, Vishal Kumar Sarsani, and Sarath Chandra Janga
Poster 24
Combination of data pre-processing and principal component analysis improves the characterization of biological data
Bin Xue
Poster 26
Detecting fossils of horizontal gene transfer between symbiotic species
Jonathon Brenner and Catherine Putonti
Poster 28
TophatFusion FusionCatcher and Genomon
Morris Chukhman, Mark Maienschein-Cline, Cong Liu, Morris Chukhman, Hui Lu, Zhengdeng Lei, Pinal Kanabar, Oleksiy Karpenko, Georgi Genchev, and Neil Bahroos
Poster 30
Application of healthy human brain gene expression model to study neurological disorders
Simarjeet Negi and Babu Guda
Poster 32
Predicting protein druggability using only sequence composition
Gaurav Kandoi Marcio Luis Acencio and Ney Lemke
Poster 34
Metabolic dysregulation in the cuprizone multiple sclerosis model
Alexandra Taraboletti and Leah Shriver
Poster 36
A comparative analysis of the genetic relationships between the pathogens of Ebola Haemorrhagic Hever, Marburg virus, HIV, Hepatitis A, Hepatitis B, Hepatitis C, Hepatitis D, and Hepatitis E
Olaitan Awe, Segun Fatumo, Olugbenga Oluwagbemi, and Angela Makolo
Poster 38
COMET ("COalescence with multiple mergers employing thermodynamic integration")
Edward Salinas, John Horne, and Rita Castilho
Poster 40
Expression analysis of affinity isolated glial-nuclei from Drosophila larvae
Jingqun Ma and Vikki Weake
Poster 42
Bioinformatic identification and analysis of extensins in the plant kingdom
Xiao Liu, Richard Wolfe, Lonnie Welch, and Allan Showalter
Poster 44
Characterizing the Source-Sink dynamics of Tomato Yellow Leaf Curl Virus (TYLCV) using Bayesian phylogeography methods
Batsirai Mabvakure, Gordon Harkins, and Leendert Cloete
Poster 46
CT-Finder: a web service for designing single and paired guide RNA for CRISPR/Cas9 system
Houxiang Zhu, Lauren Misel, and Chun Liang
Poster 48
Mirpro: a novel program for differential expression and variation analysis of miRNAs
Jieming Shi, Lei Li, Min Dong, Lin Liu, Agustin Madrigal, Katia Del Rio-Tsonis, and Chun Liang
Poster 50
Prediction of piRNAs using transposon interaction and a support vector machine
Kai Wang, Chun Liang, and Fei Li
Poster 52
Workflow configurations for high throughput human variant calling
Liudmila Sergeevna Mainzer, Arjun Prasanna Athreya, Subho Sankar Banerjee, Ravishankar Iyer, Volodymyr Kindratenko, and Victor Jongeneel
Poster 54
Detecting double-stranded RNA viruses in infected host cells
Mark Maienschein-Cline, Pinal Kanabar, Zhengdeng Lei, Morris Chukhman, Neil Bahroos, Stefan Green, and Howard Lipton
Poster 56
A pathway-based genomic classifier for prediction of gastric cancer subtypes
Zhengdeng Lei, Pinal Kanabar, Mark Maienschein- Cline, Oleksiy Karpenko, Morris Chukhman, and Neil Bahroos
Poster 58
A novel alignment-free searching algorithm for fusion gene detection from RNA-Seq short reads
You Li and Chittibabu Guda
Poster 62
Agent-based simulation of stable host-pathogen communities
Roy Williams and Amar Das
Poster 64
Classification of breast cancer tumors based on somatic mutation profiles
Suleyman Vural, Xiaosheng Wang, and Chittibabu Guda
Poster 66
Synergistic regulatory function of driver and passenger strands in MicroRNA-574
Qiuqing Wang and Peng Yao
Poster 68
Comparison of methods for estimating tissue components in mixed-tissue samples
Xuerong Liu, Xiao-Qin Xia, Sujay Datta, and Zhenyu Jia
Poster 70
Comparative analysis of gene expression profiles perturbed by lupus inducing drugs
Frazier Baker and Aleksey Porollo
Poster 72
Improving SNV validation of Ion-based sequence data by using GATK metrics
Rodrigo F Ramalho, Renan Valieris, Claudia Andrade, Bruna Barros, Elisa Napolitano, Jorge de Souza, Sandro de Souza, and Dirce Carraro
Poster 74
Computational tools for avian transcriptomics
Kelly Boyd, Emma Highland, Amanda Misch, Catherine Putonti, and Sushma Reddy
Poster 76
Light alters several wave-associated spiking properties of retinal ganglion cells
Daniel Vicarel and Jordan Renna
Poster 78
Connecting Alzheimer’s disease, Parkinson’s disease, and type 2 diabetes through disease network models and enrichment analyses
Walter Jessen, James Sefton, Jodilyn Phillips, and Bruce Gitter
Poster 80
Effects of bench height variation on muscle activation in pianists
Sarah Welch
Poster 82
An analysis of microbial communities present in brewery water source
Olivia S. Hershey and Hazel A. Barton
Poster 84
Integrative molecular characterization of glioblastoma
Kristin Wipfler and Chittibabu Guda
Poster 86
No longer a neglected tropical disease: Molecular evolution of Ebola informed by the latest epidemic
Mary Halpin and Helen Piontkivska
Poster 88
Global peak alignment for comprehensive two-dimensional Gas Chromatography coupled with Mass Spectrometry (GC×GC-MS)
The-Minh Tran, Hengguang Li, Xiang Zhang, and Seongho Kim
Poster 90
An interface to search time-oriented functional genomics databases
Guenter Tusch, Swati Gupta, Shahrzad Eslamian, Raveena Pedyam, and Christopher Theisen
Poster 92
A dynamic model for glucocorticoid receptor-induced gene expression time courses
Samuel Hokin and M. Kathryn Barton
Poster 94
The structural dynamic effects of inhibitor binding to protein kinase C βII
Shashank Jariwala, Sivaraj Sivaramakrishnan, and Barry Grant
Poster 96
Whole genome methylation analysis of Arabidopsis silencing mutants shows a broad role for mRNA-derived siRNAs in methylation of transposons
Kaushik Panda, Lexiang Ji, Drexel A Neumann, Andrea D McCue, Sarah Choudury, Robert J Schmitz, and R Keith Slotkin
Poster 98
Isogenic modeling of RBM20 disease mutations in iPS cells to define direct splicing targets
Aishwarya Kulkarni and Nathan Salomonis
Poster 100
Development of a text-Based classifier tool to identify immunology-related NIH Grants
Fenglou Mao, Charles Hackett, Daniel Rotrosen, and Dawei Lin
Poster 102
Flexible protein structure alignment method based on the residue-residue interaction
Genki Terashi and Mayuko Takeda-Shitaka
Poster 104
Assessment of gene 3’ untranslated region (3’UTR) expression in Neuroplasticity
Benjamin Harrison, Jeff Petruska, and Eric Rouchka
Poster 106
Functional basis of microorganism classification
Chengsheng Zhu, Tom Delmont, Timothy Vogel, and Yana Bromberg
Poster 108
Gene identification and strain classification using Random Forests
John Santerre, Sebastien Boisvert, Jim Davis, Fangfang Xia, and Rick Stevens
Poster 110
Zebrafish Leptin a morpholino-knockdown vs. rescue microarray comparative gene expression analysis
Matthew Tuttle, Mark Dalman, and Richard Londraville