Evolutionary Computation in Bioinformatics

ISBN: 1558607978

Author(s): Gary B. Fogel, David W. Corne


    PART I - Introduction to the Concepts of Bioinformatics and Evolutionary Computation

  1. An Introduction to Bioinformatics for Computer Scientists (David W. Corne and Gary B. Fogel)
  2. An Introduction to Evolutionary Computation for Biologists (Gary B. Fogel and David W. Corne)

    PART II - Sequence and Structure Alignment

  3. Determining Genome Sequences from Experimental Data Using Evolutionary Computation (Jacek Blazewic and Marta Kasprzak)
  4. Protein Structure Alignment Using Evolutionary Computation (Joseph D. Szustakowski and Zhipeng Weng)
  5. Using Genetic Algorithms for Pairwise and Multiple Sequence Alignments (CÈdric Notredame)

    PART III - Protein Folding

  6. On the Evolutionary Search for Solutions to the Protein Folding Problem (Garrison W. Greenwood and Jae-Min Shin)
  7. Toward Effective Polypeptide Structure Prediction with Parallel Fast Messy Genetic Algorithms (Gary B. Lamont and Laurence D. Merkle)
  8. Application of Evolutionary Computation to Protein Folding with Specialized Operators (Steffen Schulze-Kremer)

    PART IV - Machine Learning and Inference

  9. Identification of Coding Regions in DNA Sequences Using Evolved Neural Networks (Gary B. Fogel, Kumar Chellapilla, and David B. Fogel)
  10. Clustering Microarray Data with Evolutionary Algorithms (Emanuel Falkenauer and Arnaud Marchand)
  11. Evolutionary Computation and Fractal Visualization of Sequence Data (Dan Ashlock and Jim Golden)
  12. Identifying Metabolic Pathways and Gene Regulation Networks with Evolutionary Algorithms (Junji Kitagawa and Hitoshi Iba)
  13. Evolutionary Computational Support for the Characterization of Biological Systems (Bogdan Filipic and Janez Strancar)

    PART V - Feature Selection

  14. Discovery of Genetic and Environmental Interactions in Disease Data Using Evolutionary Computation (Laetitia Jourdan, Clarisse Dhaenens, and El-Ghazali Talbi)
  15. Feature Selection Methods Based on Genetic Algorithms for in Silico Drug Design
    (Mark J. Embrechts, Muhsin Ozdemir, Larry Lockwood, Curt Breneman, Kristin Bennet, Dirk Devogelaere, and Marcel Rijkaert)
  16. Interpreting Analytical Spectra with Evolutionary Computation (Jem J. Rowland )

    Appendix: Internet Resources for Bioinformatics Data and Tools

Hardback, 450 pages; September 2002; Morgan Kaufmann