10:15 AM - 10:20 AM3D Genome: Session Overview and Introductions
10:20 AM - 11:00 AMImpact of structural variants on 3D genome structure in cancer cellsFeng Yue, Penn State, PA , United States
11:00 AM - 11:10 AMIdentification of locus-specific changes in chromosome conformation between cell types reveals enrichment of enhancersLila Rieber, The Pennsylvania State University, United States
11:10 AM - 11:20 AMIdentification of differential TADs across conditions and cell linesTao Yang, The Pennsylvania State University, United States
11:20 AM - 11:30 AMUnlocking the TAD: Chromatin folding with CHROMATIXAlan Perez-Rathke, University of Illinois at Chicago, United States
11:30 AM - 11:40 AMSPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWASSerhan Yılmaz, Bilkent University, Turkey
11:40 AM - 11:50 AMA graph-regularized non-negative matrix factorization method to discover organizational units of chromosomesDa-Inn Lee, University of Wisconsin-Madison, United States
11:50 AM - 12:00 PMTreeHiC: Hierarchical testing for differential chromatin interaction analysisYe Zheng, University of Wisconsin-Madison, United States
12:00 PM - 12:40 PMContinuous-trait probabilistic model for comparing nuclear genome organization of multiple species
2:00 PM - 2:40 PMHigh-resolution analysis of chromatin conformation capture dataMathieu Blanchette, McGill University , Canada
2:40 PM - 2:45 PMFIND: difFerential chromatin INteractions Detection using a spatial Poisson processMohamed Nadhir Djekidel, Tsinghua University, China
2:45 PM - 2:50 PMChromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatinAsa Thibodeau, Jackson Laboratory, United States
2:50 PM - 2:55 PMHiCAGE: an R package for large-scale annotation and visualization of 3C-based genomic dataMichael Workman, Cedars-Sinai Medical Center, United States
2:55 PM - 3:00 PMCompartmentExplorer: an accurate method for genomic compartments prediction from 3D genome dataHaitham Ashoor, The Jackson Laboratory for Genomic Medicine, United States
3:00 PM - 3:10 PMFitHiChIP: Statistical analysis of high-resolution HiChIP and PLAC-seq dataSourya Bhattacharyya, La Jolla Institute for Allergy and Immunology, United States
3:10 PM - 3:20 PMConserved CTCF binding sites act as allosteric hotspots: A computational knock-out study using nC-SAC modelGamze Gursoy, Yale University, United States
3:20 PM - 4:00 PMModeling and predicting the 3D genomeWilliam Noble, University of Washington, United States
4:40 PM - 5:20 PMConnections between the structure and function of 3D genome folding Geoff Fudenberg, UC San Francisco, CA , United States
5:20 PM - 5:30 PMNuclear topology modulates the mutational landscapes of cancer genomesSubhajyoti De, Rutgers University, United States
5:30 PM - 5:40 PMComputational Detecting Cancer-associated Disorders of Chromatin Interactions from ChIA-PET dataYong Chen, The University of Texas at Dallas, United States
5:40 PM - 5:45 PMIn silico modelling of longevity in Drosophila – a network approachBethany Hall, Nottingham Trent University, United Kingdom
5:45 PM - 5:50 PMChromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplingsShe Zhang, University of Pittsburgh, United States
5:50 PM - 5:55 PMmHi-C: robust leveraging of multi-mapping reads in Hi-C analysisYe Zheng, University of Wisconsin-Madison, United States
5:55 PM - 6:00 PMIn silico prediction of high resolution chromosomal contact counts in multiple cell linesBrittany Baur, University of Wisconsin-Madison, United States