| SubmissionId |
Title |
Submitter Decision |
Poster Presenter |
Talk Presenter |
Track (From EasyChair) |
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| 3 | Unraveling the molecular mechanism of interactions of the Rho GTPases Cdc42 and Rac1 with the scaffolding protein IQGAP2 | Yes-Talk only | |
Emine Sıla Özdemir |
3DSIG COSI |
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| 6 | Macromolecular Assemblies Visualization and Analysis with UCSF Chimera in Supercomputers | No | |
|
3DSIG COSI |
| 44 | Chiral Graphs as Reduced Representations of Ligand Scaffolds for Stereoselective Drug Discovery and Enhanced Exploration of Chemical Scaffolds Space | Yes-Talk and Poster | Ravi Abrol |
Ravi Abrol |
3DSIG COSI |
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| 63 | Experimentally guided computational antibody affinity maturation with de novo docking modelling and rational design | No | |
|
3DSIG COSI |
| 64 | SuCOS: a pharmacophoric-shape overlap metric for comparing binding modes | Yes-Talk and Poster | Susan Leung |
Susan Leung |
3DSIG COSI |
| 70 | Energetic conflicts in catalytic sites of protein enzymes | Yes-Talk and Poster | R. Gonzalo Parra |
R. Gonzalo Parra |
3DSIG COSI |
| 72 | Ligand binding site structure shapes allosteric signal transduction and the evolution of allostery in protein complexes. | Yes-Poster only | Gyorgy Abrusan |
|
3DSIG COSI |
| 73 | Computational Analysis of Atomic Trajectories in Domains of Proteins Causing Lung Cancer | Yes-Poster only | Rizwan Qureshi |
|
3DSIG COSI |
| 74 | IN SILICO ANALYSIS AND MOLECULAR DOCKING OF A NEUROTOXIC POLYPEPTIDE MODELED FROM CONSERVED ORTHOLOGOUS SEQUENCES FROM ELAPIDS THREE FINGERS TOXINS | Yes-Poster only | Rose Bonilla |
|
3DSIG COSI |
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| 78 | Strategies to design conformation-specific kinase inhibitors | Yes-Talk only | |
Avner Schlessinger |
3DSIG COSI |
| 85 | Structure-based drug repositioning uncovers a well-known cancer drug as B-cells inactivator | Yes-Talk and Poster | Melissa F. Adasme |
Melissa F. Adasme |
3DSIG COSI |
| 112 | Method to generate highly stable D-amino acid analogs of bioactive helical peptides using a mirror image of the entire PDB | Yes-Talk only | |
Philip Kim |
3DSIG COSI |
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| 115 | Deep deconvolution of HLA peptidomes improves epitope predictions and reveals novel properties of HLA molecules | No | |
|
3DSIG COSI |
| 141 | Rational Design of Protein Dynamics | Yes-Poster only | Joan Planas-Iglesias |
|
3DSIG COSI |
| 144 | MOLECULAR MODELING AND PHARMACOPHORE-BASED VIRTUAL SCREENING TARGETING NEW INHIBITORS FOR LEISHMANIA BRASILIENSIS CRUZAINE | Yes-Poster only | Tarcisio Melo |
|
3DSIG COSI |
| 149 | Acceptable (ϕ,ψ) outliers and position-dependent steric maps derived using bond parameter specific Ramachandran analysis | Yes-Poster only | Ashraya Ravikumar |
|
3DSIG COSI |
| 150 | VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes | Yes-Poster only | Kliment Olechnovic |
|
3DSIG COSI |
| 157 | An Integrated Molecular Modeling and Dynamic Residue Network Analysis Strategy to Identify Allosteric Modulators of Human Heat Shock Proteins | Yes-Talk and Poster | Arnold Amusengeri |
Arnold Amusengeri |
3DSIG COSI |
| 158 | Identification of Novel Allosteric Modulators using in silico Approaches: A Case Study for Plasmodium falciparum Prolyl tRNA Synthetase | Yes-Poster only | Dorothy Nyamai |
|
3DSIG COSI |
| 175 | Reliable charge parameterization of metal cofactors for the Plasmodium falciparum cytochrome b and iron-sulfur protein complex for inhibitory drug design | Yes-Poster only | Lorna Chebon-Bore |
|
3DSIG COSI |
| 208 | Effective all-atom reconstruction algorithm for NARES-2P coarse-grained model of nucleic acids | Yes-Poster only | Łukasz Golon |
|
3DSIG COSI |
| 213 | A mutation Y823D in KIT shifts dynamic equilibrium between the kinase active and inactive states thus conferring resistance to anti-cancer drugs | Yes-Poster only | Sanjay Kumar Srikakulam |
|
3DSIG COSI |
| 215 | DEEPCON: Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout | Yes-Talk and Poster | Badri Adhikari |
Badri Adhikari |
3DSIG COSI |
| 218 | How effectively can one assess the structural impact of a missense variant in both experimental and predicted protein structures? | Yes-Poster only | Michael Sternberg |
|
3DSIG COSI |
| 240 | FireProtASR: an Automated Workflow for Ancestral Sequence Reconstruction | Yes-Poster only | Milos Musil |
|
3DSIG COSI |
| 242 | “Old Drugs, New Tricks”: Learning from failure and success stories of drug discovery | Yes-Poster only | Sohini Chakraborti |
|
3DSIG COSI |
| 247 | Caver Web: Identification of Tunnels and Channels in Proteins and Analysis of Ligand Transport | Yes-Poster only | Jan Stourac |
|
3DSIG COSI |
| 250 | The characterization of Plasmodial GTP Cyclohydrolase I enzyme as a potential anti-malarial drug target using computational approaches | Yes-Poster only | Afrah Khairallah |
|
3DSIG COSI |
| 286 | Single domain Immunoglobulins - Complexity deconstruction | Yes-Poster only | Philippe Youkharibache |
|
3DSIG COSI |
| 302 | Progress on protein structure prediction by deep learning | Yes-Talk and Poster | Jinbo Xu |
Jinbo Xu |
3DSIG COSI |
| 317 | Study of protein unfolding for engineering stability | Yes-Poster only | Sergio M. Marques |
|
3DSIG COSI |
| 325 | Amino acid sequences of protein-protein interaction surfaces for unknown protein complex pairs | Yes-Poster only | Nobuyuki Uchikoga |
|
3DSIG COSI |
| 332 | Molecular Modelling and Active-site Channels of a Protein Associated with Homocystinuria in Qatar: Structural Basis for Developing New Therapies | Yes-Poster only | Navaneethakrishnan Krishnamoorthy |
|
3DSIG COSI |
| 361 | Structural variations in the 1998-2018 influenza B hemagglutinin receptor binding site coincide with viral evolution and infection: A computational study with antiviral applications | Yes-Poster only | Marni Cueno |
|
3DSIG COSI |
| 370 | Structural analysis of binding promiscuity for MHC class II alleles | Yes-Poster only | Rodrigo Ochoa |
|
3DSIG COSI |
| 389 | Structure Based Prediction of MHC II Binding Peptides | Yes-Poster only | Josef Laimer |
|
3DSIG COSI |
| 406 | PDBe-KB: Placing structural data in its biological context | Yes-Poster only | Mihaly Varadi |
|
3DSIG COSI |
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| 415 | What does evolutionary information tell us about chemokine receptor structure and function ? | No | |
|
3DSIG COSI |
| 427 | Improving Scoring Functions for Protein-Ligand Binding Affinity Using Small Molecule Descriptors | Yes-Talk and Poster | Fergus Boyles |
Fergus Boyles |
3DSIG COSI |
| 432 | Pyrimethamine compromised Plasmodium falciparum mutant dihydrofolate reductase (DHFR) proteins reveal residue network differences underlying drug resistance in the parasite | Yes-Poster only | Rolland Bantar Tata |
|
3DSIG COSI |
| 451 | Homology modelling and molecular docking of Moniliophtora perniciosa TOR1 and prediction of its interaction with Theobroma cacao | Yes-Poster only | Andria Freitas |
|
3DSIG COSI |
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| 454 | An automated pipeline for integrative structural modelling of molecular complexes | Yes-Talk only | |
Jan Kosinski |
3DSIG COSI |
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| 455 | Pharmacophore-based virtual screening and molecular docking study for searching new inhibitors for Prostaglandin E2 receptor 4 (EP4) | Yes-Poster only | Bruno Andrade |
|
3DSIG COSI |
| 463 | Fast protein assembly search and alignment with complete 3D Zernike moment invariants | Yes-Poster only | Dmytro Guzenko |
|
3DSIG COSI |
| 473 | Analysis of amino acid structures from amyloid-like end segments in PDB entries | Yes-Poster only | Kristóf Takács |
|
3DSIG COSI |
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| 475 | End-to-end differentiable learning of protein structure | No | |
|
3DSIG COSI |
| 478 | Mutational patterns of the HIV-1 integrase in isolates of Raltegravir-treated and drug-naïve patients: structure, variability and mutation co-occurrence | Yes-Poster only | Lucas Machado |
|
3DSIG COSI |
| 536 | Novel Potential Antimalarials through Drug Repurposing and Multitargeting: A Computational Approach | Yes-Poster only | Bakary Ntji Diallo |
|
3DSIG COSI |
| 556 | Resources for repeat protein structure annotation: RepeatsDB and RepeatsDB-Lite | Yes-Poster only | Lisanna Paladin |
|
3DSIG COSI |
| 564 | MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. | Yes-Poster only | Silvio Tosatto |
|
3DSIG COSI |
| 566 | Implementing InteractoMIX platform in Galaxy | Yes-Poster only | Patricia Mirela Bota |
|
3DSIG COSI |
| 578 | Bacterial origin of the 19-stranded outer membrane β-barrels specific to mitochondria | Yes-Poster only | Joana Pereira |
|
3DSIG COSI |
| 593 | Prediction of Critical Residues in Protein Structures using Amino Acid Networks | Yes-Poster only | Lenka Sumbalová |
|
3DSIG COSI |
| 596 | Matching biomolecular structures by registration of point clouds | Yes-Poster only | Nima Vakili |
|
3DSIG COSI |
| 615 | Flavors of linear interacting peptides derived from structural data in MobiDB | Yes-Poster only | Alexander Monzon |
|
3DSIG COSI |
| 630 | A supervised but interpretable coevolutionary predictor of protein-protein interactions | Yes-Poster only | Edoardo Sarti |
|
3DSIG COSI |
| 654 | Network analysis of synonymous codon usage | Yes-Poster only | Khalique Newaz |
|
3DSIG COSI |
| 659 | CONAN: Interactive contact network analysis and visualization of ensembles of molecular structures | Yes-Poster only | Markus Schneider |
|
3DSIG COSI |
| 660 | In silico structural characterization and molecular docking for human TAS2R16 receptor | Yes-Poster only | Catiane Souza |
|
3DSIG COSI |
| 675 | Probing the effect of mutations on the Interactome | Yes-Poster only | Fabrizio Pucci |
|
3DSIG COSI |
| 681 | Novel analysis and data visualization of molecular dynamics trajectories. | Yes-Poster only | Dibyajyoti Maity |
|
3DSIG COSI |
| 682 | Template-based modeling of protein complexes using the PPI3D web server | Yes-Poster only | Justas Dapkūnas |
|
3DSIG COSI |
| 683 | Long range interactions of Human Papillomavirus with human genes can cause alteration in gene expression levels of oncogenes in cervical cancer. | Yes-Poster only | Mahua Bhattacharya |
|
3DSIG COSI |
| 700 | Deciphering interaction fingerprints from protein molecular surfaces | Yes-Talk and Poster | Pablo Gainza |
Pablo Gainza |
3DSIG COSI |
| 703 | A Global Structural Protein Interaction Network with Genomic and Phenomic Annotations | Yes-Poster only | Janez Konc |
|
3DSIG COSI |
| 717 | SOLart: a structure-based method to predict protein solubility and aggregation | Yes-Poster only | Qingzhen Hou |
|
3DSIG COSI |
| 735 | Structural analysis of AMPK and its mutants and phosphorylation sites in breast cancer | Yes-Poster only | Sachendra Kumar |
|
3DSIG COSI |
| 748 | Exploring DOT assisted interactions in protein-RNA complexes | Yes-Poster only | Ambuj Srivastava |
|
3DSIG COSI |
| 750 | Conformational space derived from normal mode analysis: a dynamical metric for scoring 3D predictions of RNA, proteins and their complexes | Yes-Poster only | Olivier Mailhot |
|
3DSIG COSI |
| 769 | The interaction propensity of protein surfaces is shaped by functional but also non-functional partners | Yes-Talk and Poster | Anne Lopes |
Anne Lopes |
3DSIG COSI |
| 772 | DMPfold: fast de novo protein modelling using iterative deep learning-based prediction of structural constraints | Yes-Talk and Poster | Shaun Kandathil |
Joe Greener |
3DSIG COSI |
| 779 | Supporting Structure Prediction Method Development with Continuous Automated Model EvaluatiOn (CAMEO) | Yes-Talk and Poster | Juergen Haas |
Juergen Haas |
3DSIG COSI |
| 781 | e-Infrastructure for the Multi-Scale Complex Genomics Virtual Research Environment | Yes-Poster only | Josep Ll Gelpí |
|
3DSIG COSI |
| 784 | Deep generative models for 3D compound design from fragment screens | Yes-Talk and Poster | Fergus Imrie |
Fergus Imrie |
3DSIG COSI |
| 788 | RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold | Yes-Talk and Poster | Clare E. West |
Clare E. West |
3DSIG COSI |
| 805 | The landscape of atypical and eukaryotic protein kinases | Yes-Talk and Poster | Georgi Kanev |
Georgi Kanev |
3DSIG COSI |
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| 806 | Determining protein structures using deep mutational scanning | Yes-Talk only | |
Jörn Schmiedel |
3DSIG COSI |
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| 811 | 3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients | Yes-Poster only | Cansu Dincer |
|
3DSIG COSI |
| 812 | DeePpiS – towards Deep Learning for Predicting Protein-Protein Interface Positions from Sequence | Yes-Poster only | K. Anton Feenstra |
|
3DSIG COSI |
| 815 | TAM FAMILY PROTEIN AXL’s LIGAND SELECTIVITY IS REGULATED BY THREE CHARGED AMINO ACIDS | Yes-Poster only | Ezgi Karaca |
|
3DSIG COSI |
| 840 | Structure-based Prediction of Terpene Synthase Product Specificity | Yes-Poster only | Janani Durairaj |
|
3DSIG COSI |
| 842 | TopoBuilder: Expanding and Functionalizing the Protein Fold Space | Yes-Talk and Poster | Jaume Bonet |
Jaume Bonet |
3DSIG COSI |
| 878 | Modeling TCR-p-MHC complexes relevant for T-cell therapy development | Yes-Poster only | Lukas Wietbrock |
|
3DSIG COSI |
| 888 | ResiRole: Residue-Level Functional Site Predictions to Gauge the Average Accuracies of Protein Structure Prediction Techniques | Yes-Talk and Poster | Joshua Toth |
William McLaughlin |
3DSIG COSI |
| 896 | Model Archive – a deposition system for persistent archiving of theoretical protein structure models | Yes-Poster only | Andrew Waterhouse |
|
3DSIG COSI |
| 897 | De novo protein design of potent hematopoietic agents | Yes-Talk and Poster | Mohammad Elgamacy |
Mohammad Elgamacy |
3DSIG COSI |
| 910 | Symmetry in Protein Complexes | Yes-Poster only | Sergei Grudinin |
|
3DSIG COSI |
| 914 | SWISS-MODEL – automated structure prediction of protein complexes in a web-based system | Yes-Poster only | Gerardo Tauriello |
|
3DSIG COSI |
| 944 | QMEANDisCo – Distance Constraints Applied on the Local Model Quality Estimation Problem | Yes-Poster only | Gabriel Studer |
|
3DSIG COSI |
| 960 | Structural signatures: a robust descriptor of cellular gene expression change. | Yes-Poster only | Rayees Rahman |
|
3DSIG COSI |
| 963 | JET2DNA: a new tool for the accurate prediction of DNA-binding sites and identification of their properties. | Yes-Poster only | Flavia Corsi |
|
3DSIG COSI |
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| 965 | Detection of Conformational States and Allosteric Hub Residues in Molecular Simulations | Yes-Talk only | |
Franca Fraternali |
3DSIG COSI |
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| 967 | The evolution of contact prediction: evidence for non-random selection of contacts in statistical protein contact prediction | Yes-Poster only | Mark Chonofsky |
|
3DSIG COSI |
| 980 | Scalable, Interactive, and Reproducible Data Mining of 3D Macromolecular Structures | Yes-Poster only | Peter Rose |
|
3DSIG COSI |
| 989 | The Impact of Conformational Entropy on the Accuracy of the Molecular Docking Software FlexAID in Binding Mode Prediction (III). | Yes-Talk and Poster | Louis-Philippe Morency |
Louis-Philippe Morency |
3DSIG COSI |
| 1005 | Evolution of domain structure within repetitive proteins | Yes-Poster only | Aleix Lafita |
|
3DSIG COSI |
| 1032 | A molecular docking and ADMET study of a promising compound of the Brazilian semi arid with inhibitory potencial of IKK-B | Yes-Poster only | Wagner Rodrigues De Assis Soares |
|
3DSIG COSI |
| 1047 | A New Antibody CDR Structural Database | Yes-Talk and Poster | Simon Kelow |
Simon Kelow |
3DSIG COSI |
| 1048 | Improving the prediction of loops and drug binding in GPCR structure models | Yes-Poster only | Bhumika Arora |
|
3DSIG COSI |
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| 1070 | Protein function-specific structural insights into the effect of missense variants in 1,330 disease-associated genes. | No | |
|
3DSIG COSI |
| 1097 | interfacea: open-source library for protein interface analysis | Yes-Poster only | João Rodrigues |
|
3DSIG COSI |
| 1100 | Bayesian active learning for optimization and uncertainty quantification in protein docking | Yes-Talk and Poster | Yang Shen |
Yang Shen |
3DSIG COSI |
| 1131 | The antibody-antigen interaction: a new approach for epitope prediction | Yes-Poster only | Anna Vangone |
|
3DSIG COSI |
| 1140 | Validation of NMR protein structures using structural rigidity theory and random coil index | Yes-Poster only | Nicholas Fowler |
|
3DSIG COSI |
| 1154 | iCn3D, a Web-based 3D Viewer for Sharing 1D/2D/3D Representations of Biomolecular Structures | Yes-Poster only | Philippe Youkharibache |
|
3DSIG COSI |
| 1157 | GGIP: Structure and sequence-based GPCR–GPCR interaction pair predictor | Yes-Poster only | Sakie Shimamura |
|
3DSIG COSI |
| 1223 | PISITE update: protein sociability and interactions in the genomic era | Yes-Poster only | Hafumi Nishi |
|
3DSIG COSI |
| 1270 | Mapping Structure and Interaction in Beta Turns | Yes-Poster only | Nicholas Newell |
|
3DSIG COSI |
| 1282 | GalaxyDomDock: Protein Domain Structure Assembly by Docking | Yes-Poster only | Taeyong Park |
|
3DSIG COSI |
| 1285 | GalaxyDock3: A protein-ligand docking program that considers full structural flexibility of ligand | Yes-Poster only | Jinsol Yang |
|
3DSIG COSI |
| 1289 | Surface-centric Computational Protein Design | Yes-Poster only | Andreas Scheck |
|
3DSIG COSI |
| 1303 | Analysis on nonsynonymous variations with possible structural and functional impact on loss-of-function intolerant proteins | Yes-Poster only | Matsuyuki Shirota |
|
3DSIG COSI |
| 1333 | Structuromic analysis of protein mutational robustness selection at the codon level | Yes-Poster only | Martin Schwersensky |
|
3DSIG COSI |
| 1334 | Pharmacophore Modelling of Serine Proteases for Studying Binding mechanisms and Inhibitor Discovery. | Yes-Poster only | Nikhil Pathak |
|
3DSIG COSI |
| 1335 | Evaluation of differences in protein dynamics caused by genomic variant using time-series data | Yes-Poster only | Mayumi Kamada |
|
3DSIG COSI |
| 1336 | Describing the dynamics behind extension/retraction of Enterohemorrhagic Escherichia coli Type 4 Pilus | Yes-Poster only | Yasaman Karami |
|
3DSIG COSI |
| 1374 | Co-evolution Analysis for Allosteric Network Prediction | Yes-Poster only | Dominik Schwarz |
|
3DSIG COSI |
| 1388 | Structure-Informed Variant Prioritization in Personalized Oncology | Yes-Poster only | Siao-Han Wong |
|
3DSIG COSI |
| 187 | Knowledge graph representation learning: approaches and applications to bio-medicine | Yes-Talk and Poster | Mona Alshahrani |
Mona Alshahrani |
Bio-Ontologies COSI |
| 200 | Rhea, an expert curated resource of biochemical reactions with SPARQL endpoint | Yes-Poster only | Thierry Lombardot |
|
Bio-Ontologies COSI |
| 435 | Combining knowledge-based approach with logic data mining techniques to improve data querying and analysis on Alzheimer's Disease data | Yes-Talk and Poster | Francesco Taglino |
Francesco Taglino |
Bio-Ontologies COSI |
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| 465 | Ontology-Driven Omics Data Visualization and Database Update Notifications | Yes-Talk only | |
Peter Karp |
Bio-Ontologies COSI |
| 528 | Mapping UK Biobank to the Experimental Factor Ontology. | Yes-Talk only | |
Zoë May Pendlington |
Bio-Ontologies COSI |
| 546 | Semantic persistence of ambiguous biomedical names in the citation network | Yes-Talk only | |
Raul Rodriguez-Esteban |
Bio-Ontologies COSI |
| 641 | SIENA: Semi-automatic Semantic Enhancement of Datasets using Concept Recognition | Yes-Talk and Poster | Andreea Grigoriu |
Andreea Grigoriu |
Bio-Ontologies COSI |
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| 642 | Introducing ontology-based generalization to simplify complex network visualization | Yes-Poster only | Marie-Dominique Devignes |
|
Bio-Ontologies COSI |
| 719 | Standardising intrinsic disorder description | Yes-Talk and Poster | András Hatos |
András Hatos |
Bio-Ontologies COSI |
| 722 | CROssBAR: Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning | Yes-Talk and Poster | Ahmet Sureyya Rifaioglu |
Tunca Dogan |
Bio-Ontologies COSI |
| 783 | Development and implementation of the Sickle Cell Disease ontology | Yes-Talk and Poster | Ambroise Wonkam |
Ambroise Wonkam |
Bio-Ontologies COSI |
| 881 | Proposing a unified framework of topological factors in order to refine semantic network analysis on biomedical ontologies | Yes-Talk and Poster | Thodoris Koutsandreas |
Thodoris Koutsandreas |
Bio-Ontologies COSI |
| 1098 | Extending Machine Learning Capabilities of BioAssay Express | Yes-Talk and Poster | Peter Gedeck |
Hande Kucuk McGinty |
Bio-Ontologies COSI |
| 1102 | OntoloBridge – A FAIR Semi-Automated Ontology Update Request System | Yes-Poster only | Hande Küçük McGinty |
|
Bio-Ontologies COSI |
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| 1114 | Managing ontology releases with the Ontology Development Kit | Yes-Talk only | |
Chris Mungall |
Bio-Ontologies COSI |
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| 1351 | Reusable Semantic APIs for the TogoGenome integrated genome database developed with the SPARQList | Yes-Poster only | Toshiaki Katayama |
|
Bio-Ontologies COSI |
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| 129 | Explore, analyze and publish genomic data with Integrated Genome Browser | No | |
|
BioVis COSI |
| 186 | Addressing Scientific Reproducibility with Data Sharing Platforms: INTERVALS, a case study | Yes-Poster only | Sylvain Gubian |
|
BioVis COSI |
| 197 | Advanced Visualization of Data Comparisons with BiocompR | Yes-Poster only | Yoann Pageaud |
|
BioVis COSI |
| 224 | BioCicle: A Tool for Summarizing and Comparing Taxonomic Profiles out of Biological Sequence Alignments | Yes-Talk and Poster | Meili Vanegas-Hernandez |
Meili Vanegas-Hernandez |
BioVis COSI |
| 276 | GeneDMRs: an R package for Gene-based Differentially Methylated Regions analysis | Yes-Talk and Poster | Xiao Wang |
Xiao Wang |
BioVis COSI |
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| 295 | Epilogos: information-theoretic navigation of multi-tissue functional genomic annotations | Yes-Talk only | |
Wouter Meuleman |
BioVis COSI |
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| 384 | A network-based approach for visualization and simplification of single-cell RNA sequencing data | Yes-Poster only | Mariia O. Bilous |
|
BioVis COSI |
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| 531 | Towards commodity immersive molecular modeling in web browsers, for education and research | No | |
|
BioVis COSI |
| 608 | GenesetPCA for multi-variate model interpretation | Yes-Poster only | Rachel Cavill |
|
BioVis COSI |
| 625 | Nightingale: A library of re-usable data visualisation components | Yes-Poster only | Daniel Rice |
|
BioVis COSI |
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| 724 | Fast and curious: Efficient exploratory visualization of cross-domain interaction networks | Yes-Talk only | |
Mehmet Gönen |
BioVis COSI |
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| 766 | PubScore: quantifying and visualizing the literature relevance of a gene set about any topic | No | |
|
BioVis COSI |
| 808 | Evidente – A visual analytics tool for data enrichment in SNP-based phylogenetic trees | Yes-Talk and Poster | Mathias Witte Paz |
Mathias Witte Paz |
BioVis COSI |
| 814 | Cliques of single-cell RNA-seq profiles reveal insights into cell ecology during development and differentiation | Yes-Poster only | Baihan Lin |
|
BioVis COSI |
| 853 | Cellxgene: enabling performant, interactive exploration of single-cell transcriptomics data | Yes-Poster only | Sidney Bell |
|
BioVis COSI |
| 860 | iBioProVis: Interactive Visualization and Analysis of Compound Bioactivity Space | Yes-Talk and Poster | Ahmet Sureyya Rifaioglu |
Ahmet Sureyya Rifaioglu |
BioVis COSI |
| 887 | The gene Expression and Analysis Resource (gEAR) Portal | Yes-Talk and Poster | Joshua Orvis |
Joshua Orvis |
BioVis COSI |
| 903 | Interoperable web-based data visualisation components for the future: Working towards BioJS 3.0 | Yes-Poster only | Yochannah Yehudi |
|
BioVis COSI |
| 945 | ImmuneRegulation: A web based tool for identifying human immune regulatory elements | Yes-Talk and Poster | Zeynep H. Gümüş |
Zeynep H. Gümüş |
BioVis COSI |
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| 987 | Combining programmatic visualization and interactive exploration of large phylogenetic trees using ETE toolkit | Yes-Talk only | |
Jaime Huerta-Cepas |
BioVis COSI |
| 1019 | Proactive Visual and Statistical Analysis of Genomic Data in Epiviz | Yes-Talk and Poster | Jayaram Kancherla |
Jayaram Kancherla |
BioVis COSI |
| 1030 | Flud: a hybrid crowd-algorithm approach for visualizing biological networks | Yes-Talk and Poster | Aditya Bharadwaj |
Aditya Bharadwaj |
BioVis COSI |
| 1088 | Density-Preserving Visualization of Single Cells | Yes-Talk and Poster | Ashwin Narayan |
Ashwin Narayan |
BioVis COSI |
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| 1151 | Visualising Variant Data on 3D Structure Using Jalview | Yes-Poster only | Mungo Carstairs |
|
BioVis COSI |
| 1201 | ExploSig: Hypothesis-driven Exploration of Mutation Signature Etiology | Yes-Poster only | Mark Leiserson |
|
BioVis COSI |
| 1224 | A CUSTOMIZED FORCE-DIRECTED LAYOUT ALGORITHM WITH GENETIC ALGORITHM TECHNIQUES FOR BIOLOGICAL GRAPHS | Yes-Poster only | Volkan Atalay |
|
BioVis COSI |
| 1234 | Enhancing gene set enrichment using networks | Yes-Poster only | Michael Prummer |
|
BioVis COSI |
| 1292 | Advances in Neuronal Morphology Analysis, Meshing and Visualization with NeuroMorphoVis | Yes-Poster only | Marwan Abdellah |
|
BioVis COSI |
| 1317 | Developing web tools for mass cytometry data analysis | Yes-Poster only | Gabor Beke |
|
BioVis COSI |
| 1350 | The nd_scatter widget in Jupyter and other web contexts | Yes-Poster only | Aaron Watters |
|
BioVis COSI |
| 1395 | GO Cluster Finder: Visualization tool to identify gene clusters that are composed of functionally related genes | Yes-Poster only | Mingeun Ji |
|
BioVis COSI |
| 1404 | Vitessce - Building a Modular Tool for Single-Cell Spatial Omics and Image Visualization | Yes-Poster only | Nils Gehlenborg |
|
BioVis COSI |
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| 7 | nf-core: Community built bioinformatics pipelines | Yes-Talk only | |
Alexander Peltzer |
BOSC COSI |
| 52 | pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive | Yes-Talk and Poster | Saket Choudhary |
Saket Choudhary |
BOSC COSI |
| 82 | snakePipes enable flexible, scalable and integrative epigenomic analysis | Yes-Talk and Poster | Devon Ryan |
Devon Ryan |
BOSC COSI |
| 160 | elPrep 4: A multi-threaded tool for sequence analysis | Yes-Talk only | |
Charlotte Herzeel |
BOSC COSI |
| 239 | The FAIR data principles and their practical implementation in InterMine | Yes-Talk and Poster | Sergio Contrino |
Sergio Contrino |
BOSC COSI |
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| 261 | Machado: a python framework to store, search and visualize biological data | No | |
|
BOSC COSI |
| 309 | Collecting runtime metrics of genome analysis workflows by CWL-metrics | Yes-Talk and Poster | Tazro Ohta |
Tazro Ohta |
BOSC COSI |
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| 318 | Bioconductor with Containers: Past, Present, and Future | Yes-Talk only | |
Nitesh Turaga |
BOSC COSI |
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| 340 | A composable rootless container system for genomic analysis pipelines | No | |
|
BOSC COSI |
| 345 | GA4GH: Developing Open Standards for Responsible Data Sharing | Yes-Talk and Poster | Rishi Nag |
Rishi Nag |
BOSC COSI |
| 362 | Creating a pluggable visualisation toolsuite with BlueGenes Tool API | Yes-Poster only | Yo Yehudi |
|
BOSC COSI |
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| 365 | Expanding from Open-Source Bioinformatics Software to Open-Source Data Indexing in NCBI-Hackathons | No | |
|
BOSC COSI |
| 366 | ELIXIR Europe on the Road to Sustainable Research Software | Yes-Talk and Poster | Mateusz Kuzak |
Mateusz Kuzak |
BOSC COSI |
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| 398 | The (Re)usable Data Project | Yes-Talk only | |
Seth Carbon |
BOSC COSI |
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| 409 | Cellular Genetics Informatics support group: Nextflow and Jupyter on Kubernetes, Nextflow web interface | Yes-Poster only | Anton Khodak |
|
BOSC COSI |
| 417 | A method for systematically generating explorable visualization design spaces | Yes-Talk and Poster | Anamaria Crisan |
Anamaria Crisan |
BOSC COSI |
| 419 | Biotite: A comprehensive and efficient computational molecular biology library in Python | Yes-Talk and Poster | Patrick Kunzmann |
Patrick Kunzmann |
BOSC COSI |
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| 421 | Benten: An experimental language server for the Common Workflow Language | Yes-Talk only | |
Kaushik Ghose |
BOSC COSI |
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| 426 | OpenBio-C: An Online Social Workflow Management System and Research Object Repository | Yes-Poster only | Alexandros Kanterakis |
|
BOSC COSI |
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| 441 | Portable Pipeline for Whole Exome and Genome Sequencing | Yes-Talk only | |
Andrey Kokorev |
BOSC COSI |
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| 445 | CWLab: an open-source, platform-agnostic, and cloud-ready framework for simplified deployment of the Common Workflow Language using a graphical web interface | Yes-Poster only | |
|
BOSC COSI |
| 477 | pdb-tools: a dependency-free cross-platform swiss army knife for PDB files. | Yes-Poster only | João Rodrigues |
|
BOSC COSI |
| 502 | NGLess: a domain-specific language for NGS analysis (the NG-meta-profiler case study) | Yes-Talk and Poster | Luis Pedro Coelho |
Luis Pedro Coelho |
BOSC COSI |
| 507 | OmicsSIMLA: A multi-omics data simulation tool for complex disease studies | Yes-Poster only | Ren-Hua Chung |
|
BOSC COSI |
| 518 | Forome Anfisa – an Open Source Variant Interpretation Tool | Yes-Talk and Poster | Dmitry Etin |
Michael Bouzinier |
BOSC COSI |
| 542 | Tagging of disease names in biomedical literature | Yes-Poster only | Jeanette Prinz |
|
BOSC COSI |
| 553 | WhatsHap: fast and accurate read-based phasing | Yes-Poster only | Peter Ebert |
|
BOSC COSI |
| 558 | Recommendations and guidelines for tumor heterogeneity quantification using deconvolution of methylation data: data challenges as a tool for benchmarking studies | Yes-Poster only | Magali Richard |
|
BOSC COSI |
| 612 | Sustainability of legacy software - Making the antiSMASH genome mining tool ready for the future | Yes-Poster only | Kai Blin |
|
BOSC COSI |
| 616 | Methrix: An R package for efficient processing of bedGraph files from large-scale methylome cohorts | Yes-Poster only | Anand Mayakonda |
|
BOSC COSI |
| 656 | Janis: An open source tool to machine generate type-safe CWL and WDL workflows | Yes-Talk and Poster | Richard Lupat |
Richard Lupat |
BOSC COSI |
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| 705 | Inclusiveness in Open Science Communities | Yes-Talk only | |
Malvika Sharan |
BOSC COSI |
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| 706 | Run Scanner: a tool for monitoring sequencer runs and accessing run information | Yes-Poster only | Morgan Taschuk |
|
BOSC COSI |
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| 775 | Variant Transforms and BigQuery: Large scale data analytics in the cloud | Yes-Talk only | |
Andrew Moschetti |
BOSC COSI |
| 791 | A toolkit for semantic markup, exploration, comparison and merging of metadata models expressed as JSON-Schemas | Yes-Talk only | |
Dominique Batista |
BOSC COSI |
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| 830 | Ada Discovery Analytics: All-in-One Data Platform for Clinical and Translational Medicine with Scalable Machine Learning | Yes-Poster only | Peter Banda |
|
BOSC COSI |
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| 862 | BioLink Model - standardizing knowledge graphs and making them interoperable | Yes-Talk only | |
Deepak Unni |
BOSC COSI |
| 864 | Fake it 'til You Make It: Open Source Tool for Synthetic Data Generation to Support Reproducible Genomic Analyses | Yes-Talk and Poster | Adelaide Rhodes |
Adelaide Rhodes |
BOSC COSI |
| 886 | OpenEBench. The ELIXIR platform for benchmarking. | Yes-Talk and Poster | Salvador Capella-Gutiérrez |
Salvador Capella-Gutiérrez |
BOSC COSI |
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| 918 | Scalable Genome Annotation with Apollo | No | |
|
BOSC COSI |
| 962 | The Kipoi repository: accelerating the community exchange and reuse of predictive models for genomics | Yes-Talk and Poster | Ziga Avsec |
Julien Gagneur |
BOSC COSI |
| 977 | CViTjs: Dynamic Whole Genome Visualisation | Yes-Poster only | Andrew Wilkey |
|
BOSC COSI |
| 986 | Dockstore: Enhancing a community platform for sharing cloud-agnostic research tools | Yes-Talk and Poster | Denis Yuen |
Louise Cabansay |
BOSC COSI |
| 996 | Disq, a library for manipulating bioinformatics sequencing formats in Apache Spark. | Yes-Talk and Poster | Michael Heuer |
Michael Heuer |
BOSC COSI |
| 1013 | The Data Carpentry Genomics Curriculum: Overview and Impact | Yes-Talk and Poster | François Michonneau |
François Michonneau |
BOSC COSI |
| 1015 | Epiviz File Server - Query, Compute and Interactive Exploration of data from Indexed Genomic Files | Yes-Talk and Poster | Jayaram Kancherla |
Jayaram Kancherla |
BOSC COSI |
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| 1055 | The Commons Alliance: Building cloud-based infrastructure to support biomedical research in Data STAGE and AnVIL | Yes-Talk only | |
Brian O'Connor |
BOSC COSI |
| 1075 | A lightweight approach to research object data packaging | Yes-Talk and Poster | Stian Soiland-Reyes |
Stian Soiland-Reyes |
BOSC COSI |
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| 1103 | Developing Python and Rust libraries to improve the ontology ecosystem | Yes-Poster only | Martin Larralde |
|
BOSC COSI |
| 1113 | ECRcentral: An open-source platform to bring early-career researchers and funding opportunities together | Yes-Talk and Poster | Aziz Khan |
Aziz Khan |
BOSC COSI |
| 1239 | Impact of The African Genomic Medicine Training Initiative: a Community-Driven Genomic Medicine Competency-Based Training Model for Nurses in Africa | Yes-Talk and Poster | Victoria Nembaware |
Victoria Nembaware |
BOSC COSI |
| 1245 | Parallel, Scalable Single-cell Data Analysis | Yes-Talk and Poster | Ryan Williams |
Ryan Williams |
BOSC COSI |
| 1311 | Another point of view for the fast and accurate large MSA, the regressive approach | Yes-Poster only | Edgar Garriga Nogales |
|
BOSC COSI |
| 1316 | Analyzing protein structure and evolution using Julia with MIToS.jl | Yes-Poster only | Diego Zea |
|
BOSC COSI |
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| 1332 | Biopython Project Update 2019 | Yes-Talk only | |
Peter Cock |
BOSC COSI |
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| 1339 | ImmPort: Ensuring FAIR Data through a Trustworthy Biomedical Data Repository | Yes-Poster only | Dawei Lin |
|
BOSC COSI |
| 1343 | Pedigree-based analysis pipeline version 2 (PBAP v.2): new features added | Yes-Poster only | Alejandro Nato |
|
BOSC COSI |
| 1345 | RAWG: RNA-Seq Analysis Workflow Generator | Yes-Talk and Poster | Zeyu Yang |
Zeyu Yang |
BOSC COSI |
| 1346 | Crowdsourcing towards Antimicrobial Resistance & Open Source Drug Discovery | Yes-Poster only | Anshu Bhardwaj |
|
BOSC COSI |
| 1357 | What does 1.0 take? MISO LIMS after 9 years of development | Yes-Talk and Poster | Morgan Taschuk |
Morgan Taschuk |
BOSC COSI |
| 1359 | 10 recommendations to make your research software FAIRer | Yes-Poster only | Carlos Martinez Ortiz |
|
BOSC COSI |
| 1375 | SAPPORO: workflow management system that supports continuous testing of workflows | Yes-Talk and Poster | Hirotaka Suetake |
Hirotaka Suetake |
BOSC COSI |
| 1377 | Lazy representation and analysis of very large genomic data resources in R / Bioconductor | Yes-Talk and Poster | Qian Liu |
Qian Liu |
BOSC COSI |
| 1378 | Terra Open Science Contest | Yes-Poster only | Geraldine Van der Auwera |
|
BOSC COSI |
| 1379 | Sequenceserver: a modern graphical user interface for custom BLAST databases | Yes-Talk and Poster | Anurag Priyam |
Anurag Priyam |
BOSC COSI |
| 1380 | EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2019 update) | Yes-Poster only | Hervé Ménager |
|
BOSC COSI |
| 1385 | Physlr: Construct a Physical Map from Linked Reads | Yes-Poster only | Shaun Jackman |
|
BOSC COSI |
| 1397 | Archaeopteryx.js: Web-based Visualization and Exploration of Annotated Phylogenetic Trees (JavaScript) | Yes-Talk and Poster | Christian Zmasek |
Christian Zmasek |
BOSC COSI |
| 1399 | The Monarch Initiative: Closing the knowledge gap with semantics-based tools | Yes-Talk and Poster | Monica C Munoz-Torres |
Monica C Munoz-Torres |
BOSC COSI |
| 1400 | DAISY: a tool for the accountability of Biomedical Research Data under the GDPR. | Yes-Talk and Poster | Venkata Pardhasaradhi Satagopam |
Venkata Pardhasaradhi Satagopam |
BOSC COSI |
| 1406 | java2script/SwingJS for bioinformatics: Reintroducing Jalview on the Web as JalviewJS | Yes-Poster only | Robert Hanson |
|
BOSC COSI |
| 425 | An automatic machine learning tool for prediction of immune-evasion mechanisms in cancer samples | Yes-Poster only | Andreia Rogerio |
|
CAMDA COSI |
| 461 | Benchmarking scRNA-seq clustering methods using multi-parameter ensembles of simulated data and workflows | Yes-Talk and Poster | Xianing Zheng |
Xianing Zheng |
CAMDA COSI |
| 481 | Evaluation of Connectivity Map shows limited reproducibility in drug repositioning | Yes-Talk and Poster | Nathaniel Lim |
Nathaniel Lim |
CAMDA COSI |
| 1150 | A Novel Gene Selection Method for Gene Expression Data for the Task of Cancer Type Classification | Yes-Talk and Poster | Nuriye Özlem Özcan Şimşek |
Nuriye Özlem Özcan Şimşek |
CAMDA COSI |
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| 1165 | Analyzing cancer through Hipathia: a new insight on cancer signaling pathways | Yes-Talk only | |
Marta R. Hidalgo |
CAMDA COSI |
| 1168 | Comparison between functional profiles derived from whole genome sequencing and inferred from 16S sequencing. | Yes-Talk only | |
Carlos Loucera |
CAMDA COSI |
| 1169 | Systematic evaluation of microbial abundance from amplicon and shotgun sequencing for machine learning prediction of sample origin | Yes-Talk and Poster | Julie Chih-Yu Chen |
Julie Chih-Yu Chen |
CAMDA COSI |
| 1171 | CAMDA Forensics Challenge: An Evaluation of Mass-Transit, Microbiome Profiles | Yes-Talk only | |
Scott Lewis |
CAMDA COSI |
| 1173 | A Machine Learning Framework to Determine Geolocations from Metagenomics Profiling | Yes-Talk and Poster | Lihong Huang |
Lihong Huang |
CAMDA COSI |
| 1174 | Steps towards predictive models for DILI based on chemical structure and gene expression signatures and their interpretation | Yes-Talk and Poster | Peter Wright |
Anika Liu |
CAMDA COSI |
| 1175 | Integration of human cell lines gene expression and chemical properties of drugs for Drug Induced Liver Injury prediction | Yes-Talk and Poster | Witold R. Rudnicki |
Witold R. Rudnicki |
CAMDA COSI |
| 1176 | Constructing microbial fingerprint for unraveling city-specific signature and identifying sample origin locations | Yes-Talk and Poster | Susmita Datta |
Susmita Datta |
CAMDA COSI |
| 1177 | An ensemble learning approach for modeling the systems biology of drug-induced injury in human liver | Yes-Talk and Poster | Joaquim Aguirre-Plans |
Joaquim Aguirre-Plans |
CAMDA COSI |
| 1178 | Metagenomic sequence classification to search for the origin of samples | Yes-Talk only | |
Jolanta Kawulok |
CAMDA COSI |
| 1182 | mi-faser based partition of the CAMDA 2019 mystery samples in the Metagenomic Forensics Challenge | Yes-Talk and Poster | Yannick Mahlich |
Maximilian Miller |
CAMDA COSI |
| 1193 | A systematic analysis of multiple cancer studies within a novel enhanced framework for semantic data integration | Yes-Talk and Poster | Maciej Kańduła |
Maciej Kańduła |
CAMDA COSI |
| 1198 | A sparse Bayesian factor model for the construction of gene co-expression networks from single-cell RNA sequencing count data | Yes-Talk only | |
Susmita Datta |
CAMDA COSI |
| 1249 | Prediction of human clinical drug-induced liver injury: cell-line responses versus chemical structures | Yes-Talk only | |
Thin Nguyen |
CAMDA COSI |
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| 1356 | maTE Detection of MicroRNAs Potentially Responsible for Differential Gene Expression Correlates Well with Differential MicroRNA Expression | Yes-Poster only | Malik Yousef |
|
CAMDA COSI |
| 71 | From unstructured scientific peer-reviewed literature to novel biomarkers of ageing. | Yes-Poster only | Matiss Ozols |
|
CompMS COSI |
| 103 | Target-small decoy search strategy for false discovery rate estimation | Yes-Poster only | Hyunwoo Kim |
|
CompMS COSI |
| 108 | High-throughput isoelectric point prediction of proteins and peptides | Yes-Poster only | Lukasz Kozlowski |
|
CompMS COSI |
| 177 | massFlowR: a tool for LC-MS data processing and automated annotation | Yes-Poster only | Elzbieta Lauzikaite |
|
CompMS COSI |
| 257 | Proteomics & bioinformatics to evaluate the quality of transcriptome assembly and to measure the extent of animal intrapopulation variability | Yes-Talk and Poster | Yannick Cogne |
Yannick Cogne |
CompMS COSI |
| 274 | SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information | Yes-Talk and Poster | Markus Fleischauer |
Markus Fleischauer |
CompMS COSI |
| 278 | TX-MS: Targeted chemical cross-linking Mass Spectrometry can determine quaternary protein structures directly in complex samples | Yes-Poster only | Hamed Khakzad |
|
CompMS COSI |
| 513 | Peptide Identification Allowing Combinatorial Mutations in Early Onset Gastric Cancer Patient | Yes-Poster only | Seunghyuk Choi |
|
CompMS COSI |
| 581 | NPS: scoring and evaluating the statistical significance of peptidic natural product–spectrum matches | Yes-Poster only | Alexey Gurevich |
|
CompMS COSI |
| 636 | The new MetaboLights for easy submission and reusability | Yes-Poster only | Kenneth Haug |
|
CompMS COSI |
| 777 | Quantitative identification of uncontrolled sources of variance in LC-MS using EWPCA | Yes-Poster only | Pol Solà-Santos |
|
CompMS COSI |
| 793 | What is the correct control for the identification of RNA-binding proteins? | Yes-Poster only | Katrin Bohl |
|
CompMS COSI |
| 834 | Variation and Genetic Control of Protein Abundance in Human Tissues | Yes-Poster only | Hua Tang |
|
CompMS COSI |
| 870 | BALSAM - A web platform for breath analysis, visualization and metabolite discovery | Yes-Poster only | Philipp Weber |
|
CompMS COSI |
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| 893 | netome: a computational framework for metabolite profiling and omics network analysis | No | |
|
CompMS COSI |
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| 1271 | Detection of antimicrobial resistance using proteomics and the Comprehensive Antibiotic Resistance Database: a case study | Yes-Talk and Poster | |
|
CompMS COSI |
| 99 | Developing a framework to assess the quality and impact of bioinformatics training across ELIXIR | Yes-Poster only | Kim T Gurwitz |
|
Education COSI |
| 119 | Coping with increasing student numbers and decreasing resources in applied bioinformatics laboratory classes | Yes-Poster only | Bruno Gaeta |
|
Education COSI |
| 191 | Rolling out bioinformatics teaching resources for high-school teachers | Yes-Poster only | Michelle Brazas |
|
Education COSI |
| 221 | Towards a community-endorsed data steward description for life science research | Yes-Talk and Poster | Celia W.G. van Gelder |
Celia W.G. van Gelder |
Education COSI |
| 282 | 4273pi: Bringing practical bioinformatics to schools in Scotland | Yes-Poster only | Stevie A. Bain |
|
Education COSI |
| 294 | Instilling FAIR Principles with a Learning Platform for Mitochondria Biology in GeneWiki | Yes-Poster only | Anders Olav Garlid |
|
Education COSI |
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| 298 | Educating future informaticians for precision medicine | No | |
|
Education COSI |
| 329 | 10 recommendations to make your training materials FAIRer | Yes-Poster only | Leyla Jael García Castro |
|
Education COSI |
| 331 | Scaffolding undergraduate student learning with video instruction - a case study | Yes-Talk and Poster | David Martin |
David Martin |
Education COSI |
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| 420 | Crossing continents, experience of using video sharing services to deliver biological sequence analysis and visualisation training around the world | Yes-Talk only | |
Suzanne Duce |
Education COSI |
| 671 | FAIR Training in ELIXIR Europe | Yes-Talk and Poster | Mateusz Kuzak |
Mateusz Kuzak |
Education COSI |
| 712 | The Mastery Rubric for Bioinformatics: a tool to support curriculum design and evaluation | Yes-Talk and Poster | Jessica M. Lindvall |
Jessica M. Lindvall |
Education COSI |
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| 844 | Online training: is there anyone out there? | Yes-Poster only | Melissa Burke |
|
Education COSI |
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| 855 | Clinical Bioinformatics education to the masses: enabling change in healthcare | Yes-Talk only | |
Ang Davies |
Education COSI |
| 865 | Challenges and solutions to teach structural bioinformatics to biochemistry undergraduate students in short university modules | Yes-Talk and Poster | Ozlem Tastan Bishop |
Ozlem Tastan Bishop |
Education COSI |
| 875 | Meet-U : Educating through Research Immersion | Yes-Talk and Poster | Elodie Laine |
Elodie Laine |
Education COSI |
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| 972 | Inclusive and innovative approaches to delivering training at distance | Yes-Poster only | Sarah Morgan |
|
Education COSI |
| 979 | Assessing the impact of the EMBL-EBI training programme | Yes-Poster only | Sarah L Morgan |
|
Education COSI |
| 1389 | Experience of bioinformatics training in a biomedical institute | Yes-Poster only | Maria Doyle |
|
Education COSI |
| 12 | Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty | Yes-Poster only | Gabriel Moreno-Hagelsieb |
|
EvoCompGen COSI |
| 23 | CladeOScope: A web tool for multiscale analyses of genes co-evolution, spanning 1000 eukaryote genomes | Yes-Poster only | Dana Sherill-Rofe |
|
EvoCompGen COSI |
| 24 | The Morphometric and Genetic Similarities/Difference that Contribute to Facial Morphology among the Three Major Ethnic Groups in Nigeria | Yes-Poster only | Abiodun Olowo |
|
EvoCompGen COSI |
| 26 | Evolutionary Dynamics and Function of Hydra Transposons | Yes-Poster only | Wai Yee Wong |
|
EvoCompGen COSI |
| 28 | Mapping global and local coevolution across 600 species to identify novel homologous recombination repair genes | Yes-Talk and Poster | Dana Sherill-Rofe |
Yuval Tabach |
EvoCompGen COSI |
| 41 | The Ortholog Conjecture Revisited: the Value of Orthologs and Paralogs in Function Prediction | Yes-Talk and Poster | Moses Stamboulian |
Moses Stamboulian |
EvoCompGen COSI |
| 45 | SonicParanoid: fast, accurate and easy orthology inference | Yes-Talk and Poster | Salvatore Cosentino |
Salvatore Cosentino |
EvoCompGen COSI |
| 60 | Sampling uncertainty for virus phylogeography | Yes-Poster only | Graciela Gonzalez-Hernandez |
|
EvoCompGen COSI |
| 104 | Transcriptomic analysis of the developmental stages of tardigrades reveals piRNA and hormone regulation | Yes-Poster only | Yuki Yoshida |
|
EvoCompGen COSI |
| 109 | AmoCoala: Towards a more realistic model for cophylogeny reconstruction via an approximate Bayesian computation | Yes-Talk and Poster | Blerina Sinaimeri |
Blerina Sinaimeri |
EvoCompGen COSI |
| 231 | Relationship between numbers of interaction and synonymous substitution for proteins expressed in E.coli | Yes-Poster only | Serika Taga |
|
EvoCompGen COSI |
| 260 | Rearrangement Scenarios Guided by Chromatin Structure | Yes-Poster only | Pijus Simonaitis |
|
EvoCompGen COSI |
| 265 | IMAP: Chromosome-level genome assembler combining multiple de novo assemblies | Yes-Talk and Poster | Hoyong Lee |
Giltae Song |
EvoCompGen COSI |
| 269 | Annotation of pseudogenes and investigation of their evolutionary origin and formation mechanisms in trypanosomatids pathogenic to humans | Yes-Poster only | Mayla Abrahim |
|
EvoCompGen COSI |
| 270 | Spatial structure governs the mode of tumour evolution | Yes-Talk and Poster | Robert Noble |
Robert Noble |
EvoCompGen COSI |
| 281 | Efficient homolog identification and interactive web-based whole genome alignment | Yes-Poster only | Jorge Duitama |
|
EvoCompGen COSI |
| 283 | Reconstructing the phylogeny of Corynebacteriales while accounting for Horizontal Gene Transfer | Yes-Poster only | Nilson Da Rocha Coimbra |
|
EvoCompGen COSI |
| 297 | Profiling an endophytic fungal genomic population structure and its relationships with host variation, geographical origin and ploidy | Yes-Poster only | Ruy Jauregui |
|
EvoCompGen COSI |
| 299 | Exploring genomic diversity in a haploid population using colored de Bruijn graphs: A case study on human mitochondrial genomes | Yes-Poster only | Jindan Guo |
|
EvoCompGen COSI |
| 301 | Assessment of the evolution of RETT syndrome-related proteins disordered regions and the implications of their point mutations | Yes-Poster only | Muhamad Fahmi |
|
EvoCompGen COSI |
| 320 | Phylogenetic profile analysis of Rett syndrome-related proteins | Yes-Poster only | Gen Yasui |
|
EvoCompGen COSI |
| 335 | Identification and analysis of human unitary pseudogenes - a story of gene loss and phenotype diversification | Yes-Poster only | Cristina Sisu |
|
EvoCompGen COSI |
| 356 | Genome mining for metabolic gene clusters in yeasts | Yes-Poster only | Chris Pyatt |
|
EvoCompGen COSI |
| 391 | Distance Measures for Tumor Evolutionary Trees | Yes-Poster only | Layla Oesper |
|
EvoCompGen COSI |
| 403 | Evolution of plant growth-promoting and plant-associated pathogenic bacteria in environmental samples | Yes-Poster only | Sascha Patz |
|
EvoCompGen COSI |
| 434 | An Offline Alignment-free Whole-Genome Distance Calculator for Large-scale Bacterial Analyses | Yes-Poster only | Gleb Goussarov |
|
EvoCompGen COSI |
| 438 | Graph-based network analysis of transcriptional regulation pattern divergence in duplicated yeast gene pairs | Yes-Talk and Poster | Gatis Melkus |
Gatis Melkus |
EvoCompGen COSI |
| 443 | Choosing amino-acid replacement models | Yes-Talk and Poster | Lars Arvestad |
Lars Arvestad |
EvoCompGen COSI |
| 447 | Transposon amplification as contributor to enhancer redundancy | Yes-Poster only | Leila Taher |
|
EvoCompGen COSI |
| 496 | Accurate and Efficient Cell Lineage Tree Inference from Noisy Single Cell Data: the Maximum Likelihood Perfect Phylogeny Approach | Yes-Talk and Poster | Yufeng Wu |
Yufeng Wu |
EvoCompGen COSI |
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| 500 | Enumerating Galled Networks | Yes-Talk only | |
Louxin Zhang |
EvoCompGen COSI |
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| 527 | Machine learning based Phylogenetic profilling (MLPP) - using local co-evolution for functional interaction prediction and uncovering evolutionary insights | Yes-Poster only | Doron Stupp |
|
EvoCompGen COSI |
| 568 | Computing a Yeast tree of life | Yes-Poster only | Ann-Marie Keane |
|
EvoCompGen COSI |
| 572 | A unified nomenclature for vertebrate olfactory receptors | Yes-Poster only | Tsviya Olender |
|
EvoCompGen COSI |
| 585 | Kmer-db: instant evolutionary distance estimation | Yes-Poster only | Adam Gudys |
|
EvoCompGen COSI |
| 587 | EVOLUTIONARY MOTIFS- A NOVEL WAY TO DEFINE EVOLUTION ACROSS A THOUSAND OF SPECIES | Yes-Poster only | Hodaya Beer |
|
EvoCompGen COSI |
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| 601 | Differences in gene-network architecture underpin extreme polyphenism in ants | No | |
|
EvoCompGen COSI |
| 629 | Viruses adopt non-optimal codon usage | Yes-Poster only | Gon Carmi |
|
EvoCompGen COSI |
| 643 | Accounting for calibration uncertainty: Bayesian molecular dating as a “doubly intractable” problem | Yes-Talk and Poster | Stephane Guindon |
Stephane Guindon |
EvoCompGen COSI |
| 674 | Reconstructions of 250 ancestral genomes across the eukaryotic kingdom | Yes-Poster only | Camille Berthelot |
|
EvoCompGen COSI |
| 690 | Improving classification of novel genes into known gene families via the phylo-kmers | Yes-Talk and Poster | Benjamin Linard |
Fabio Pardi |
EvoCompGen COSI |
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| 702 | A Birth-Death-Innovation model for the human regulatory network. | No | |
|
EvoCompGen COSI |
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| 704 | Information theoretic detection of horizontal gene transfer | No | |
|
EvoCompGen COSI |
| 707 | A Pan-Cancer Survey of Cell Line/Tumor Similarity by Genomic Profiles using TumorComparer | Yes-Poster only | Augustin Luna |
|
EvoCompGen COSI |
| 709 | An updated view of the oligosaccharyltransferase complex in Plasmodium and other protists | Yes-Poster only | Stella Tamana |
|
EvoCompGen COSI |
| 711 | Orthology Benchmarking in the Quest for Orthologs Community | Yes-Poster only | Adrian Altenhoff |
|
EvoCompGen COSI |
| 729 | Analysis of recurrent mutations within cancers reveals widespread patterns of convergent evolution | Yes-Poster only | Asli Kucukosmanoglu |
|
EvoCompGen COSI |
| 747 | Spliced alignment for the reconstruction of gene and transcript evolution | Yes-Talk and Poster | Safa Jammali |
Safa Jammali |
EvoCompGen COSI |
| 773 | The rare large structured ncRNA GOLLD in Mycobacterium | Yes-Poster only | Sergio Morgado |
|
EvoCompGen COSI |
| 826 | Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignments | Yes-Talk and Poster | Yue Zhang |
David Sankoff |
EvoCompGen COSI |
| 858 | GEMME: a simple and fast global epistatic model predicting mutational effects | Yes-Poster only | Elodie Laine |
|
EvoCompGen COSI |
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| 863 | Amino acid exchangeability parameters in models of protein evolution are strongly structure dependent and non-stationary across the tree of life | Yes-Talk only | |
Edward Braun |
EvoCompGen COSI |
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| 869 | Examination of transcriptional programs within sub-clones in Multiple Myeloma | No | |
|
EvoCompGen COSI |
| 871 | Fast and scalable placement of protein sequences into hierarchical orthologous groups | Yes-Poster only | Victor Rossier |
|
EvoCompGen COSI |
| 873 | Pairtree: fast cancer phylogeny reconstruction using multiple samples | Yes-Talk and Poster | Jeff Wintersinger |
Jeff Wintersinger |
EvoCompGen COSI |
| 883 | EVcouplings.org: web service for analysis of protein coevolution and prediction of 3D structures and mutation effects | Yes-Poster only | Christian Dallago |
|
EvoCompGen COSI |
| 912 | DGINN, an automated pipeline for the detection of genetic innovations on genes engaged in evolutionary arms races | Yes-Poster only | Lea Picard |
|
EvoCompGen COSI |
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| 929 | The influence of fluctuating population densities on evolutionary dynamics | No | |
|
EvoCompGen COSI |
| 941 | Protein Sequence Space: Where Nature Rises above Randomness | Yes-Poster only | Laura Weidmann |
|
EvoCompGen COSI |
| 942 | Evolution of the Metazoan Protein Domain Toolkit. | Yes-Talk and Poster | Maureen Stolzer |
Maureen Stolzer |
EvoCompGen COSI |
| 952 | ProPhyC: A probabilistic, phylogeny-based approach for hierarchical classification of genomes | Yes-Poster only | Yun Zhang |
|
EvoCompGen COSI |
| 958 | Growth patterns and driver effects from individual samples provide insights in tumor evolution | Yes-Talk and Poster | Leonidas Salichos |
Leonidas Salichos |
EvoCompGen COSI |
| 964 | Harmonising genome annotation through orthology | Yes-Poster only | Maarten Reijnders |
|
EvoCompGen COSI |
| 998 | DAIO: Domain-architecture aware inference of orthologs for the classification of Herpesviridae proteins | Yes-Poster only | Christian Zmasek |
|
EvoCompGen COSI |
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| 1031 | Reading the book of life: the language of genomes | No | |
|
EvoCompGen COSI |
| 1040 | Orthology matters when inferring difficult phylogenies - an example on the Lophotrochozoa | Yes-Poster only | David Dylus |
|
EvoCompGen COSI |
| 1052 | Computational approach to compare the evolutionary and cancer-associated breakpoint hotspots on the human genome | Yes-Poster only | Golrokh Kiani |
|
EvoCompGen COSI |
| 1074 | An integrative computational evolutionary approach to accelerate the discovery of molecular targets in prevalent under-studied pathogens | Yes-Poster only | Janani Ravi |
|
EvoCompGen COSI |
| 1079 | Comparative landscape genomics of foundation woodland tree species | Yes-Poster only | Kevin Murray |
|
EvoCompGen COSI |
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| 1120 | Evolutionary divergence of the insect disease-encoding Serratia plasmid pADAP | No | |
|
EvoCompGen COSI |
| 1163 | Genome-wide analysis of mutational impact on post translational modification | Yes-Poster only | Yiwei Ling |
|
EvoCompGen COSI |
| 1238 | Transcriptional rewiring via promoter sequences in Salmonella | Yes-Poster only | Wim Cuypers |
|
EvoCompGen COSI |
| 1253 | SeMPI 2.0: A web server for the genome-based prediction of the structure of Natural Products | Yes-Poster only | Stefan Günther |
|
EvoCompGen COSI |
| 1256 | Inferring Credible Horizontal Gene Transfers | Yes-Poster only | Agnieszka Mykowiecka |
|
EvoCompGen COSI |
| 1304 | COVTree: Coevolution in overlapped sequences by tree analysis server | Yes-Poster only | Elin Teppa |
|
EvoCompGen COSI |
| 1327 | G-quadruplexes evolution in transcriptomes | Yes-Poster only | Anaïs Vannutelli |
|
EvoCompGen COSI |
| 1328 | Gene tree and transcript tree construction using splicing orthology groups | Yes-Poster only | Esaie Kuitche Kamela |
|
EvoCompGen COSI |
| 1363 | Whole genome sequencing and comparative genomics of Japanese Horned beetle | Yes-Poster only | Yuki Kagaya |
|
EvoCompGen COSI |
| 1394 | Using the evolutionary model of the secondary structure prediction space to align the amino acid sequences | Yes-Poster only | Jhih-Siang Lai |
|
EvoCompGen COSI |
| 65 | GO FEAT2: an online tool for functional annotation and comparative analysis of metagenomes | Yes-Poster only | Fabricio Araujo |
|
Function COSI |
| 68 | OutCyte: a novel tool for predicting unconventional protein secretion | Yes-Poster only | Linlin Zhao |
|
Function COSI |
| 75 | A proteome-wide resource for eukaryotic peripheral membrane proteins | Yes-Poster only | Katerina Nastou |
|
Function COSI |
| 118 | BUSCA for the annotation of protein subcellular localization | Yes-Talk and Poster | Castrense Savojardo |
Castrense Savojardo |
Function COSI |
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| 135 | Towards evolution-guided protein design | Yes-Talk only | |
Martin Weigt |
Function COSI |
| 155 | Metric Learning on Expression Data for Gene Function Prediction | Yes-Talk and Poster | Stavros Makrodimitris |
Stavros Makrodimitris |
Function COSI |
| 173 | Geometric Deep Learning Methods for Large-Scale Structure-Based Protein Function Prediction | Yes-Talk and Poster | Vladimir Gligorijevic |
Vladimir Gligorijevic |
Function COSI |
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| 244 | EnzymeMiner: Web Server for Automated Mining and Annotation of Soluble Enzymes in Genomic Databases | Yes-Poster only | Jiří Hon |
|
Function COSI |
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| 271 | INGA 2.0: improving protein function prediction for the dark proteome | No | |
|
Function COSI |
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| 289 | Predictability of Human Differential Gene Expression | Yes-Talk only | |
Megan Crow |
Function COSI |
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| 303 | Hayai-Annotation Plants: Ultra-fast and accurate functional gene annotation system based on protein existence level | Yes-Poster only | Andrea Ghelfi |
|
Function COSI |
| 321 | Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates | Yes-Poster only | Daniele Raimondi |
|
Function COSI |
| 347 | Unravelling the Dynamicity of POU2F1 based on Evolutionary Conservation and Structure Network Analysis | Yes-Poster only | Sagnik Sen |
|
Function COSI |
| 405 | CATH-Gardener: a luigi-based python pipeline to generate Functional Families (FunFams) for “mega” superfamilies in CATH | Yes-Poster only | Nicola Bordin |
|
Function COSI |
| 416 | Updates on the Critical Assessment of Function Annotation Challenge Series | Yes-Talk and Poster | Iddo Friedberg |
Iddo Friedberg |
Function COSI |
| 422 | Gene Prioritization Using Scalable Matrix Completion with Multi-Omics Side Information and Deep Learning | Yes-Poster only | Pooya Zakeri |
|
Function COSI |
| 444 | The evolutionary signal in metagenome phyletic profiles predicts many gene functions | Yes-Talk and Poster | Vedrana Vidulin |
Vedrana Vidulin |
Function COSI |
| 460 | Not all protein modification sites are created equal: Insights from a human-specific substitution matrix | Yes-Talk and Poster | Tair Shauli |
Tair Shauli |
Function COSI |
| 466 | Identification of putative trascription factors explain Leishmania spp. disease types | Yes-Poster only | J. Eduardo Martinez |
|
Function COSI |
| 482 | Commonalities of differential expression across thousands of conditions | Yes-Poster only | Nathaniel Lim |
|
Function COSI |
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| 493 | An Evolutionary Calculus for Identifying Genes under Selection in Mutational Landscapes | Yes-Talk only | |
Olivier Lichtarge |
Function COSI |
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| 552 | Deep mutational scanning and statistical inference to understand and redesign serine-proteases specificity | Yes-Poster only | Valentin Senlis |
|
Function COSI |
| 571 | Searching for new N-terminal acetyltransferases | Yes-Poster only | Bojan Krtenic |
|
Function COSI |
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| 577 | Exploring the uncharacterized human proteome using neXtProt | No | |
|
Function COSI |
| 579 | A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data | Yes-Poster only | Emilian Jungwirth |
|
Function COSI |
| 658 | How does my drug target function in health and disease? | Yes-Poster only | Denise Carvalho-Silva |
|
Function COSI |
| 666 | A Graph-based Method for Functional Annotation of InterPro Signatures | Yes-Poster only | Bishnu Sarker |
|
Function COSI |
| 677 | ProfileView: a pipeline based on multiple probabilistic models resolving the functional organization of the cryptochrome/photolyase protein family | Yes-Talk and Poster | Riccardo Vicedomini |
Riccardo Vicedomini |
Function COSI |
| 678 | Choosing the best annotation for functional enrichment testing | Yes-Talk and Poster | Julien Roux |
Julien Roux |
Function COSI |
| 755 | Exploring the potential of reverse-docking for protein functional prediction | Yes-Poster only | Marco Malatesta |
|
Function COSI |
| 757 | Enhanced enzyme annotation in UniProtKB using Rhea | Yes-Poster only | Anne Morgat |
|
Function COSI |
| 762 | Assessing Gene Ontology Automated Function Prediction Using Curated Ancestral Annotations | Yes-Poster only | Alex Warwick Vesztrocy |
|
Function COSI |
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| 832 | FFPred-GAN: improving protein function prediction with synthetic feature samples created by generative adversarial networks | No | |
|
Function COSI |
| 839 | sparql.uniprot.org: moving past search for research | Yes-Poster only | Jerven Bolleman |
|
Function COSI |
| 843 | eggNOG-mapper v2: Fast functional annotation of genomes and metagenomes based on precomputed orthology predictions from 5090 reference organisms | Yes-Poster only | Carlos P. Cantalapiedra |
|
Function COSI |
| 850 | Protein Function Annotation Using Deep Learning based Word Embedding | Yes-Poster only | Bishnu Sarker |
|
Function COSI |
| 852 | Predicting gene function through analysis of concordant gene transitions in eukaryote evolution. | Yes-Poster only | Riccardo Percudani |
|
Function COSI |
| 891 | UniRule - A semi-automatic pipeline for functional annotation | Yes-Poster only | Vishal Joshi |
|
Function COSI |
| 900 | Graph-Regularized Autoencoders for Protein Feature Learning | Yes-Talk and Poster | Meet Barot |
Meet Barot |
Function COSI |
| 911 | Large-Scale Benchmarking of Protein Descriptors for Protein Ligand Prediction in Target-Based Modelling and Proteochemometrics | Yes-Poster only | Heval Ataş |
|
Function COSI |
| 946 | Sequence to Function: Protein Function Prediction without experiments | Yes-Poster only | Mateo Torres |
|
Function COSI |
| 959 | CrowdGO: predicting protein functions using a wisdom of the crowd approach | Yes-Poster only | Maarten Reijnders |
|
Function COSI |
| 981 | Deciphering Protein Functional Complexity With Alternative Splicing Evolution | Yes-Talk and Poster | Diego Javier Zea |
Diego Javier Zea |
Function COSI |
| 1006 | New methods for searching for similar low complexity regions in proteins | Yes-Poster only | Patryk Jarnot |
|
Function COSI |
| 1028 | Site2Vec: Deep neural network based vector embeddings for protein-ligand binding sites | Yes-Poster only | Arnab Bhadra |
|
Function COSI |
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| 1029 | Data integration through heterogeneous ensembles | Yes-Talk only | |
T. M. Murali |
Function COSI |
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| 1072 | Creating functional maps of protein sequences | Yes-Poster only | Maximilian Miller |
|
Function COSI |
| 1149 | NetGO: Improving Large-scale Protein Function Prediction with Massive Network Information | Yes-Poster only | Shanfeng Zhu |
|
Function COSI |
| 1387 | Computing the Language of Life: NLP Approaches to Feature Extraction for Protein Family Classification | Yes-Poster only | Ananthan Nambiar |
|
Function COSI |
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| 1 | First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_ | No | |
|
General Comp Bio |
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| 5 | MANORAA.org: an Augmented Intelligent Drug Design System | No | |
|
General Comp Bio |
| 11 | Metadata Acquired from Clinical Case Reports: a resource for extracting information from clinical narratives | Yes-Poster only | J. Harry Caufield |
|
General Comp Bio |
| 22 | The BIG Data Center: from deposition to integration to translation | Yes-Poster only | Zhang Zhang |
|
General Comp Bio |
| 25 | A statistical model for screening high dimensional data | Yes-Poster only | Dianjing Guo |
|
General Comp Bio |
| 27 | Pharmacoepidemiologic Evaluation of Birth Defects from Health‑Related Postings in Social Media During Pregnancy | Yes-Poster only | Graciela Gonzalez‑hernandez |
|
General Comp Bio |
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| 36 | Identification of human and malaria parasite protein-protein interactions based on Short Linear Motifs (SLIMs) | No | |
|
General Comp Bio |
| 58 | Numerical Study of an Influenza Epidemic Dynamical Model with Diffusion | Yes-Poster only | Mohamed Ben-Romdhane |
|
General Comp Bio |
| 69 | Novel computational methods for therapeutic target identification and prioritization | Yes-Poster only | Vittorio Fortino |
|
General Comp Bio |
| 87 | Genetic Characterization of Rift Valley Fever Virus in Kenya | Yes-Poster only | Lucy Kariuki |
|
General Comp Bio |
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| 95 | A New D2 Statistic and Algorithm for Efficient Detection of Repetitive Sequences in Whole Genomes and in Short Sequencing Reads | Yes-Talk only | |
Xuegong Zhang |
General Comp Bio |
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| 96 | Comprehensive In-Silico Analysis on Predicting the Function of Coding Variants and SNPs in long non-coding RNAs (lncRNAs) in Phospholipase A2 Receptor 1 (PLA2R1) | No | |
|
General Comp Bio |
| 100 | Batch correction evaluation framework using a-priori gene-gene associations: applied to the GTEx dataset | Yes-Talk and Poster | Judith Somekh |
Judith Somekh |
General Comp Bio |
| 101 | Identification of heterogenous functional pathways for single-cell RNA-Sequencing data using Random Forests | Yes-Poster only | Hailun Wang |
|
General Comp Bio |
| 102 | FFT-Mutant kit. A novel library for the design of de novo mutations using mathematical modeling techniques, data mining and pattern recognition. | Yes-Poster only | David Medina |
|
General Comp Bio |
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| 113 | PANTHER Classification System – An integrated platform for genome-wide gene function analysis | Yes-Talk only | |
Huaiyu Mi |
General Comp Bio |
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| 123 | 20 Years Of The PSIPRED Protein Analysis Workbench | Yes-Poster only | Daniel Buchan |
|
General Comp Bio |
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| 130 | Average Mutability Underlying Sequences | No | |
|
General Comp Bio |
| 163 | Literature Triage Advances at Mouse Genome Informatics | Yes-Poster only | Li Ni |
|
General Comp Bio |
| 168 | Multi-omics approach for the study of Mycoplasma hyopneumoniae metabolism and the response of swine epithelial cells to infection | Yes-Poster only | Mariana G. Ferrarini |
|
General Comp Bio |
| 171 | EV-CNN: A web application for EnteroVirus Genotyping in Deep learning | Yes-Poster only | Chung-Yen Lin |
|
General Comp Bio |
| 172 | Elegance, Electronic Lab Notebook On Cloud: Digitize Experimental Designs And Results Into Wisdom From Discovery To Application | Yes-Poster only | Shu-Hwa Chen |
|
General Comp Bio |
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| 174 | Discovering novel driver mutations for breast, ovarian and prostate cancers using mutational and gene expression profiles from cancer datasets | No | |
|
General Comp Bio |
| 194 | Building database for the base quality score recalibration in the genetic variant calling | Yes-Poster only | Chang-Yong Lee |
|
General Comp Bio |
| 220 | Methods for detecting contribution of mutational signatures in cancer genomes | Yes-Poster only | Damian Wójtowicz |
|
General Comp Bio |
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| 225 | A transcriptomic database with an accessible web interface for the understanding of lung diseases: PulmonDB | No | |
|
General Comp Bio |
| 249 | Genome-wide methylome and transcriptome analysis reveals potential therapeutic targets for triple negative breast cancer | Yes-Poster only | Maoni Guo |
|
General Comp Bio |
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| 251 | Data-driven inference of crosstalk in the tumor microenvironment | No | |
|
General Comp Bio |
| 264 | CRAB: A Comprehensive Repository of Drug Resistant Determinants of Acinetobacter baumannii | Yes-Poster only | Tina Sharma |
|
General Comp Bio |
| 275 | Human Aging DNA Methylation Signatures are Conserved but Accelerated in Cultured Fibroblasts | Yes-Talk and Poster | Gabriel Sturm |
Gabriel Sturm |
General Comp Bio |
| 307 | Genomic Variants Calling Implemented Over SPARK MapReduce Framework : SPARK+GATK4+WDL+CROMWELL | Yes-Poster only | Ambarish Kumar |
|
General Comp Bio |
| 311 | Amino acid substitution scoring matrices specific to intrinsically disordered regions in proteins | Yes-Poster only | Rakesh Trivedi |
|
General Comp Bio |
| 312 | Integration resource for human cancer cell line multiomics data and functional investigation for proteogenomics | Yes-Poster only | Daejin Hyung |
|
General Comp Bio |
| 314 | Convergent evolution of anhydrobiosis-related proteins in Tardigrades suggested by multi-oimcs analysis of Echiniscus testudo | Yes-Poster only | Yumi Murai |
|
General Comp Bio |
| 333 | Deciphering the landscape of phosphorylated HLA-I ligands | Yes-Talk and Poster | Marthe Solleder |
Marthe Solleder |
General Comp Bio |
| 341 | Analysis of coherent network partitions reveal protein complexes in large-scale protein-protein interaction networks | Yes-Poster only | Sara Omranian |
|
General Comp Bio |
| 342 | MS Atlas - A molecular map of brain lesion stages in progressive multiple sclerosis | Yes-Poster only | Tobias Frisch |
|
General Comp Bio |
| 373 | The genetic code structure reflects the impact of different types of translational inaccuracies | Yes-Poster only | Małgorzata Wnętrzak |
|
General Comp Bio |
| 385 | An online repository for diseases associated with amyloid deposition | Yes-Poster only | Katerina Nastou |
|
General Comp Bio |
| 388 | Optimization of drugs administration via control theory | Yes-Poster only | Fabrizio Angaroni |
|
General Comp Bio |
| 414 | Read Mapping on Genome Variation Graphs | Yes-Poster only | Kavya Vaddadi |
|
General Comp Bio |
| 418 | Modeling effector-host interactions in the context of the barley protein interactome | Yes-Poster only | Valeria Velasquez-Zapata |
|
General Comp Bio |
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| 436 | Cancer-related single amino acid variation prediction | No | |
|
General Comp Bio |
| 446 | Active transitivity clustering for memory- and computing efficient clustering on large datasets. | Yes-Poster only | Mathias Bøgebjerg |
|
General Comp Bio |
| 456 | A deep learning model for predicting gene dependencies of cancer by integrated genomic profiles | Yes-Poster only | Yu-Chiao Chiu |
|
General Comp Bio |
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| 457 | Rapid genotype imputation from large-scale sequence data | Yes-Talk only | |
Brian Browning |
General Comp Bio |
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| 470 | Consensus approaches for CRISPR guide design | Yes-Poster only | Dimitri Perrin |
|
General Comp Bio |
| 499 | DNA methylation and treatment response to de-methylation agents: genome-wide profiling and prediction signature identification through machine learning | Yes-Poster only | Zhifu Sun |
|
General Comp Bio |
| 501 | A de novo RNA-seq short read assembler by a recursive breakpoint detection, branch extension, and merging approach | Yes-Poster only | Yu-Wei Tsay |
|
General Comp Bio |
| 511 | Leveraging DNA Methylation Data to Better Understanding Transcription Factor Binding Site Selection | Yes-Poster only | Fei-Man Hsu |
|
General Comp Bio |
| 516 | Association of variants in coding regions with clinical data in Colombian patients using data mining techniques. | Yes-Poster only | Jennifer Vélez |
|
General Comp Bio |
| 520 | Transcriptome analysis for discovering biomarkers in the targeted cancer therapy | Yes-Poster only | Hyejeong Gu |
|
General Comp Bio |
| 521 | ATAC-graph: analyzing and visualizing chromatin accessibility with ATAC-seq | Yes-Poster only | Pao-Yang Chen |
|
General Comp Bio |
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| 522 | BS-Seeker3: Ultrafast pipeline for bisulfite sequencing | No | |
|
General Comp Bio |
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| 526 | Prediction of drug-target interactions via deep learning with convolution on protein sequences | No | |
|
General Comp Bio |
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| 534 | Tissue transcriptomes and machine learning methods can enhance genetic diagnosis of hereditary disease | No | |
|
General Comp Bio |
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| 554 | A Bi-clustering of metabolic data and an R package for metabolic bicluster analysis | No | |
|
General Comp Bio |
| 555 | Data handling challenges in the Organ on a Chip informatic platform | Yes-Poster only | Pavel Vazquez Faci |
|
General Comp Bio |
| 563 | The origin of the central dogma through conflicting multilevel selection | Yes-Talk and Poster | Nobuto Takeuchi |
Nobuto Takeuchi |
General Comp Bio |
| 580 | Simultaneous unsupervised inference of protein-protein contacts and interactions | Yes-Poster only | Aalt D.J. Van Dijk |
|
General Comp Bio |
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| 589 | NOVEL SOFTWARE ‘TRIBES’ ENABLES DISTANT RELATIONSHIP AND DISEASE VARIANT DISCOVERY IN AMYOTROPHIC LATERAL SCLEROSIS | Yes-Talk only | |
Natalie Twine |
General Comp Bio |
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| 594 | Finding a critical gene related on clubroot disease resistance of Brassica rapa phenotyping by ‘Yeoncheon’provincial isolate | Yes-Poster only | Suhyoung Park |
|
General Comp Bio |
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| 602 | Predicting phenotypic diversity from molecular and genetic data | No | |
|
General Comp Bio |
| 620 | Redundancy Removal from NGS Data on Microbial Genome | Yes-Poster only | Marcus Braga |
|
General Comp Bio |
| 623 | Bioinformatics approach to support risk assessment in toxicology | Yes-Poster only | Pranika Singh |
|
General Comp Bio |
| 632 | Gene-specific correlation analysis of mRNA and protein levels in colorectal cancer cell lines | Yes-Poster only | Fatemeh Zamanzad Ghavidel |
|
General Comp Bio |
| 634 | OpenRiskNet Part I: Development of an open e-infrastructure predictive toxicology and risk assessment | Yes-Poster only | Thomas Exner |
|
General Comp Bio |
| 637 | An introduction to genome graphs using GenGraph and python. | Yes-Poster only | Jon Ambler |
|
General Comp Bio |
| 640 | Assimilation of high-resolution HLA alleles from low-resolution serological typing; a computational approach. | Yes-Poster only | Adriana Toutoudaki |
|
General Comp Bio |
| 649 | In silico structural characterization and moleculardocking for human TAS2R16 receptor | Yes-Poster only | Catiane Souza |
|
General Comp Bio |
| 680 | atyPeak: Correlating TRBS ChIP-seq peaks from multiple datasets in ReMap using deep convolutional autoencoders | Yes-Poster only | Quentin Ferré |
|
General Comp Bio |
| 691 | RADeep: The Rare Anaemia Disorders European Epidemiological Platform | Yes-Poster only | Stella Tamana |
|
General Comp Bio |
| 725 | MultiBaC: A strategy to remove batch effect between different omic data types | Yes-Poster only | Manuel Ugidos |
|
General Comp Bio |
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| 751 | Additive Dose Response Models: Defining Synergy | No | |
|
General Comp Bio |
| 758 | Context-specific interaction networks from vector representation of words | Yes-Poster only | Matteo Manica |
|
General Comp Bio |
| 767 | Contribution of synthetic lethality to cancer risk and onset time across human tissues | Yes-Talk and Poster | Nishanth Ulhas Nair |
Nishanth Ulhas Nair |
General Comp Bio |
| 780 | A multi-modal knowledge-based hybrid feature selection model for identification of cancer biomarkers | Yes-Poster only | Osama Hamzeh |
|
General Comp Bio |
| 786 | Combining multiple features and algorithms to learn antimicrobial resistance genotype-phenotype relationships | Yes-Poster only | Kara K. Tsang |
|
General Comp Bio |
| 798 | OpenRiskNet Part II: Predictive Toxicology based on Adverse Outcome Pathways and Biological Pathway Analysis | Yes-Poster only | Chris Evelo |
|
General Comp Bio |
| 817 | OpenRiskNet Part III: Modelling Services in Chemical/Nano-safety, Environmental Science and Pharmacokinetics | Yes-Poster only | Stefan Kramer |
|
General Comp Bio |
| 821 | Genome-wide analysis shows multiple genetic loci shared between major depressive disorder and intelligence | Yes-Poster only | Shahram Bahrami |
|
General Comp Bio |
| 838 | Selective neuronal vulnerability in Alzheimer's disease: an integrative network-based analysis | Yes-Poster only | Vicky Yao |
|
General Comp Bio |
| 856 | APPLICATION OF MACHINE LEARNING TECHNIQUES TO FEATURE EXTRACTION AND CLASSIFICATION FOR SICKLE CELL DISEASE DIAGNOSIS AND MANAGEMENT | Yes-Poster only | Tinuke Oladele |
|
General Comp Bio |
| 895 | Meta-analysis of C. elegans single-cell developmental data reveals multi-frequency oscillation in gene activation | Yes-Poster only | Luke Hutchison |
|
General Comp Bio |
| 916 | Inferring pathway activation/suppression to rank tumors by sensitivity to immune checkpoint therapy | Yes-Talk and Poster | Boris Reva |
Boris Reva |
General Comp Bio |
| 917 | P. aeruginosa in cystic fibrosis lungs: within host sub-clone diversity is implicated in differential virulence factor expression | Yes-Poster only | Aaron Weimann |
|
General Comp Bio |
| 927 | DORMAN: Database Of Reconstructed MetAbolic Networks | Yes-Poster only | A. Ercument Cicek |
|
General Comp Bio |
| 931 | Deep2Full: Computational strategies for predicting large complementary fraction of deep mutational scan outcomes | Yes-Poster only | Sruthi C. K. |
|
General Comp Bio |
| 943 | ELIXIR 5 years on: Providing a coordinated European Infrastructure for Life Science Data and Services | Yes-Poster only | Jennifer Harrow |
|
General Comp Bio |
| 966 | Nanopore base-calling from a perspective of instance segmentation | Yes-Poster only | Arda Akdemir |
|
General Comp Bio |
| 970 | Large blocklength LDPC codes for Illumina sequencing-based DNA storage | Yes-Talk and Poster | Shubham Chandak |
Shubham Chandak |
General Comp Bio |
| 975 | Controlling the False Discovery Rate in Epistasis Test Prioritization | Yes-Poster only | A. Ercument Cicek |
|
General Comp Bio |
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| 1037 | Leveraging single-cell RNA-seq to infer cell type-specific somatic mutations and mosaicism in Alzheimer's disease. | Yes-Talk only | |
Carles Boix |
General Comp Bio |
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| 1043 | Evaluation of software for mutational signature analysis based on realistic synthetic data | Yes-Poster only | Steven G Rozen |
|
General Comp Bio |
| 1056 | Delineating features associated with non-small-cell lung cancer | Yes-Poster only | Murlidharan Nair |
|
General Comp Bio |
| 1062 | Unsupervised noise removal strategy for mass cytometry data | Yes-Poster only | Maria-Fernanda Senosain |
|
General Comp Bio |
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| 1078 | Integrative Bayesian analysis of epistatic effects using time-series RNA-seq, ChIP-seq, and ATAC-seq data. | No | |
|
General Comp Bio |
| 1085 | Genome-scale genetic interaction analysis to rewire comprehensive metabolic models of Escherichia coli | Yes-Poster only | Ai Muto-Fujita |
|
General Comp Bio |
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| 1090 | CAFE: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands | Yes-Talk only | |
Rajeev Azad |
General Comp Bio |
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| 1094 | Immune signatures and other correlates of somatic retrotransposon activity in human cancers | No | |
|
General Comp Bio |
| 1116 | GeneWalk: function association of individual genes through network representation learning with random walks | Yes-Poster only | Robert Ietswaart |
|
General Comp Bio |
| 1118 | OpenRiskNet Part IV: WEKA Machine Learning Services for the Prediction of Half-Lifes of Chemicals and Nanoparticle Transport | Yes-Poster only | Atif Raza |
|
General Comp Bio |
| 1119 | Detection and prioritization of very low frequency somatic cancer mutations in tumor derived circulating cell-free DNA sequencing data | Yes-Poster only | Preetida Bhetariya |
|
General Comp Bio |
| 1123 | Generating patient insights in chronic obstructive pulmonary disease (COPD) with social media listening study | Yes-Poster only | Florian S. Gutzwiller |
|
General Comp Bio |
| 1126 | Bringing the Algorithms to the Data - Distributed Medical Analytics using the Personal Health Train Paradigm | Yes-Poster only | Marius Herr |
|
General Comp Bio |
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| 1128 | The European Variation Archive: Genetic variation archiving and accessioning for all species | | |
|
General Comp Bio |
| 1129 | Analysis options for whole human genome sequencing | Yes-Poster only | Tomasz Stokowy |
|
General Comp Bio |
| 1132 | Structure-based identification of new HDAC substrates | Yes-Poster only | Julia K. Varga |
|
General Comp Bio |
| 1133 | Construction of bioinformatics workflow system (Bio-Express) for massive genomic sequencing data analysis | Yes-Poster only | Byungwook Lee |
|
General Comp Bio |
| 1134 | Integrating Genome3D structural annotations and predicted secondary structures in InterPro 7 | Yes-Poster only | Typhaine Paysan-Lafosse |
|
General Comp Bio |
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| 1135 | Predicting pathogenic non-coding variants on imbalanced data sets | No | |
|
General Comp Bio |
| 1136 | Spatio-molecular dissection of the breast cancer metastatic microenvironment | Yes-Poster only | Johanna Klughammer |
|
General Comp Bio |
| 1137 | The Study of Troglitazone Liver Toxicity via Metabolomics and in silico Approaches | Yes-Poster only | Mathias Nuamah |
|
General Comp Bio |
| 1139 | Adapter removal with no a priori knowledge of adapter sequences | Yes-Poster only | Jui-Hung Hung |
|
General Comp Bio |
| 1141 | The multiple myeloma risk allele at 5q15 lowers ELL2 expression and increases ribosomal gene expression in malignant plasma cells | Yes-Poster only | Mina Ali |
|
General Comp Bio |
| 1142 | Predicting the effects of SNPs on transcription factor binding affinity | Yes-Poster only | Sierra Nishizaki |
|
General Comp Bio |
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| 1148 | Grid-Constrained Dimensionality-Reduction for Single-Cell RNA-Seq Summarization | No | |
|
General Comp Bio |
| 1156 | ENCODE Data on the Cloud | Yes-Poster only | Paul Sud |
|
General Comp Bio |
| 1162 | Induced pluripotent stem cells of patients with Tetralogy of Fallot reveal alterations in cardiomyocyte differentiation | Yes-Poster only | Marcel Grunert |
|
General Comp Bio |
| 1166 | BLOCKCHAIN-BASED DYNAMIC CONSENT MODEL TO SUPPORT GENOMIC DATA SHARING IN CLINICAL INFORMATICS | Yes-Poster only | Faisal Albalwy |
|
General Comp Bio |
| 1167 | Analytical Methods to Identify Tumor Heterogeneity and Rare Subclones in Single Cell DNA Sequencing Data from Targeted Panels | Yes-Poster only | Sombeet Sahu |
|
General Comp Bio |
| 1170 | Dynamically Defined Microdomains in Rho GTPase Signaling | Yes-Poster only | Xuexia Jiang |
|
General Comp Bio |
| 1180 | Identification of potential blood biomarkers for Parkinson’s disease by gene expression and DNA methylation data integration analysis | Yes-Poster only | Changliang Wang |
|
General Comp Bio |
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| 1181 | Predicting binding affinity of protein and DNA interactions by incorporating ChIP-seq and protein structure data | No | |
|
General Comp Bio |
| 1185 | TCRex: a webtool for the prediction of T-cell receptor sequence epitope specificity | Yes-Poster only | Sara Benmohammed |
|
General Comp Bio |
| 1189 | Hierarchical LDA reveals reasonable profiles of mutation signatures in cancer genomes | Yes-Poster only | Taro Matsutani |
|
General Comp Bio |
| 1190 | PMgram: an interactive web-based prediction model nomogram generator | Yes-Poster only | Sungyoung Lee |
|
General Comp Bio |
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| 1192 | IVIpath: Interactive Visualization and Integration of Pathways | No | |
|
General Comp Bio |
| 1194 | A Computational Platform for Screening Large-Scale ctDNA Data | Yes-Poster only | Chieh-Wei Huang |
|
General Comp Bio |
| 1197 | A Robust Method to Identify Complex Associations of Gene-Sets with a Censored Survival Time Outcomes | Yes-Poster only | Stanley Pounds |
|
General Comp Bio |
| 1202 | Enzyme Prediction with Word Embedding Approach | Yes-Poster only | Volkan Atalay |
|
General Comp Bio |
| 1204 | Importance of Visit Type in Understanding Results from Phenome-Wide Association Studies: Results from a Visit-WAS | Yes-Poster only | Mary Regina Boland |
|
General Comp Bio |
| 1205 | OncoMX: enabling exploration of integrated cancer biomarker data in the context of mutation, differential expression, conserved expression patterns, and automatically mined literature evidence | Yes-Poster only | Hayley Dingerdissen |
|
General Comp Bio |
| 1208 | A two-stage approach for detection, segmentation and classification: an application in cervical cytology image | Yes-Poster only | Jing Ke |
|
General Comp Bio |
| 1210 | The evolutionary traceability of proteins | Yes-Poster only | Ingo Ebersberger |
|
General Comp Bio |
| 1211 | Tracing functional protein interaction networks using a feature-aware phylogenetic profiling | Yes-Poster only | Julian Dosch |
|
General Comp Bio |
| 1212 | Identification and Characterization of MicroRNAs Associated with Somatic Copy Number Alterations in Cancer | Yes-Poster only | Jihee Soh |
|
General Comp Bio |
| 1213 | Integrated genome annotation to functional annotation pipeline for plants | Yes-Poster only | Junhyung Park |
|
General Comp Bio |
| 1214 | A statistical method for the de novo inference of the regulators involved in genetic buffering | Yes-Poster only | Huai-Kuang Tsai |
|
General Comp Bio |
| 1216 | Prediction of survival and recurrence of pancreatic cancer by integrating multi-omics data | Yes-Poster only | Bin Baek |
|
General Comp Bio |
| 1217 | Genome-wide detection of structural variations in cancer | Yes-Poster only | Yeonghun Lee |
|
General Comp Bio |
| 1219 | Hierarchical and programmable one-pot synthesis of oligosaccharides | Yes-Poster only | Cheng-Wei Cheng |
|
General Comp Bio |
| 1221 | Towards computational drug screening: profiling drug toxicity in the context of a biological network | Yes-Poster only | Artem Lysenko |
|
General Comp Bio |
| 1222 | Hands-On Training in Single Cell Data Analytics with scOrange | Yes-Poster only | Martin Strazar |
|
General Comp Bio |
| 1228 | VarFish – fishing for causative variants | Yes-Poster only | Dieter Beule |
|
General Comp Bio |
| 1233 | Estimation of microbe viability from human oral to gut | Yes-Poster only | Shion Hosoda |
|
General Comp Bio |
| 1235 | FAIRDOM: FAIR Data Management for Life Science | Yes-Poster only | Olga Krebs |
|
General Comp Bio |
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| 1236 | A pipeline for characterization of possible ncRNA homologs in BLAST output | No | |
|
General Comp Bio |
| 1252 | Unravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seq | Yes-Poster only | Simona Cristea |
|
General Comp Bio |
| 1257 | Causes and Consequences of Breakdown of Robustness: Theoretical framework, computational model, and application to metastasis | Yes-Poster only | Maryl Lambros |
|
General Comp Bio |
| 1258 | MULTI-VIEW PREDICTION OF PROTEIN SUBCELLULAR LOCALIZATION | Yes-Poster only | Gokhan Ozsari |
|
General Comp Bio |
| 1259 | maTE: Discovering Expressed MicroRNA - Target Interactions | Yes-Poster only | Malik Yousef |
|
General Comp Bio |
| 1265 | Uncovering gene-specific branching dynamics with a multiple output branched Gaussian Process (mBGP) | Yes-Poster only | Sumon Ahmed |
|
General Comp Bio |
| 1268 | Pentachlorophenol affects RIG-1 antiviral pathway that produces type I interferon at the transcriptional level | Yes-Poster only | Yayoi Natsume-Kitatani |
|
General Comp Bio |
| 1275 | dv-trio : a trio variant calling pipeline using DeepVariant with Mendelian error correction. | Yes-Poster only | Eddie Ip |
|
General Comp Bio |
| 1277 | CASP_COMMONS: A Community Wide Program in Data Guided Protein Structure Prediction | Yes-Poster only | Chin-Hsien Tai |
|
General Comp Bio |
| 1286 | HyperMut: a method to detect localized hypermutation with stringent control for confounders | Yes-Poster only | David Mas-Ponte |
|
General Comp Bio |
| 1287 | HyperCell: outlying, mislabelled and diverged cancer cell lines revealed by a multi-omics approach | Yes-Poster only | Marina Salvadores |
|
General Comp Bio |
| 1291 | Tamock – Simulation of habitat-specific benchmark data in metagenomics | Yes-Poster only | Samuel Gerner |
|
General Comp Bio |
| 1293 | PathRacer: racing profile HMM paths on assembly graph | Yes-Poster only | Alexander Shlemov |
|
General Comp Bio |
| 1295 | Semantic annotation of scientific media using controlled vocabularies with iCLiKVAL | Yes-Poster only | Naveen Kumar |
|
General Comp Bio |
| 1298 | HaDeX - analysis of data from hydrogen-deuterium exchange-mass spectrometry experiments | Yes-Poster only | Weronika Puchała |
|
General Comp Bio |
| 1308 | HyperMatch: a framework for detecting differential selection in human somatic cells | Yes-Poster only | Elizaveta Besedina |
|
General Comp Bio |
| 1315 | Integration and evaluation of scRNAseq-, bulk RNAseq and microarray-based gene coexpression data | Yes-Poster only | Takeshi Obayashi |
|
General Comp Bio |
| 1318 | Characterizing human iPSC-derived microglia by single-cell and bulk RNA sequencing | Yes-Poster only | Maria Zavodszky |
|
General Comp Bio |
| 1324 | solida.core: download, deploy and use an open-source and ready-to-use set of bioinformatic analysis pipelines | Yes-Poster only | Rossano Atzeni |
|
General Comp Bio |
| 1325 | PhenDB: Deciphering the microbiome. Large-scale prediction of microbial roles and traits | Yes-Poster only | Javier Geijo |
|
General Comp Bio |
| 1344 | Multi-cohort study identifies leukocytes shift associated to smoking | Yes-Poster only | Giulia Piaggeschi |
|
General Comp Bio |
| 1353 | dropSeqPipe - A SingleCell RNASeq pre-processing snakemake workflow | Yes-Poster only | Patrick Roelli |
|
General Comp Bio |
| 1354 | Dasa: a computational pipeline for differential ATAC-Seq analysis | Yes-Poster only | Alberto Riva |
|
General Comp Bio |
| 1355 | Interactive Quality Control and Analysis for Targeted Metabolomics Kits | Yes-Poster only | Mathias Kuhring |
|
General Comp Bio |
| 1361 | Methylation analysis of combined drug application in leukemia cell lines | Yes-Poster only | Yvonne Saara Gladbach |
|
General Comp Bio |
| 1364 | Castor: Reference-based error assessment and correction of long read assemblies | Yes-Poster only | Janet Lorv |
|
General Comp Bio |
| 1366 | Integrated bioinformatic analysis of -omics data reveals differentiation status of human hepatocellular carcinoma cell lines in association with drug-specific sensitivity | Yes-Poster only | Panagiotis Agioutantis |
|
General Comp Bio |
| 1368 | Drug repurposing using a simple omics integration approach for melanoma patients | Yes-Poster only | Yian Chen |
|
General Comp Bio |
| 1386 | An effective transcription factor binding site prediction model for Nuclear factor, Erythroid 2 like 2 (NFE2L2) | Yes-Poster only | Kalyani Dhusia |
|
General Comp Bio |
| 1390 | Multiple-Sample Somatic Variant Caller | Yes-Poster only | Idoia Ochoa |
|
General Comp Bio |
| 1391 | A interventional healthcare data resource for interpreting genetic and environment interaction | Yes-Poster only | Joon Ho Kang |
|
General Comp Bio |
| 1393 | The Importance of Privacy Preserving Machine Learning in Psychiatric Research | Yes-Poster only | Anne-Christin Hauschild |
|
General Comp Bio |
| 1398 | Multi-omic temporal analysis of Gene Expression in the Developing Neocortex | Yes-Poster only | Dermot Harnett |
|
General Comp Bio |
| 1402 | Calling full length transcripts with nucleotide precision using iTiSS | Yes-Poster only | Christopher Jürges |
|
General Comp Bio |
| 1403 | Medically Actionable Rare Variants In 50,000 Exomes From UK BioBank | Yes-Poster only | Suganthi Balasubramanian |
|
General Comp Bio |
| 1407 | Development of a transfer learning framework to predict recurrence of colon cancers | Yes-Poster only | Gahyun Kim |
|
General Comp Bio |
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| 4 | Reliable, precise, and fast detection of structural variants from long reads | No | |
|
HiTSeq COSI |
| 29 | BANDITS: a Bayesian hierarchical model for differential splicing accounting for sample-to-sample variability and mapping uncertainty | Yes-Talk and Poster | Simone Tiberi |
Simone Tiberi |
HiTSeq COSI |
| 30 | A flexible permutation approach to detect cell state transitions from high-throughput single-cell data | Yes-Poster only | Simone Tiberi |
|
HiTSeq COSI |
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| 32 | The use of technical replication for detection of low-level somatic mutations in next-generation sequencing | No | |
|
HiTSeq COSI |
| 33 | ntEdit: scalable genome assembly polishing | Yes-Poster only | Rene Warren |
|
HiTSeq COSI |
| 86 | Containerized open-source framework for NGS data analysis and management | Yes-Poster only | Roberto Vera Alvarez |
|
HiTSeq COSI |
| 89 | Discriminating true and false zeros in single-cell RNA-seq data in differential expression analysis and data imputation | Yes-Poster only | Xuegong Zhang |
|
HiTSeq COSI |
| 94 | SCOPE: a normalization and copy number estimation method for single-cell DNA sequencing | Yes-Poster only | Yuchao Jiang |
|
HiTSeq COSI |
| 98 | RNA-Seq of endogenous human stem cells and tumors to identify cancer-specific therapeutic targets | Yes-Poster only | Isabela Almeida |
|
HiTSeq COSI |
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| 105 | scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition | No | |
|
HiTSeq COSI |
| 114 | A method for inferring gene regulatory networks based on pseudo time-series gene expression profiles from single-cell RNA-seq data | Yes-Poster only | Kaito Uemura |
|
HiTSeq COSI |
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| 117 | DolphinNext: A graphical user interface for distributed data processing of high throughput genomics | No | |
|
HiTSeq COSI |
| 153 | A Bioinformatics Pipeline for Identifying Point Mutations in CML Patients | Yes-Poster only | Julia Vetter |
|
HiTSeq COSI |
| 161 | Development of an agnostic analysis method of RNA-seq data for the identification of potential novel biomarkers in liquid biopsy: application on Amyotrophic lateral sclerosis (ALS) patients. | Yes-Poster only | Gabriel Wajnberg |
|
HiTSeq COSI |
| 164 | Seq: A High-Performance Language for Genomics | Yes-Poster only | Bonnie Berger |
|
HiTSeq COSI |
| 170 | Automated Diagnosis of Viruses in Solanaceous crops in Colombia using High-throughput Sequencing Data | Yes-Poster only | Pablo Gutierrez |
|
HiTSeq COSI |
| 185 | A study on novel estimation method of cell differentiation lineage by single cell trajectory inference | Yes-Poster only | Shuhei Yao |
|
HiTSeq COSI |
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| 189 | Integrated breakpoint analysis and structural variation detection using sequencing reads from multiple sequencing technologies | No | |
|
HiTSeq COSI |
| 193 | NanoVar: Accurate Characterization of Patients’ Genomic Structural Variants Using Low-Depth Nanopore Sequencing | Yes-Poster only | Cheng Yong Tham |
|
HiTSeq COSI |
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| 228 | Food Poisoning Risk Prediction Pipeline Based on Shotgun Metagenomics Data | No | |
|
HiTSeq COSI |
| 255 | Counting genes, cells etc. When ecology meets cell biology. | Yes-Poster only | Leonid Bystrykh |
|
HiTSeq COSI |
| 268 | Integrative analysis of RNA-Seq and ChIP-Seq data using Pareto Optimization | Yes-Poster only | Yingying Cao |
|
HiTSeq COSI |
| 277 | 4C-seq data: Simulation and algorithm benchmarking | Yes-Poster only | Carolin Walter |
|
HiTSeq COSI |
| 285 | Management of Big Variant Data: Evaluation of Tools and Database Systems | Yes-Poster only | Mohamed Abouelhoda |
|
HiTSeq COSI |
| 287 | Single-cell Lineage Tracing by Integrating CRISPR-Cas9 Mutations With Transcriptomic Data | Yes-Poster only | Hamim Zafar |
|
HiTSeq COSI |
| 288 | Differential Expression Analysis with Latent Variable Models | Yes-Poster only | Joana Godinho |
|
HiTSeq COSI |
| 323 | Expression kinetics of differentiating mouse embryonic stem cells | Yes-Poster only | Fabian Titz-Teixeira |
|
HiTSeq COSI |
| 336 | Mapping genome-wide DNA methylation patterns in gliomas in context of IDH gene mutation status and REST transcription factor binding | Yes-Poster only | Bartosz Wojtas |
|
HiTSeq COSI |
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| 338 | A computational pipeline for proper circular RNA isoform reconstruction and quantification | No | |
|
HiTSeq COSI |
| 358 | MicroNAP: A pipeline to characterize genetic changes in engineered microbial strains based on Next Generation Sequencing data. | Yes-Poster only | Veronika Schusterbauer |
|
HiTSeq COSI |
| 377 | Using extended context information to construct somatic single nucleotide variant mutational signatures | Yes-Poster only | Kwong Leong John Wong |
|
HiTSeq COSI |
| 386 | Accurate determination of node and arc multiplicities in de Bruijn graphs using conditional random fields | Yes-Talk and Poster | Aranka Steyaert |
Aranka Steyaert |
HiTSeq COSI |
| 387 | Comparison of RNA-seq applications using Oxford Nanopore, Pacific Biosciences and Illumina technologies | Yes-Poster only | Weihong Qi |
|
HiTSeq COSI |
| 393 | Flexible Experimental Designs for Valid Single-cell RNA-sequencing Experiments Allowing Batch Effects Correction | Yes-Talk and Poster | Yingying Wei |
Yingying Wei |
HiTSeq COSI |
| 413 | Large-scale RNA-seq datasets enable the detection of genes with a differential expression dispersion in cancer | Yes-Poster only | Christophe Le Priol |
|
HiTSeq COSI |
| 429 | Genome sequence and comparative genomics of the rubber tree pathogen Pseudocercospora ulei | Yes-Poster only | Sandra Milena Gonzalez Sayer |
|
HiTSeq COSI |
| 440 | Beta-binomial modeling of CRISPR pooled screen data identifies target genes with greater sensitivity and fewer false negatives | Yes-Talk and Poster | Hyun-Hwan Jeong |
Hyun-Hwan Jeong |
HiTSeq COSI |
| 458 | Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling. | Yes-Talk and Poster | Mariano Gabitto |
Mariano Gabitto |
HiTSeq COSI |
| 459 | Mosaic loss of Y chromosome in brain tissue associated with late-stage Alzheimer's neuropathology. | Yes-Poster only | Mike Vermeulen |
|
HiTSeq COSI |
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| 476 | Subpopulation detection and their comparative analysis across single cell ex-periments with PopCorn | Yes-Talk only | |
Teresa Przytycka |
HiTSeq COSI |
| 479 | PipelineOlympics: Benchmarking of processing workflows for bisulfite sequencing data | Yes-Talk and Poster | Toth Reka |
Pavlo Lutsik |
HiTSeq COSI |
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| 488 | Single cell level characterization of the peripheral blood immune cells of opioid-dependent individuals | Yes-Poster only | Tanya Karagiannis |
|
HiTSeq COSI |
| 490 | Impact of batch effect and study design biases on identification of genetic risk factors in sequencing data | Yes-Poster only | Daniel P. Wickland |
|
HiTSeq COSI |
| 491 | DAMN fast: Dna Alignment using Multi-armed baNdits | Yes-Poster only | Tavor Baharav |
|
HiTSeq COSI |
| 504 | Spider and bagworm moth genomes reveal the diversity of silk protein motifs and its mechanical properties | Yes-Poster only | Nobuaki Kono |
|
HiTSeq COSI |
| 514 | Analysis of non-genetic variation in cancer by analyzing single cell transcriptome | Yes-Poster only | Yejin Lee |
|
HiTSeq COSI |
| 524 | Enrichment Analysis of k-mer Composition Enables Identification of Telomeres | Yes-Poster only | Broňa Brejová |
|
HiTSeq COSI |
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| 530 | Characterization of large-scale structural variants using Linked-Reads | Yes-Talk only | |
Can Alkan |
HiTSeq COSI |
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| 535 | NeuSomatic: Deep convolutional neural networks for robust somatic mutation detection | Yes-Poster only | Sayed Mohammad Ebrahim Sahraeian |
|
HiTSeq COSI |
| 543 | Phylum-wide genome sequencing of Tardigrada with ultra-low input | Yes-Poster only | Kazuharu Arakawa |
|
HiTSeq COSI |
| 548 | Realistic Simulation of NGS Data based on FFPE Samples | Yes-Poster only | Lanying Wei |
|
HiTSeq COSI |
| 562 | Encoding yeast genomic diversity using variation graphs | Yes-Poster only | Prithika Sritharan |
|
HiTSeq COSI |
| 575 | Bayesian deconvolution of somatic clones and pooled individuals with expressed variants in single-cell RNA-seq data | Yes-Talk and Poster | Yuanhua Huang |
Yuanhua Huang |
HiTSeq COSI |
| 605 | Genotyping structural variations using long reads data | Yes-Talk and Poster | Lolita Lecompte |
Lolita Lecompte |
HiTSeq COSI |
| 606 | A comprehensive benchmark of somatic CNV calling tools on short-read WGS and WES data | Yes-Poster only | Ana Popic |
|
HiTSeq COSI |
| 613 | Pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters | Yes-Poster only | Christine Jandrasits |
|
HiTSeq COSI |
| 617 | GraphAligner: Rapid and Versatile Sequence-to-Graph Alignment | Yes-Talk and Poster | Mikko Rautiainen |
Mikko Rautiainen |
HiTSeq COSI |
| 624 | Cogito: Automated and generic comparison of annotated genomic intervals | Yes-Poster only | Annika Buerger |
|
HiTSeq COSI |
| 651 | McSplicer: a probabilistic model for detecting local splicing variations from RNA-Seq data | Yes-Poster only | Israa Alqassem |
|
HiTSeq COSI |
| 685 | Effects of aging on circadian transcriptional dynamics in mice | Yes-Poster only | Antonios Papadakis |
|
HiTSeq COSI |
| 698 | Inference of DNA copy number alterations from single-cell RNA-sequencing data using transcriptional regulatory networks | Yes-Poster only | Luise Nagel |
|
HiTSeq COSI |
| 720 | Descendant Cell Fraction: Copy-aware Inference of Clonal Composition and Evolution in Cancer | Yes-Talk and Poster | Mohammed El-Kebir |
Mohammed El-Kebir |
HiTSeq COSI |
| 740 | Fast and accurate bisulfite alignment and methylation calling for mammalian genomes | Yes-Talk and Poster | Jonas Fischer |
Jonas Fischer |
HiTSeq COSI |
| 741 | ImmunoPepper: Generating Neoepitopes from RNA-Seq data | Yes-Talk and Poster | Andre Kahles |
Andre Kahles |
HiTSeq COSI |
| 743 | Deciphering the transcriptional modulation program of trabectedin in sensitive and resistant patient derived xenograft models of myxoid liposarcoma | Yes-Poster only | Laura Mannarino |
|
HiTSeq COSI |
| 746 | Scalable Annotated Genome Sequence Graphs | Yes-Poster only | Harun Mustafa |
|
HiTSeq COSI |
| 749 | Network-based imputation of dropouts in single-cell RNA sequencing data | Yes-Poster only | Ana Carolina Leote |
|
HiTSeq COSI |
| 802 | Hecaton: a machine learning approach to reliably detect copy number variation in plant genomes | Yes-Poster only | Raúl Wijfjes |
|
HiTSeq COSI |
| 872 | High-throughput benchmarking of engineered CRISPR-Cas nucleases | Yes-Poster only | John Hawkins |
|
HiTSeq COSI |
| 894 | SPARSim Single Cell: a count data simulator for scRNA-seq data | Yes-Poster only | Giacomo Baruzzo |
|
HiTSeq COSI |
| 902 | Haplotype Threading: Accurate Polyploid Phasing from Long Reads | Yes-Talk and Poster | Sven Schrinner |
Sven Schrinner |
HiTSeq COSI |
| 909 | An automated pipeline for detecting and annotating mitochondrial variants from paired tumor-normal samples | Yes-Poster only | Catherine Welsh |
|
HiTSeq COSI |
| 923 | Methods to detect large indels and tandem duplication in acute myeloid leukemia using single cell DNA sequencing | Yes-Poster only | Sombeet Sahu |
|
HiTSeq COSI |
| 932 | Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data | Yes-Poster only | Katharina Jahn |
|
HiTSeq COSI |
| 935 | Making RNA-seq analysis results more reproducible | Yes-Poster only | Agata Muszyńska |
|
HiTSeq COSI |
| 947 | Critical Need to Improve the Quality of the Rat Reference Genome | Yes-Poster only | A. Bilge Ozel |
|
HiTSeq COSI |
| 954 | Intra-bin structural variant segmentation for whole-genome sequencing data using U-net | Yes-Poster only | Yao-Zhong Zhang |
|
HiTSeq COSI |
| 957 | Ploidetect: Interpretable detection of tumour purity and aneuploidy from whole-genome sequence data | Yes-Poster only | Luka Culibrk |
|
HiTSeq COSI |
| 971 | Accurate variant calling in unique and repetitive regions of the genome using single-molecule long read sequencing | Yes-Poster only | Timofey Prodanov |
|
HiTSeq COSI |
| 1004 | EPCY: Evaluation of Predictive CapabilitY for ranking biomarker gene candidates | Yes-Poster only | Éric Audemard |
|
HiTSeq COSI |
| 1009 | Identifying and Separating Strain-Unique Bacterial Sequences Using SepSIS | Yes-Poster only | Anthony Kusalik |
|
HiTSeq COSI |
| 1012 | Physlr: Construct a Physical Map from Linked Reads | Yes-Poster only | Shaun Jackman |
|
HiTSeq COSI |
| 1018 | Trans-NanoSim: Characterizing and simulating Oxford Nanopore cDNA/directRNA reads using statistical models | Yes-Poster only | Saber Hafezqorani |
|
HiTSeq COSI |
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| 1025 | Detection and assembly of novel sequence insertions using Linked-Reads | Yes-Talk only | |
Iman Hajirasouliha |
HiTSeq COSI |
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| 1035 | Processing pipeline calibration and confounder removal for accurate and reproducible gene activity profiling at the level of alternative transcripts | Yes-Poster only | Paweł P. Łabaj |
|
HiTSeq COSI |
| 1038 | High-throughput sequencing using combinatorial profiling | Yes-Poster only | Luisa Teasdale |
|
HiTSeq COSI |
| 1041 | The Metagenomic Binning Problem: Probabilistic Model and Fundamental Limits | Yes-Poster only | Grant Greenberg |
|
HiTSeq COSI |
| 1064 | Eliminating transcriptome-wide batch effects results in higher precision in allele-specific expression measurements | Yes-Poster only | Asia Mendelevich |
|
HiTSeq COSI |
| 1066 | Application of CNVnator to analyze copy number alterations in cancer | Yes-Poster only | Alexej Abyzov |
|
HiTSeq COSI |
| 1084 | Complex genetic variants are prevalent causes of disease: Implications for bioinformatics algorithms and benchmarks used in clinical NGS sequencing | Yes-Poster only | Stephen Lincoln |
|
HiTSeq COSI |
| 1087 | GABAC: an arithmetic coding solution for genomic data | Yes-Poster only | Jan Voges |
|
HiTSeq COSI |
| 1096 | Parameter exploration improves accuracy of long-read genome assembly | Yes-Poster only | Anurag Priyam |
|
HiTSeq COSI |
| 1115 | ntHits: a streaming algorithm for identifying repeats in genomics data | Yes-Poster only | Hamid Mohamadi |
|
HiTSeq COSI |
| 1117 | Leveraging known genomic variants to improve detection of variants, especially close-by Indels | Yes-Poster only | Nam Vo |
|
HiTSeq COSI |
| 1124 | Integrative single-cell sequencing to unravel the composition and evolution of Acute Lymphoblastic Leukemia | Yes-Poster only | Llucia Albertí Servera |
|
HiTSeq COSI |
| 1153 | Single-cell RNA analysis deciphers tumor heterogeneity and the immune microenvironment | Yes-Poster only | Anne Bertolini |
|
HiTSeq COSI |
| 1155 | World's first genomenauts: a representative biological recipe for the human species, ready for launch | Yes-Poster only | Inanc Birol |
|
HiTSeq COSI |
| 1158 | Physlr-molecule: de novo barcode-to-molecule deconvolution of linked reads | Yes-Poster only | Amirhossein Afshinfard |
|
HiTSeq COSI |
| 1186 | Development and validation of a bioinformatics pipeline for routine analysis of whole genome sequencing data for typing of Listeria monocytogenes | Yes-Poster only | Qiang Fu |
|
HiTSeq COSI |
| 1206 | GBSathon: Benchmarking reproducibility of Genotyping-By-Sequencing analysis workflows through comparison with SNP chip and pedigree data | Yes-Poster only | Rachael Ashby |
|
HiTSeq COSI |
| 1218 | SmartPhase: accurate and fast phasing of potentially compound heterozygous variant pairs for genetic diagnosis of rare diseases | Yes-Poster only | Tim Jeske |
|
HiTSeq COSI |
| 1254 | Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm | Yes-Poster only | Can Firtina |
|
HiTSeq COSI |
| 1264 | Universal k-mer sets for large-scale genomic analysis | Yes-Poster only | Dan DeBlasio |
|
HiTSeq COSI |
| 1267 | BitMAC: An In-Memory Accelerator for Bitvector-Based Sequence Alignment of Both Short and Long Genomic Reads | Yes-Poster only | Can Firtina |
|
HiTSeq COSI |
| 1276 | Theoretical estimation of the strand cross-correlation in ChIP-Seq data | Yes-Poster only | Hayato Anzawa |
|
HiTSeq COSI |
| 1288 | Analysis of expression of important tooth genes through bulk and single cell rna-seq | Yes-Poster only | Rishi Das Roy |
|
HiTSeq COSI |
| 1296 | Investigating T-Cells differentiation using single cell pseudotime analysis. | Yes-Poster only | Virginie Stanislas |
|
HiTSeq COSI |
| 1309 | Custom substitution matrices for error-prone long reads | Yes-Poster only | Caner Bagci |
|
HiTSeq COSI |
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| 1347 | Transcription Factor Identification in single-cell ATAC and RNAseq | No | |
|
HiTSeq COSI |
| 1349 | Assessing sequencing data for genome assembly | Yes-Poster only | Robert Vaser |
|
HiTSeq COSI |
| 1352 | Gemini: A novel mate-aware algorithm for enhancing indel detection and variant calling accuracy | Yes-Poster only | Gwenn Berry |
|
HiTSeq COSI |
| 1372 | Single-cell RNA-seq analysis combined with live cell imaging on inflammatory response | Yes-Poster only | Hideo Matsuda |
|
HiTSeq COSI |
| 1376 | SneakySnake: a fast and efficient pre-alignment filter for accelerating approximate string matching | Yes-Poster only | Mohammed Alser |
|
HiTSeq COSI |
| 18 | Identifying and predicting novelty in microbiome studies | Yes-Poster only | Xiaoquan Su |
|
MICROBIOME COSI |
| 21 | Whole genome metagenomic analysis comparing Ethiopian indigenous chicken cecum from two different environment | Yes-Poster only | Jong-Eun Park |
|
MICROBIOME COSI |
| 31 | Characterization of Bacterial Populations observed in breeding sites water and in Anopheles coluzzii and Anopheles gambiae larvae of a malaria endemic area in Mali. | Yes-Poster only | Assetou Dionegue Diarra |
|
MICROBIOME COSI |
| 38 | Phylogenetic Tree-based Microbiome Association Test | Yes-Talk and Poster | Kangjin Kim |
Kangjin Kim |
MICROBIOME COSI |
| 79 | Consistent alterations of human fecal microbes after transplanted to germ-free mice | Yes-Poster only | Weihua Chen |
|
MICROBIOME COSI |
| 88 | Computational pipeline for Microbiota composition prediction: Top Performer of The sbv IMPROVER Microbiomics Challenge | Yes-Poster only | Vijay Kumar Narsapuram |
|
MICROBIOME COSI |
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| 133 | Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences | Yes-Talk only | |
Ziye Wang |
MICROBIOME COSI |
| 148 | Unraveling the Role of Microbial Dark Matter in Extreme Environmental Networks | Yes-Talk and Poster | Tatyana Zamkovaya |
Tatyana Zamkovaya |
MICROBIOME COSI |
| 162 | Learning accurate representations of microbe-metabolite interactions | Yes-Talk only | |
Richard Bonneau |
MICROBIOME COSI |
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| 182 | SolidBin: Improving Metagenome Binning with Semi-supervised Normalized Cut | Yes-Poster only | Ziye Wang |
|
MICROBIOME COSI |
| 214 | Benchmarking metagenomic taxonomy profilers – lessons learned from the crowdsourced sbv IMPROVER Microbiomics Challenge | Yes-Poster only | Carine Poussin |
|
MICROBIOME COSI |
| 216 | Massive-scale structure and function predictions of human gut microbiome proteins for metagenomic applications | Yes-Talk and Poster | Tomasz Kosciolek |
Tomasz Kosciolek |
MICROBIOME COSI |
| 226 | DeepBGC: Applying Deep Learning Algorithms to Biosynthetic Gene Cluster Identification | Yes-Talk and Poster | David Prihoda |
Christopher Woelk |
MICROBIOME COSI |
| 262 | Are metagenomic data sufficiently informative to robustly predict inflammatory bowel disease status? | Yes-Poster only | Lusine Khachatryan |
|
MICROBIOME COSI |
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| 273 | Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. | Yes-Talk only | |
Johannes Soeding |
MICROBIOME COSI |
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| 290 | Unearthing hidden patterns in the horse gut microbiome using a machine learning approach. | Yes-Poster only | Jose Daniel Chazi Capelo |
|
MICROBIOME COSI |
| 324 | MiCroM: A Comprehensive Pipeline for Gene Amplicon and Metagenomic Data Analysis | Yes-Poster only | Richa Bharti |
|
MICROBIOME COSI |
| 337 | PLNmodels: a collection of models for multivariate analysis in microbial ecology | Yes-Poster only | Mahendra Mariadassou |
|
MICROBIOME COSI |
| 350 | Development of meta-transcriptome analysis method and its application to meta-transcriptome map of common marmoset | Yes-Poster only | Mika Uehara |
|
MICROBIOME COSI |
| 355 | Meta-analysis for metagenome taxonomy analysis | Yes-Poster only | Mikang Sim |
|
MICROBIOME COSI |
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| 371 | Assessing taxonomic metagenome profilers with OPAL | Yes-Talk only | |
Fernando Meyer |
MICROBIOME COSI |
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| 374 | Microbial abundance, activity, and population genomic profiling with mOTUs2 | Yes-Poster only | Alessio Milanese |
|
MICROBIOME COSI |
| 412 | An evaluation of binning methods to recover human gut microbial pan-genomes from non-redundant reference gene catalog | Yes-Poster only | Marianne Borderes |
|
MICROBIOME COSI |
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| 424 | MetaRefSGB: a scalable framework to organize genomes from metagenomes and their annotations into species-level genome bins | Yes-Talk only | |
Fabio Cumbo |
MICROBIOME COSI |
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| 439 | InterPro, EggNOG, KEGG and SEED - how do they compare? | Yes-Poster only | Monika Balvočiūtė |
|
MICROBIOME COSI |
| 497 | Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community. | Yes-Talk and Poster | Wataru Iwasaki |
Wataru Iwasaki |
MICROBIOME COSI |
| 508 | Insight into the porcine gut microbiome from metagenomic time series data from 869 samples in 126 hosts | Yes-Poster only | Daniela Gaio |
|
MICROBIOME COSI |
| 532 | Characterization of human and sewage water microbiomes during summer in a low-income location in Lima-Peru | Yes-Poster only | Camila Marlen Castillo-Vilcahuaman |
|
MICROBIOME COSI |
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| 539 | Blood and faecal omic joint analysis via KEGG Orthology: an approach to investigate host-microbiome synergistic activities | No | |
|
MICROBIOME COSI |
| 583 | Strain-Level Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis | Yes-Poster only | Marija Dmitrijeva |
|
MICROBIOME COSI |
| 633 | MetaEuk – sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics | Yes-Talk and Poster | Eli Levy Karin |
Eli Levy Karin |
MICROBIOME COSI |
| 646 | Cascabel: a flexible amplicon sequence data analysis pipeline for microbial profiling | Yes-Poster only | Julia C Engelmann |
|
MICROBIOME COSI |
| 650 | Assessing software for viral population genomics | Yes-Poster only | Adrian Fritz |
|
MICROBIOME COSI |
| 667 | MetagenApp - The city in the palm of your hand | Yes-Poster only | Alexandra B. Graf |
|
MICROBIOME COSI |
| 673 | Efficient mobile taxonomic classification for nanopore data using a multilevel approach | Yes-Talk and Poster | Caner Bagci |
Benjamin Albrecht |
MICROBIOME COSI |
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| 697 | Unravelling microbial interactions in the gut microbiome associated with antibiotic recovery | No | |
|
MICROBIOME COSI |
| 730 | The genomic and functional diversity of swiss cheese starter communities | Yes-Poster only | Vincent Somerville |
|
MICROBIOME COSI |
| 752 | Contaminant Detection and Filtering for Metagenomic Datasets of Low Biomass | Yes-Poster only | Xi Chen |
|
MICROBIOME COSI |
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| 765 | The gut resistome of remote human groups | No | |
|
MICROBIOME COSI |
| 787 | Adapting Flint for Calculating Bacterial Replication Rates in Microbiomes | Yes-Poster only | Vitalii Stebliankin |
|
MICROBIOME COSI |
| 828 | Inferring microbial co-occurrence networks from 16S data: A systematic evaluation | Yes-Talk and Poster | Dileep Kishore |
Dileep Kishore |
MICROBIOME COSI |
| 841 | AnnotatIEM: A Novel algorithm for Species level annotation of 16S gene based microbial OTUs | Yes-Poster only | Madhumita Bhattacharyya |
|
MICROBIOME COSI |
| 845 | PhyloMagnet: Fast and accurate profiling of short-read meta-omics data using gene-centric phylogenetics | Yes-Poster only | Max Emil Schön |
|
MICROBIOME COSI |
| 854 | Assessing mediating effects of high-dimensional microbiome measurements in dietary intervention studies | Yes-Poster only | Nadine Binder |
|
MICROBIOME COSI |
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| 950 | Bacterial lineage identification from multi-strain sequencing data | Yes-Talk only | |
Tommi Mäklin |
MICROBIOME COSI |
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| 1111 | Abundance and diversity of resistomes differ between healthy human oral cavities and gut | Yes-Poster only | Victoria Carr |
|
MICROBIOME COSI |
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| 1112 | MicroPheno: a manually curated database for identifying and prioritizing microbes associated with human disease phenotypes | No | |
|
MICROBIOME COSI |
| 1160 | phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects | Yes-Poster only | Schuyler Smith |
|
MICROBIOME COSI |
| 1230 | DIFFERENTIAL EFFECTS OF FISH OIL AND OLZ ON GUT MICROBIOTA IN DIET-INDUCED OBESE MICE. | Yes-Poster only | Mostafa Hamza |
|
MICROBIOME COSI |
| 1231 | Harmonising Public Resources to Fight Antimicrobial Resistance | Yes-Poster only | Inês Ferreira |
|
MICROBIOME COSI |
| 1263 | Distribution of defense systems in prokaryotes of the World Ocean | Yes-Poster only | Anna Ershova |
|
MICROBIOME COSI |
| 1280 | DiTaxa: Nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection | Yes-Poster only | Ehsaneddin Asgari |
|
MICROBIOME COSI |
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| 1313 | Systems Modelling of the Skin Microbiome | No | |
|
MICROBIOME COSI |
| 1392 | A study of gut microbial variations associated with phenotypic metadata in a healthy Japanese population | Yes-Poster only | Jonguk Park |
|
MICROBIOME COSI |
| 37 | WideDTA: prediction of drug-target binding affinity | Yes-Talk and Poster | Hakime Öztürk |
Hakime Öztürk |
MLCSB COSI |
| 40 | A chemical language based approach for the prediction of protein - ligand binding affinity | Yes-Poster only | Hakime Öztürk |
|
MLCSB COSI |
| 47 | Computational Inference of Gene Regulatory Networks | Yes-Poster only | Claudia Skok Gibbs |
|
MLCSB COSI |
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| 50 | RLFimpute: Using reinforcement learning framework for imputation of scRNA-seq data | Yes-Talk only | |
Xiaobo Zhou |
MLCSB COSI |
| 51 | A principal curve approach to inferring 3D chromatin architecture | Yes-Talk only | |
Mark Segal |
MLCSB COSI |
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| 116 | DeepMito: predicting internal mitochondrial localization of proteins using convolutional neural networks | Yes-Poster only | Castrense Savojardo |
|
MLCSB COSI |
| 134 | Distributed privacy-aware data normalization | Yes-Poster only | Anne Hartebrodt |
|
MLCSB COSI |
| 138 | Learning cell type deconvolution from single cell RNA-seq data | Yes-Poster only | Kevin Menden |
|
MLCSB COSI |
| 140 | Using rich curated gene expression data to train whole-blood computational deconvolution models | Yes-Poster only | Alain Sewer |
|
MLCSB COSI |
| 169 | Machine learning in personalised prognosis prediction of lung cancer | Yes-Poster only | Yang Yang |
|
MLCSB COSI |
| 180 | Applying deep neural networks with feature extraction to target-gene expression prediction from landmark genes | Yes-Talk and Poster | Da-Bin Lee |
Da-Bin Lee |
MLCSB COSI |
| 181 | Identification of core gene expression modules according to cancer stage | Yes-Poster only | Man-Sun Kim |
|
MLCSB COSI |
| 201 | Improving drug-target interaction prediction by fusing ligand-based and target-based information. | Yes-Poster only | Daniele Parisi |
|
MLCSB COSI |
| 206 | Genome-wide investigation of gene-cancer associations using machine learning on biomedical big data for the prediction of novel therapeutic targets | Yes-Poster only | Adrián Bazaga |
|
MLCSB COSI |
| 217 | Studying single plant responses to natural perturbations | Yes-Poster only | Sam De Meyer |
|
MLCSB COSI |
| 232 | Deep neural networks predict drug-induced histopathology based on gene expression | Yes-Talk and Poster | Jitao David Zhang |
Tao Fang |
MLCSB COSI |
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| 243 | A multitask multiple kernel learning formulation for discriminating early- and late-stage cancers | No | |
|
MLCSB COSI |
| 245 | Drug-target interaction prediction using multi-label classification with label partitioning | Yes-Poster only | Konstantinos Pliakos |
|
MLCSB COSI |
| 258 | Machine Learning Prediction of Malaria Vaccine Efficacy based on Antibody Profiles | Yes-Poster only | Schmidt |
|
MLCSB COSI |
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| 259 | Pathway/gene set-based survival analysis using multiple kernel learning | No | |
|
MLCSB COSI |
| 267 | CNN-Peaks: ChIP-seq peak detector using convolution neural networks | Yes-Talk and Poster | Dongpin Oh |
Dongpin Oh |
MLCSB COSI |
| 339 | Multi-omics network analysis reveals stable age-associated subgroups in human epidermal tissue | Yes-Poster only | Nicholas Holzscheck |
|
MLCSB COSI |
| 343 | Using Convolution Neuron Network to Identify Breakpoints in a Neuron Image | Yes-Poster only | Ting-Yuan Wang |
|
MLCSB COSI |
| 346 | Transcriptomic analysis of colorectal tumoral and normal tissues: comparison of TCGA and GTEx RNAseq data | Yes-Poster only | Carolina Peixoto |
|
MLCSB COSI |
| 348 | A full workflow for machine learning techniques in integrative multiomics studies as part of the COVAIN toolbox | Yes-Poster only | Xiaoliang Sun |
|
MLCSB COSI |
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| 351 | moonPRED: A Deep Neural Network Based Tool to Predict Protein Moonlighting | No | |
|
MLCSB COSI |
| 359 | An adaptive graph to fit trajectories | Yes-Poster only | Helena Todorov |
|
MLCSB COSI |
| 379 | Causal Gene Suggestion For Cancer Types Using Variant Calls | Yes-Poster only | Nuriye Özlem Özcan Şimşek |
|
MLCSB COSI |
| 380 | Pairing gene expression and spatial location to learn whole brain patterns of transcription | Yes-Poster only | Shaina Lu |
|
MLCSB COSI |
| 382 | Data Mining of Alcoholic Liver Disease Progression from Health Registry Data | Yes-Talk and Poster | Dhouha Grissa |
Dhouha Grissa |
MLCSB COSI |
| 401 | Forecasting yield penalties in field trials using machine learning models | Yes-Poster only | Girish Srinivas |
|
MLCSB COSI |
| 430 | Data-Driven Prediction of Tissue Regeneration around Bone Implants | Yes-Poster only | An-Cheng Yang |
|
MLCSB COSI |
| 433 | Machine learning-based modeling of radiation-associated contralateral breast cancer in the WECARE Study | Yes-Poster only | Jung Hun Oh |
|
MLCSB COSI |
| 472 | web-rMKL: A web server for dimensionality reduction and sample clustering of multi-view data based on unsupervised multiple kernel learning | Yes-Poster only | Nicolas Kersten |
|
MLCSB COSI |
| 483 | Exploration of gene cluster with correlated expression pattern to cilium organization-related genes in non-small cell lung cancer cell | Yes-Poster only | Kohei Misu |
|
MLCSB COSI |
| 494 | Highly accurate meta-analysis-based classifier for acquired anticancer drug resistance | Yes-Poster only | Sung Young Kim |
|
MLCSB COSI |
| 540 | DIAGNOSTIC META–ANALYSIS FOR DIFFERENTIATION OF VIRAL AND BACTERIAL BIOMARKERS | Yes-Poster only | Ashleigh Myall |
|
MLCSB COSI |
| 541 | Deconvolution of autoencoders to learn biological modules from single cell mRNA sequencing data | Yes-Talk and Poster | Savvas Kinalis |
Savvas Kinalis |
MLCSB COSI |
| 544 | Improved interpretability of multiple kernel learning for the discovery of integrative cancer subtypes | Yes-Poster only | Nora K. Speicher |
|
MLCSB COSI |
| 559 | Clonesig: Joint Inference of intra-tumor heterogeneity and signature deconvolution in tumor bulk sequencing data | Yes-Talk and Poster | Judith Abécassis |
Judith Abécassis |
MLCSB COSI |
| 595 | CellGen: A mixture of expert autoencoder to cluster single cell data | Yes-Talk and Poster | Andreas Kopf |
Andreas Kopf |
MLCSB COSI |
| 597 | Analysis of kinetic aspects of protein aggregation using computational approaches | Yes-Poster only | Puneet Rawat |
|
MLCSB COSI |
| 607 | Error Analysis of Atom Mapping for Chemical Reaction Learning | Yes-Poster only | Adam Arany |
|
MLCSB COSI |
| 610 | Interpretable machine-learning framework to bridge the structural dynamic space with functional activity in proteins | Yes-Poster only | Sunaina Banerjee |
|
MLCSB COSI |
| 618 | Interpretability for computational biology | Yes-Talk and Poster | An-Phi Nguyen |
An-Phi Nguyen |
MLCSB COSI |
| 626 | Deep Learning genetic and epigenetic splicing code | Yes-Poster only | Xiaobo Zhou |
|
MLCSB COSI |
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| 627 | Structural Analysis and Prediction of the Effects of Missense Mutations on Protein-Protein Interactions | No | |
|
MLCSB COSI |
| 653 | Bijective Encoding of Proteins In a Scalable Distributed Deep Learning Framework | Yes-Talk and Poster | Angela Lopez-Del Rio |
Angela Lopez-Del Rio |
MLCSB COSI |
| 689 | Classification of phage structural proteins using machine learning (ML) | Yes-Poster only | Adrian Cantu |
|
MLCSB COSI |
| 701 | Learning Protein Constitutive Motifs from Sequence Data | Yes-Poster only | Jérôme Tubiana |
|
MLCSB COSI |
| 753 | An approach on improving integrative clustering of cancer subtypes by regularized multiple kernel learning with dimensionality reduction | Yes-Talk and Poster | Sven Bizu |
Sven Bizu |
MLCSB COSI |
| 763 | Modeling and prediction of genes associated with rare Mendelian phenotypes using an end-to-end deep learning approach | Yes-Talk and Poster | Denise Duma |
Denise Duma |
MLCSB COSI |
| 776 | Learning the language of life | Yes-Talk and Poster | Jose Juan Almagro Armenteros |
Jose Juan Almagro Armenteros |
MLCSB COSI |
| 782 | A multi-class decision tree for identifying cell cluster marker genes in single-cell RNAseq analysis | Yes-Poster only | Ahmed Youssef |
|
MLCSB COSI |
| 796 | A deep learning system can accurately classify primary and metastatic cancers based on patterns of passenger mutations | Yes-Talk and Poster | Gurnit Atwal |
Gurnit Atwal |
MLCSB COSI |
| 797 | Cell-type identification in single-cell RNA sequencing based on gene interaction networks | Yes-Poster only | Elyas Heidari |
|
MLCSB COSI |
| 822 | Interpretation of deep learning models in genomics: splicing codes as a case study | Yes-Talk and Poster | Anupama Jha |
Anupama Jha |
MLCSB COSI |
| 829 | Bayesian Correlation is a robust similarity measure for single cell RNA-seq data | Yes-Poster only | Daniel Sanchez-Taltavull |
|
MLCSB COSI |
| 859 | Extracing biological connections from single cell RNA-Seq data with deep Boltzmann Machines using conditional sampling | Yes-Poster only | Moritz Hess |
|
MLCSB COSI |
| 866 | Towards Explainable Anticancer Compound Sensitivity Prediction via Multimodal Attention-based Convolutional Encoders | Yes-Talk and Poster | Matteo Manica |
Matteo Manica |
MLCSB COSI |
| 867 | DeePaC: Predicting pathogenic potential of novel DNA with reverse-complement neural networks | Yes-Poster only | Jakub M. Bartoszewicz |
|
MLCSB COSI |
| 877 | Multi-group factor analysis framework for structured single-cell omics data | Yes-Talk and Poster | Danila Bredikhin |
Danila Bredikhin |
MLCSB COSI |
| 904 | A machine-learning based method for the refinement of variants derived from FFPE DNA sequencing data | Yes-Poster only | Maitena Tellaetxe-Abete |
|
MLCSB COSI |
| 920 | Machine Learning Models to Predict cis-Regulatory Elements from Clinical ATAC-seq Samples | Yes-Poster only | Asa Thibodeau |
|
MLCSB COSI |
| 924 | Benchmark comparison of 52 classification algorithms on 50 gene-expression datasets | Yes-Poster only | Stephen Piccolo |
|
MLCSB COSI |
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| 926 | Pan-cancer analysis identifies novel driver genes using machine learning | No | |
|
MLCSB COSI |
| 938 | Learning sequence embeddings for antimicrobial peptide classification | Yes-Poster only | Figali Taho |
|
MLCSB COSI |
| 940 | Detecting doublets in Single Cell DNA-Sequencing using Deep Learning | Yes-Poster only | Manimozhi Manivannan |
|
MLCSB COSI |
| 948 | Deep and Shallow Chemogenomic Modelling for Compound-Target Binding Affinity Prediction Using Pairwise Input Neural Networks & Random Forests | Yes-Poster only | Tunca Dogan |
|
MLCSB COSI |
| 951 | Deep Convolutional Neural Network reveals chain pairing preferences in BCRs | Yes-Poster only | Franca Fraternali |
|
MLCSB COSI |
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| 955 | Comparison of the Effect of Dimensionality Reduction Techniques on the Clustering Tendency of Single-Cell RNA-Seq Data | No | |
|
MLCSB COSI |
| 956 | Error Correction in single-cell DNA sequencing: Finding that rare allele for MRD clone | Yes-Poster only | Sombeet Sahu |
|
MLCSB COSI |
| 973 | Methyl2Activity: A deep learning based model to predict epigenetic and transcriptional activities from DNA methylation | Yes-Poster only | Justin Williams |
|
MLCSB COSI |
| 978 | DeepKinZero: Zero-Shot Learning for Predicting Kinase-Phosphosite Associations | Yes-Poster only | Oznur Tastan |
|
MLCSB COSI |
| 982 | Using machine learning to optimize assays for single cell targeted DNA sequencing | Yes-Poster only | Manimozhi Manivannan |
|
MLCSB COSI |
| 984 | FastQuality – A machine learning application to assess the quality of early stage sequencing data (fastq files) | Yes-Poster only | Steffen Albrecht |
|
MLCSB COSI |
| 988 | AMPlify: A Deep Learning Model for Antimicrobial Peptide Prediction | Yes-Poster only | Chenkai Li |
|
MLCSB COSI |
| 1000 | DrugCell: A visible neural network to guide precision medicine | Yes-Talk and Poster | Jisoo Park |
Jisoo Park |
MLCSB COSI |
| 1008 | Deciphering the relationship between epigenetic marks and Transcription Factor Binding | Yes-Poster only | Sebastián Contreras-Riquelme |
|
MLCSB COSI |
| 1024 | Optimizing Gene Expression Prediction in African Ancestry Populations | Yes-Poster only | Paul Okoro |
|
MLCSB COSI |
| 1034 | A pitfall for machine learning methods aiming to predict across cell types | Yes-Talk and Poster | Jacob Schreiber |
Jacob Schreiber |
MLCSB COSI |
| 1045 | Using Semi-Supervised Machine Learning to Predict Carcinogenicity from Gene Expression | Yes-Poster only | Rebecca Panitch |
|
MLCSB COSI |
| 1050 | Identifying glycan motifs using a novel tree representation that considers terminal connections | Yes-Talk and Poster | Andrew Guy |
Andrew Guy |
MLCSB COSI |
| 1053 | Fused Lasso matrix factorization for HiC data | Yes-Poster only | Maria Chikina |
|
MLCSB COSI |
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| 1058 | Robust identification of significant time intervals of omics features in longitudinal differential studies | No | |
|
MLCSB COSI |
| 1065 | Targeted Genetic Optimization of TF Binding with Neural Editing Architectures | Yes-Talk and Poster | Anvita Gupta |
Anvita Gupta |
MLCSB COSI |
| 1067 | Generative classification of cell types in scRNA-seq data | Yes-Talk and Poster | Murat Can Cobanoglu |
Murat Can Cobanoglu |
MLCSB COSI |
| 1082 | Single Cell Gene Regulatory Network Inference with Inter-cluster Similarity Constraint | Yes-Poster only | Idoia Ochoa |
|
MLCSB COSI |
| 1091 | All Terrain Graph-Learner - CPC: Causal Model Discovery for Missing Not at Random Data | Yes-Poster only | Jennifer Williams |
|
MLCSB COSI |
| 1092 | Towards accurate identification of Biosynthetic Gene Clusters in fungi | Yes-Poster only | Hayda Almeida |
|
MLCSB COSI |
| 1093 | Systematic modeling of pan-cancer drug responses using Bayesian multi-source regression | Yes-Poster only | Mehreen Ali |
|
MLCSB COSI |
| 1101 | De Novo Protein Design of Novel Folds using Guided Conditional Generative Adversarial Networks (gcGAN) | Yes-Poster only | Yang Shen |
|
MLCSB COSI |
| 1104 | Comparative machine learning framework for efficient prediction of host-pathogen protein-protein interactions using sequence-based features | Yes-Talk and Poster | Rakesh Kaundal |
Rakesh Kaundal |
MLCSB COSI |
| 1161 | Ensemble learning model identifies pan-cancer hallmark genes in TNFA signaling pathway | Yes-Poster only | Yin-Yuan Su |
|
MLCSB COSI |
| 1183 | Interpreting Random Forests with Ensemble Networks | Yes-Poster only | Yue Zhang |
|
MLCSB COSI |
| 1207 | Missing Data Imputation for Biological Classification Problems | Yes-Poster only | Arkopal Choudhury |
|
MLCSB COSI |
| 1215 | Modeling Disease Progression in Diabetic Retinopathy | Yes-Poster only | Kolja Becker |
|
MLCSB COSI |
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| 1225 | Automatic epileptic seizure detection via Attention-based CNN-BiRNN | No | |
|
MLCSB COSI |
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| 1226 | Edge-boosted U-Net for 2D Medical Image Segmentation | No | |
|
MLCSB COSI |
| 1227 | Identification of hormone binding proteins based on machine learning methods | Yes-Poster only | Hua Tang |
|
MLCSB COSI |
| 1241 | Predicting virus host interactions with machine learning: a comparison of feature representations | Yes-Poster only | Francesca Young |
|
MLCSB COSI |
| 1242 | Chemogenomic analysis of the druggable kinome and its application to repositioning and lead identification studies | Yes-Poster only | Balaguru Ravikumar |
|
MLCSB COSI |
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| 1246 | Lipidome improves predictive ability of subclinical atherosclerosis over traditional risk factors: The Cardiovascular Risk in Young Finns Study | No | |
|
MLCSB COSI |
| 1247 | Machine learning based classification of STARR-seq reveals sequence determinants of human enhancer function | Yes-Poster only | Tuomo Hartonen |
|
MLCSB COSI |
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| 1251 | Lipidome-wide discovery of lipid modules associated with markers of subclinical osteoporosis and atherosclerosis: The Cardiovascular Risk in Young Finns Study | No | |
|
MLCSB COSI |
| 1274 | Application of Machine Learning in Determination of Diffuse Large B Cell Lymphoma Cell of Origin from Plasma Samples | Yes-Poster only | Ehsan Tabari |
|
MLCSB COSI |
| 1281 | Cross-species cell type annotation of single cell RNA-Seq data | Yes-Poster only | Minja Zorc |
|
MLCSB COSI |
| 1306 | Variable Depth Forest: A More Random Random-Forest for heterogeneous disease genetics | Yes-Poster only | Natalie Twine |
|
MLCSB COSI |
| 1307 | GT-Scan2 and VARSCOT: Tools for personalized CRISPR-Cas9 target design | Yes-Poster only | Natalie Twine |
|
MLCSB COSI |
| 1326 | Exploiting machine learning techniques for genes signature discovery from single cell data | Yes-Poster only | Greta Romano |
|
MLCSB COSI |
| 1338 | Integrative network analysis of miRNAs and mRNAs in epileptogenesis | Yes-Poster only | Laleh Kazemzadeh |
|
MLCSB COSI |
| 1358 | Improved Pan-Specific MHC II Peptide Interaction Model Through NNalign_MA & Proteolytic Signals | Yes-Poster only | Birkir Reynisson |
|
MLCSB COSI |
| 20 | Co-regulatory Network of Oncosuppressor miRNAs and Transcription Factors for Pathology of Human Hepatic Cancer Stem Cells (HCSC) | Yes-Poster only | Rania Hassan |
|
NetBio COSI |
| 34 | Growth-coupled overproduction is theoretically possible for most metabolites in Saccharomyces cerevisiae under anaerobic condition | Yes-Poster only | Takeyuki Tamura |
|
NetBio COSI |
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| 53 | Single-sample network modeling identifies regulation of PD1 signaling associated with glioblastoma survival | Yes-Talk only | |
Marieke Kuijjer |
NetBio COSI |
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| 56 | Modeling miRNA regulatory networks using a message passing approach | No | |
|
NetBio COSI |
| 76 | BiGAnts: network-constrained biclustering of patients and multi-omics data | Yes-Poster only | Olga Lazareva |
|
NetBio COSI |
| 84 | GEDLIB: A C++ Library for Graph Edit Distance Computation | Yes-Poster only | David B. Blumenthal |
|
NetBio COSI |
| 139 | Transcriptome-wide profiling of hepatocytes and liver sinusoidal endothelial cells | Yes-Poster only | Jonathan De Smedt |
|
NetBio COSI |
| 156 | Systems Biology Approach for Natural Compounds Mode of Action Discovery | Yes-Poster only | Dimitris Messinis |
|
NetBio COSI |
| 165 | scNetViz: A Cytoscape App for the Network Analysis and Visualization of scRNA-Seq Data | Yes-Talk and Poster | John Morris |
John Morris |
NetBio COSI |
| 196 | The DisGeNET Cytoscape App: network analysis for disease genomics | Yes-Poster only | Janet Piñero |
|
NetBio COSI |
| 199 | Towards a data-integrated cell | Yes-Talk and Poster | Noel Malod-Dognin |
Noel Malod-Dognin |
NetBio COSI |
| 202 | Omics Visualizer: a Cytoscape App to visualize omics data | Yes-Talk and Poster | Marc Legeay |
Marc Legeay |
NetBio COSI |
| 204 | Machine intelligence driven design of Omics combinatorial biomarkers for Major Depressive Disorder | Yes-Poster only | Claudio Duran |
|
NetBio COSI |
| 222 | Community challenge assesses network module identification methods across complex diseases | Yes-Talk and Poster | Daniel Marbach |
Daniel Marbach |
NetBio COSI |
| 291 | The MultiOmics Explainer: Explaining Omics Results in the Context of a Pathway/Genome Database | Yes-Poster only | Peter Karp |
|
NetBio COSI |
| 293 | An integrative network landscape of 5 comorbid diseases uncovers shared network traits and commonly dysregulated pathways | Yes-Poster only | Sara Brin Rosenthal |
|
NetBio COSI |
| 296 | GS-rank helps generate striking new hypothesis: an Alzheimer's disease case study | Yes-Poster only | Jake Chen |
|
NetBio COSI |
| 315 | RWRMTN: a tool for predicting disease-associated microRNAs on a microRNA-target gene network | Yes-Poster only | Duc-Hau Le |
|
NetBio COSI |
| 319 | Prediction of combinational drug effect with knowledge-based machine learning | Yes-Poster only | Mijin Kwon |
|
NetBio COSI |
| 322 | Personalized PageRank on Interaction Networks | Yes-Poster only | Mate Fellner |
|
NetBio COSI |
| 326 | Robust structure measures of metabolic networks that predict prokaryotic environmental variables in the context of obesity and metabolic diseases | Yes-Poster only | Adèle Weber Zendrera |
|
NetBio COSI |
| 334 | Prediction of drug combination effects using drug-gene relations | Yes-Poster only | Taekeon Lee |
|
NetBio COSI |
| 354 | Identification of Global Regulators Determining Cell Fate | Yes-Poster only | Maryam Nazarieh |
|
NetBio COSI |
| 357 | Unveiling new disease, pathway, and gene associations via multi-scale neural networks | Yes-Poster only | Thomas Gaudelet |
|
NetBio COSI |
| 390 | Functional module detection through integration of single-cell RNA sequencing data with protein interaction networks | Yes-Poster only | Florian Klimm |
|
NetBio COSI |
| 515 | Weighted Tanimoto scoring for improved functional clustering of proteome data | Yes-Poster only | Seungeun Ryoo |
|
NetBio COSI |
| 551 | Network and Pathway Analysis of Toxicogenomics Data | Yes-Poster only | Gal Barel |
|
NetBio COSI |
| 557 | Multi-Objective Genetic Algorithm to Find Active Modules in Biological Networks | Yes-Poster only | Elva María Novoa del Toro |
|
NetBio COSI |
| 565 | GUILDify v2.0: A tool to identify molecular networks underlying human diseases, their comorbidities and their druggable targets | Yes-Talk and Poster | Joaquim Aguirre-Plans |
Joaquim Aguirre-Plans |
NetBio COSI |
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| 567 | Integrative network-based approach identifies gene communities in COPD | Yes-Talk only | |
Roberta Marino |
NetBio COSI |
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| 569 | IAMBEE: a web-service for the identification of adaptive pathways from parallel evolved clonal populations | Yes-Poster only | Camilo Perez-Romero |
|
NetBio COSI |
| 591 | stringApp: Retrieval, analysis, and visualization of STRING networks in Cytoscape | Yes-Poster only | Nadezhda T. Doncheva |
|
NetBio COSI |
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| 619 | A combinatorial grammar underlies protein-protein interactions in eukaryotes | No | |
|
NetBio COSI |
| 639 | Measuring rank robustness in scored protein interaction networks | Yes-Poster only | Lyuba Bozhilova |
|
NetBio COSI |
| 644 | MEXCOWalk: Mutual Exclusion and Coverage Based Random Walk to Identify Cancer Modules | Yes-Poster only | Hilal Kazan |
|
NetBio COSI |
| 668 | Complex Portal – home for functionally annotated macromolecular complexes | Yes-Poster only | Kalpana Panneerselvam |
|
NetBio COSI |
| 672 | Gene co-expression network for the study of Rhizobium leguminosarum | Yes-Poster only | Javier Pardo-Díaz |
|
NetBio COSI |
| 688 | TargetScore: A data-driven network biology algorithm for overcoming adaptive resistance to cancer therapy | Yes-Poster only | Anil Korkut |
|
NetBio COSI |
| 728 | Disentangling environmental effects in microbial association networks | Yes-Poster only | Ina Maria Deutschmann |
|
NetBio COSI |
| 732 | Automated generation of context specific Gene Regulatory Networks from epigenetic and genomic data | Yes-Poster only | Leandro Murgas |
|
NetBio COSI |
| 790 | Modeling the Tumor Specific Network Rewiring by Integrating Alternative Splicing Events with Structural Interactome | Yes-Poster only | Habibe Cansu Demirel |
|
NetBio COSI |
| 807 | Striking the allelic imbalance in dilated cardiomyopathy through a network-based approach | Yes-Poster only | Michiel Adriaens |
|
NetBio COSI |
| 809 | Investigating the various roles of inflammation in disease: A network-biology approach | Yes-Poster only | Martina Kutmon |
|
NetBio COSI |
| 824 | Implementing a multilayer model to create, modify and visualize pathway data | Yes-Poster only | Zaynab Hammoud |
|
NetBio COSI |
| 827 | INTEGRATIVE NETWORK MODELLING OF THE DASATINIB TREATMENT IN GLIOBLASTOMA STEM CELLS | Yes-Poster only | Gökçe Senger |
|
NetBio COSI |
| 831 | diseaseQUEST: An integrative tissue network approach to identify and test novel human disease genes | Yes-Poster only | Vicky Yao |
|
NetBio COSI |
| 882 | Moonlight: a tool to interpret pathways to discover cancer driver genes | Yes-Poster only | Antonio Colaprico |
|
NetBio COSI |
| 884 | PIMKL: Pathway Induced Multiple Kernel Learning | Yes-Talk and Poster | Joris Cadow |
Joris Cadow |
NetBio COSI |
| 899 | Next-generation biological network alignment | Yes-Talk and Poster | Shawn Gu |
Shawn Gu |
NetBio COSI |
| 905 | Clustering massive protein functional similarity networks: a scalable approach | Yes-Poster only | Yannick Mahlich |
|
NetBio COSI |
| 934 | A network-based workflow to identify drug target networks from gene expression data | Yes-Poster only | Sara Gosline |
|
NetBio COSI |
| 961 | DiseaseScope: Automatic Construction and Interpretation of Hierarchical Disease Models | Yes-Talk and Poster | Samson Fong |
Samson Fong |
NetBio COSI |
| 983 | Consensus gene co-expression networks allow unsupervised cell type deconvolution of tissue transcriptomes | Yes-Poster only | Cesar A. Prada-Medina |
|
NetBio COSI |
| 985 | Evolution of resilience in protein interactomes across the tree of life | Yes-Talk and Poster | Marinka Zitnik |
Marinka Zitnik |
NetBio COSI |
| 992 | The RCX data model: An R adaptation of the Cytoscape exchange format for biological networks | Yes-Poster only | Florian Auer |
|
NetBio COSI |
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| 999 | A multi-scale map of cell systems explains mutational heterogeneity in cancer | No | |
|
NetBio COSI |
| 1010 | Candidate genes discovery through augmented gene co-expression analysis - a skin aging application case | Yes-Poster only | Gwenaëlle Lemoine |
|
NetBio COSI |
| 1022 | A network-driven approach to identifying mechanisms of contraction-induced muscle adaptation as a function of age | Yes-Poster only | Craig Willis |
|
NetBio COSI |
| 1026 | Identifying Drug Sensitivity Subnetworks with NETPHIX | Yes-Talk and Poster | Yoo-Ah Kim |
Yoo-Ah Kim |
NetBio COSI |
| 1027 | Pathway centrality in protein interaction networks identifies putative functional mediating pathways in pulmonary disease | Yes-Poster only | Jisoo Park |
|
NetBio COSI |
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| 1036 | Machine Learning and Computer Vision Approaches for Phenotypic Profiling in Yeast | No | |
|
NetBio COSI |
| 1054 | Integrative Network-based Clustering of Multiomics Data for Subtype Analysis of Breast and Lung Cancer | Yes-Poster only | Maryam Pouryahya |
|
NetBio COSI |
| 1057 | Coexpression and regulation: the expectation, the observation and the reality | Yes-Talk and Poster | Marjan Farahbod |
Marjan Farahbod |
NetBio COSI |
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| 1069 | Identification of novel malaria related proteins using random walk with restart method | No | |
|
NetBio COSI |
| 1099 | PredHPI: an integrated framework for the detection and visualization of host-pathogen interactions using sequence-based methods | Yes-Poster only | Rakesh Kaundal |
|
NetBio COSI |
| 1122 | Comparative time-ordered gene coexpression network (TO-GCN) reveals novel regulators of heart regeneration | Yes-Poster only | Yao-Ming Chang |
|
NetBio COSI |
| 1261 | PySCNet: A tool for reconstructing and analyzing gene regulatory network from single-cell RNA-Seq data. | Yes-Poster only | Ming Wu |
|
NetBio COSI |
| 1273 | Unraveling Common Functional Modules Underlying Molecular Mechanisms of Comorbid Diseases via Network-Based Molecular Interaction Analysis | Yes-Poster only | Hyoung-Sam Heo |
|
NetBio COSI |
| 1310 | A new functional enrichment method for transcriptomics and proteomics in STRING using protein-protein interaction-based clusters. | Yes-Poster only | Annika Gable |
|
NetBio COSI |
| 1337 | Connectivity Measures for Signaling Pathway Topologies | Yes-Poster only | Anna Ritz |
|
NetBio COSI |
| 1342 | DRUG REPOSITIONING WITH NETWORK ANALYSIS IN CANCER | Yes-Poster only | Ülkü Ünsal |
|
NetBio COSI |
| 1381 | Dashboarding and tidying the KEGG pathway data | Yes-Poster only | Kozo Nishida |
|
NetBio COSI |
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| 43 | Index and vocabulary of accessible DNA elements in the human genome | Yes-Talk only | |
Wouter Meuleman |
RegSys COSI |
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| 48 | BRIC: Biclustering-based gene Regulation Inference and Cell type Prediction from Single-cell RNA-Seq Data | No | |
|
RegSys COSI |
| 54 | Chromosome conformation analysis of ependymoma tumors identifies putative target genes activated by distal oncogenic enhancers | Yes-Poster only | Konstantin Okonechnikov |
|
RegSys COSI |
| 67 | A pipeline for single-cell spatial transcriptomic data analysis and visualization | Yes-Poster only | Guo-Cheng Yuan |
|
RegSys COSI |
| 90 | CBNA: A control theory based method for identifying coding and non-coding cancer drivers | Yes-Poster only | Vu Viet Hoang Pham |
|
RegSys COSI |
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| 106 | A Bayesian nonparametric integration approach for functional regulatory network inference in haematopoietic development from multi-omics data | No | |
|
RegSys COSI |
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| 111 | Single-cell multi-omic integration compares and contrasts features of brain cell identity | Yes-Talk only | |
Joshua Welch |
RegSys COSI |
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| 126 | Integrative analysis of epigenetics data identifies gene-specific regulatory elements | Yes-Poster only | Marcel Schulz |
|
RegSys COSI |
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| 142 | Allele-specific analysis of epigenomic and transcriptomic data to study Drosophila developmental cis-regulatory architecture. | Yes-Talk only | |
Swann Floc'Hlay |
RegSys COSI |
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| 179 | TNBC.CMS: Consensus molecular subtype classifier for triple-negative breast cancer based on gene expression profile | Yes-Poster only | Doyeong Yu |
|
RegSys COSI |
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| 198 | Saturation mutagenesis of disease-associated regulatory elements | Yes-Talk only | |
Max Schubach |
RegSys COSI |
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| 209 | Topological structure analysis of Hi-C interaction graphs | Yes-Poster only | Juris Viksna |
|
RegSys COSI |
| 233 | Sequence-level instructions direct transcription at polyT short tandem repeats | Yes-Poster only | Charles Lecellier |
|
RegSys COSI |
| 237 | Highly rearranged chromosomes reveal uncoupling between chromatin organization and gene expression | Yes-Poster only | Aleksander Jankowski |
|
RegSys COSI |
| 238 | Enhancer prediction in the human genome using supervised probabilistic modelling of epigenetic data | Yes-Poster only | Maria Osmala |
|
RegSys COSI |
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| 256 | Mapping multi-way chromatin contacts of individual alleles using PromethION long-read sequencing | Yes-Talk only | |
Jeroen de Ridder |
RegSys COSI |
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| 280 | Dissecting Regulatory Networks at Single Cell Level with scHINT | Yes-Poster only | Zhijian Li |
|
RegSys COSI |
| 305 | A DNA methylation state transition model reveals the programmed epigenetic heterogeneity in pre-implantation embryos | Yes-Poster only | Yong Zhang |
|
RegSys COSI |
| 310 | A DEEP LEARNING-BASED APPROACH TO DISSECTING FUNCTIONAL IMPACT OF DNA METHYLATION IN PLANTS | Yes-Poster only | Ngoc Tu Le |
|
RegSys COSI |
| 328 | Gene network reconstruction using single cell transcriptomic data reveals key factors for autophagic process | Yes-Poster only | Junil Kim |
|
RegSys COSI |
| 349 | Combining transcriptional and post-transcriptional regulation to predict mutations altering the gene regulatory program in cancer cells | Yes-Talk and Poster | Jaime A Castro-Mondragon |
Jaime A Castro-Mondragon |
RegSys COSI |
| 368 | Gene expression signatures of cell death and proliferation - from confounding factors to biological insight and effective prediction | Yes-Poster only | Bence Szalai |
|
RegSys COSI |
| 369 | Splotch: robust estimation of spatial gene expression and alignment of spatial and single-cell transcriptomic studies. | Yes-Poster only | Richard Bonneau |
|
RegSys COSI |
| 381 | TFmotifView: a webserver for the visualization of transcription factor motifs in genomic regions | Yes-Poster only | Anaïs Bardet |
|
RegSys COSI |
| 392 | Pan-cancer identification of transcription factors associated with aberrant DNA methylation patterns | Yes-Talk and Poster | Roza Berhanu Lemma |
Roza Berhanu Lemma |
RegSys COSI |
| 404 | Comprehensive pipeline for processing, deconvolution and visualization of complex DNA methylation data | Yes-Poster only | Michael Scherer |
|
RegSys COSI |
| 411 | Characterizing cell-type specific gene regulation from single-cell transcriptome profiling | Yes-Poster only | Padvitski Tsimafei |
|
RegSys COSI |
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| 437 | Identifying sequence-based determinants of chromatin architecture with machine learning | No | |
|
RegSys COSI |
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| 442 | ChimeraUGEM: unsupervised gene expression modeling in any given organism | No | |
|
RegSys COSI |
| 450 | Cell type and brain region-specific chromatin abnormalities in dopamine depleted mice | Yes-Poster only | Alyssa Lawler |
|
RegSys COSI |
| 489 | Differential analysis of transcription factor activity from gene expression | Yes-Poster only | Murat Can Cobanoglu |
|
RegSys COSI |
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| 503 | Regulatory network analyses to identify transcription factor regulators of disease biomarkers | No | |
|
RegSys COSI |
| 519 | PenDA, a rank-based method for Personalized Differential Analysis: application to lung cancer | Yes-Poster only | Magali Richard |
|
RegSys COSI |
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| 533 | TAD cliques shape the 4-dimensional genome during terminal differentiation | Yes-Talk only | |
Sebastian Kurscheid |
RegSys COSI |
| 560 | Inference of transcription factor cooperativity and its impact on protein-phenotype interactions | Yes-Talk only | |
Ignacio Ibarra Del Río |
RegSys COSI |
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| 570 | Epigenomics and Single-Cell Sequencing Define Cellular Heterogeneity in Langerhans Cell Histiocytosis | Yes-Poster only | Florian Halbritter |
|
RegSys COSI |
| 573 | Cross-species Analysis Reveal Regulatory Loci Underlying Limb Diversity | Yes-Poster only | Shalu Jhanwar |
|
RegSys COSI |
| 586 | Identification and categorization of rare single base variations in scRNA-Seq data | Yes-Poster only | Dena Leshkowitz |
|
RegSys COSI |
| 599 | UTAP: User-friendly Transcriptome Analysis Pipeline | Yes-Poster only | Refael Kohen |
|
RegSys COSI |
| 628 | CRUP: A comprehensive framework to predict condition-specific regulatory units | Yes-Poster only | Verena Heinrich |
|
RegSys COSI |
| 648 | ReMap 2020: Update of the regulatory regions atlas from an integrative analysis of ChIP-seq for human and plants experiments. | Yes-Poster only | Jeanne Chèneby |
|
RegSys COSI |
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| 692 | Gene regulation through optimization of codon usage in embryonic stem cells | Yes-Talk only | |
Susanne Bornelöv |
RegSys COSI |
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| 696 | Non-optimal codon usage effects protein expression levels as means of cell-cycle regulation | Yes-Poster only | Mahua Bhattacharya |
|
RegSys COSI |
| 710 | Integration of multi-omics data elucidates the genetic control of cellular signaling | Yes-Poster only | Corinna Lewis Schmalohr |
|
RegSys COSI |
| 718 | Analysis of the structural variability of topologically associated domains as revealed by Hi-C | Yes-Poster only | Natalie Sauerwald |
|
RegSys COSI |
| 726 | Topological data analysis reveals principles of chromosome structure throughout cellular differentiation | Yes-Poster only | Natalie Sauerwald |
|
RegSys COSI |
| 731 | Unfolding the non-coding RNA landscape in pluripotency and differentiation | Yes-Poster only | Rina Ben-El |
|
RegSys COSI |
| 739 | Cell-ID: Cell identity prediction and gene signature extraction at single-cell resolution | Yes-Poster only | Antonio Rausell |
|
RegSys COSI |
| 742 | Combining single-cell genomics with lineage tracing to study the lineage plasticity of vascular smooth muscle cells | Yes-Poster only | Lina Dobnikar |
|
RegSys COSI |
| 760 | Predicting enhancers in mammalian genomes using supervised hidden Markov models | Yes-Poster only | Tobias Zehnder |
|
RegSys COSI |
| 761 | Reconstruction of enhancer-target gene regulatory network integrating three-dimensional chromatin architecture | Yes-Poster only | Elisa Salviato |
|
RegSys COSI |
| 789 | HiCExplorer 3: A toolbox for Hi-C data analysis | Yes-Poster only | Joachim Wolff |
|
RegSys COSI |
| 801 | A framework for exhaustive modelling of logical genetic interactions using Petri nets | Yes-Poster only | K. Anton Feenstra |
|
RegSys COSI |
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| 804 | UNFOLD: Resolving complex structural variations in the genome by unfolding Hi-C data | No | |
|
RegSys COSI |
| 813 | Genetic regulation across 1,300 human induced pluripotent stem cell lines | Yes-Poster only | Marc Jan Bonder |
|
RegSys COSI |
| 837 | Characterizing a focused landscape of Familial Acute Respiratory Distress Syndrome | Yes-Poster only | Inimary Toby |
|
RegSys COSI |
| 861 | scds: Computational Annotation of Doublets in Single Cell RNA sequencing Data | Yes-Poster only | Dennis Kostka |
|
RegSys COSI |
| 880 | Predicting individual variation in chromatin architecture from RNA-Seq data | Yes-Poster only | Lucas van Duin |
|
RegSys COSI |
| 892 | A dynamic landscape of enhancer clusters and core regulatory circuitries in mouse development | Yes-Poster only | Aziz Khan |
|
RegSys COSI |
| 898 | Disentangling transcription factor binding site complexity | Yes-Poster only | Ralf Eggeling |
|
RegSys COSI |
| 901 | FORGE2: cell type-specific signal analysis for GWAS across multiple epigenomic datasets | Yes-Poster only | Charles Breeze |
|
RegSys COSI |
| 913 | Chromatin remodeling regulates DNA replication timing | Yes-Poster only | Ruslan Sadreyev |
|
RegSys COSI |
| 921 | Evolutionary analysis of cis-regulatory elements, chromatin changes and gene expression in the central nervous system of primates | Yes-Poster only | Dmitry Svetlichnyy |
|
RegSys COSI |
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| 993 | Benchmarked strategies to improve accuracy of gene regulatory networks from scRNA-seq | Yes-Talk only | |
Emily R. Miraldi |
RegSys COSI |
| 1003 | Transcription factor binding to mismatched DNA and its potential role in mutagenesis | Yes-Talk and Poster | Harshit Sahay |
Harshit Sahay |
RegSys COSI |
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| 1014 | The effects of UV damage on transcription factor binding to DNA | Yes-Poster only | Raluca Gordan |
|
RegSys COSI |
| 1021 | Identifying cis-regulatory regions for targeted therapeutic expression | Yes-Poster only | Oriol Fornes |
|
RegSys COSI |
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| 1039 | Characterizing the spatial organization of protein-DNA complexes in a comprehensive epigenome | Yes-Talk only | |
Shaun Mahony |
RegSys COSI |
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| 1061 | Characteristic of human putative transcriptional target genes and discovery of biased orientation of DNA motifs affecting transcription of genes | Yes-Poster only | Naoki Osato |
|
RegSys COSI |
| 1063 | Analyzing Motif Combinations In Enhancer-Promoter Interactions | Yes-Poster only | Mu Yang |
|
RegSys COSI |
| 1076 | Discovering Structural Units of Chromosomal Organization with Matrix Factorization and Graph Regularization | Yes-Talk and Poster | Da-Inn Lee |
Da-Inn Lee |
RegSys COSI |
| 1077 | Discovering Gene Regulatory Network Rewiring Associated to Drug Response | Yes-Poster only | Mikel Hernaez |
|
RegSys COSI |
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| 1089 | Identifying strengths and weaknesses of computational network inference methods on single cell RNA-seq data | Yes-Talk only | |
Matthew Stone |
RegSys COSI |
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| 1144 | A Bayesian Markov models-based motif discovery tool for predicting motifs in nucleotide sequences and its web server | Yes-Poster only | Wanwan Ge |
|
RegSys COSI |
| 1147 | Predicting and elucidating transcriptional activity from sequence with Deep Learning | Yes-Poster only | Nicolas Alcaraz |
|
RegSys COSI |
| 1152 | Identifying transcription factors linked to gene expression changes during a key cell state transition in mouse red blood cell development | Yes-Poster only | Rob Beagrie |
|
RegSys COSI |
| 1159 | Functional analysis of image-based cell profiling from high throughput cancer target screening | Yes-Poster only | Euna Jeong |
|
RegSys COSI |
| 1191 | LIQUORICE: Coverage bias correction for the analysis of epigenetic signatures in liquid biopsies | Yes-Poster only | Peter Peneder |
|
RegSys COSI |
| 1196 | NGseqBasic - a single-command UNIX tool for ATAC-seq, DNaseI-seq, Cut-and-Run, and ChIP-seq data mapping, high-resolution visualisation, and quality control | Yes-Poster only | Jelena Telenius |
|
RegSys COSI |
| 1220 | Machine learning approach in resolving the riddle of absent expression correlation of transcription factors and their targets. | Yes-Poster only | Adam Zaborowski |
|
RegSys COSI |
| 1314 | Statistical inference for overlaps of ChIP-seq experiments | Yes-Poster only | Alena van Bömmel |
|
RegSys COSI |
| 1320 | Polympact: exploring the impact of inherited variants in cancer | Yes-Poster only | Samuel Valentini |
|
RegSys COSI |
| 1330 | Identification of Different Promoter Architectures Using Non-Negative Matrix Factorization | Yes-Poster only | Sarvesh Nikumbh |
|
RegSys COSI |
| 1341 | Cartography of DNA replication initiation zones in 12 cell lines reveals replication plasticity in late replicating regions | Yes-Poster only | Hadi Kabalane |
|
RegSys COSI |
| 1365 | Benchmarking functional genomics tools on simulated and real single-cell RNA-seq data | Yes-Poster only | Christian Holland |
|
RegSys COSI |
| 1369 | Maternal dietary glycemic index and load is associated with changes in the infants’ methylome | Yes-Poster only | Negusse Kitaba |
|
RegSys COSI |
| 8 | MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance | Yes-Talk and Poster | Xin Lai |
Xin Lai |
RNA COSI |
| 14 | Comparative transcriptome-wide analysis of Methicillin-Resistant and Methicillin-sensitive Staphylococcus aureus for identification of antibiotic resistance mecA gene | Yes-Poster only | Sushmita Dhusia |
|
RNA COSI |
| 15 | Identification of CRISPR arrays using machine learning approach | Yes-Poster only | Alexander Mitrofanov |
|
RNA COSI |
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| 59 | A Comprehensive Map of Intron Branchpoints and Lariat RNAs in Plants | No | |
|
RNA COSI |
| 62 | Elucidation of novel therapeutic targets for acute myeloid leukemias with RUNX1-RUNX1T1 fusion | Yes-Poster only | Sejong Chun |
|
RNA COSI |
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| 83 | Cellular proteostasis collapse and decoupling between transcription and translation regulation in mammalian senescence | Yes-Talk only | |
Reut Shalgi |
RNA COSI |
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| 91 | Evaluating the impact of RNA purification kit and blood collection tube in the extracellular RNA quality control study – important considerations for liquid biopsies | Yes-Poster only | Annelien Morlion |
|
RNA COSI |
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| 107 | Amino acid biosynthesis regulation during ER stress is coupled to protein expression demands | No | |
|
RNA COSI |
| 122 | RNA 2D/3D structure prediction with a consensus of contact methods | Yes-Talk and Poster | Russell Hamilton |
Russell Hamilton |
RNA COSI |
| 167 | Integrative analysis reveals common microRNAs regulating similar network of pathways dysregulated across multiple carcinomas | Yes-Poster only | Divya Niveditha |
|
RNA COSI |
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| 176 | What can we do with RNA-protein interaction? | Yes-Talk only | |
Rolf Backofen |
RNA COSI |
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| 178 | Analysis of grapevine transcriptome under biotic stress caused by Xanthomonas citri | No | |
|
RNA COSI |
| 263 | Innovative advanced computational solutions for improved gene and transcript level analysis using RNA-seq | Yes-Talk and Poster | Runxuan Zhang |
Runxuan Zhang |
RNA COSI |
| 396 | Integrative analysis of untranslated regions in human messenger RNAs uncovers G-quadruplexes as constrained regulatory features | Yes-Talk and Poster | David S.M. Lee |
David S.M. Lee |
RNA COSI |
| 399 | miRAW: A deep learning approach to predict miRNA targets | Yes-Poster only | Yafei Xing |
|
RNA COSI |
| 408 | Predicting canonical and non-canonical box C/D snoRNA interactions using machine learning | Yes-Talk and Poster | Gabrielle Deschamps-Francoeur |
Gabrielle Deschamps-Francoeur |
RNA COSI |
| 410 | High throughput experimental method improves deep learning prediction model of miRNA targets | Yes-Poster only | Siqing Liu |
|
RNA COSI |
| 428 | A landscape of circadian and ultradian alternative splicing in mammalian tissues | Yes-Talk and Poster | Rukeia El-Athman |
Rukeia El-Athman |
RNA COSI |
| 453 | Dual RNA-seq provides insight into the RNA biology of the neglected intracellular human pathogen Orientia tsutsugamushi | Yes-Poster only | Bozena Mika-Gospodorz |
|
RNA COSI |
| 464 | miRBaseMiner, a python package for curating miRNA annotation in miRBase | Yes-Poster only | Xiangfu Zhong |
|
RNA COSI |
| 474 | Single cell transcriptomics of liver-expressed long non-coding RNAs | Yes-Talk and Poster | Kritika Karri |
Kritika Karri |
RNA COSI |
| 480 | Benchmarking the impact of data transformation, pre-processing and choice of method in the computational deconvolution of transcriptomics data | Yes-Poster only | Francisco Avila Cobos |
|
RNA COSI |
| 487 | Association of Cis-regulatory G-quadruplex Motifs With Splice Sites in the Human Genome | Yes-Poster only | Paramjeet Bagga |
|
RNA COSI |
| 495 | Pan-transcriptomic analysis identified common differentially expressed genes in response to polymyxins in Acinetobacter baumannii | Yes-Poster only | Mengyao Li |
|
RNA COSI |
| 505 | Transcriptional Landscape of Human Progenitor Cell Populations | Yes-Talk and Poster | Maina Bitar |
Maina Bitar |
RNA COSI |
| 529 | PolyA-miner: Accurate Estimation of Alternative Poly-Adenylation from 3’Seq data using Non-negative matrix factorization and Vector algebra | Yes-Talk and Poster | Hari Krishna Yalamanchili |
Hari Krishna Yalamanchili |
RNA COSI |
| 549 | Genome wide small RNA profiling reveals dynamic transcriptome adaptation in Paramecium | Yes-Poster only | Sivarajan Karunanithi |
|
RNA COSI |
| 574 | DTUrtle - an easily accessible Differential Transcript Usage analysis pipeline | Yes-Poster only | Tobias Tekath |
|
RNA COSI |
| 584 | RNA sequence-structure alignment for comparing pseudoknot structures and virus terminals | Yes-Poster only | Gianvito Urgese |
|
RNA COSI |
| 588 | Gene fusions as prognostic markers for Prostate Cancer | Yes-Poster only | Carolin Schimmelpfennig |
|
RNA COSI |
| 614 | tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing | Yes-Poster only | Adnan M. Niazi |
|
RNA COSI |
| 621 | Circular RNA landscape in the ageing African turquoise killifish | Yes-Poster only | Franziska Metge |
|
RNA COSI |
| 657 | Assessing the performance of coevolution-based RNA contact prediction | Yes-Poster only | Fabrizio Pucci |
|
RNA COSI |
| 661 | Transcriptomics of cardiac biopsies reveals differences in patients with or without diagnostic parameters for heart failure with preserved ejection fraction | Yes-Poster only | Christoffer Frisk |
|
RNA COSI |
| 664 | Predicting isoform transcripts: lessons from human, mouse and dog | Yes-Poster only | Nicolas Guillaudeux |
|
RNA COSI |
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| 686 | Measuring isoform co-expression in single-cell RNAseq successfully decodes splicing coordination as a key determinant of neural cell-type identity | Yes-Talk only | |
Ángeles Arzalluz-Luque |
RNA COSI |
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| 693 | Advanced and reproducible bioinformatics approaches for high-throughput RNA-Seq data analyses | Yes-Poster only | Patrick Blumenkamp |
|
RNA COSI |
| 695 | Learning to Fold RNAs in Linear Time | Yes-Poster only | Liang Huang |
|
RNA COSI |
| 699 | LinearCoFold: Two-Strand RNA Folding in Linear Time | Yes-Talk and Poster | Liang Huang |
Liang Huang |
RNA COSI |
| 716 | sRNA Analysis with TEsmall: A holistic approach to differential expression | Yes-Poster only | Kathryn O'Neill |
|
RNA COSI |
| 723 | Trinity SuperTranscripts in the Cancer Transcriptome Analysis Toolkit | Yes-Poster only | Vrushali Fangal |
|
RNA COSI |
| 727 | inferCNV - predicting CNA from single cell tumor RNA-seq | Yes-Poster only | Christophe Georgescu |
|
RNA COSI |
| 733 | Fusion Transcript Prediction Accuracy Analysis Framework | Yes-Poster only | Brian Haas |
|
RNA COSI |
| 737 | A Dimensional Reduced Model for the Classification of RNA-Seq Anopheles Gambiae Data | Yes-Poster only | Micheal Arowolo |
|
RNA COSI |
| 745 | A versatile web-accessible single cell RNA-seq processing platform | Yes-Poster only | Andreas Hoek |
|
RNA COSI |
| 803 | snoDB: Visualizing the Human snoRNome | Yes-Poster only | Philia |
|
RNA COSI |
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| 835 | Learning biologically meaningful representations of cancer transcriptomes with hierarchical Variational Bayes | Yes-Talk only | |
Jasleen Grewal |
RNA COSI |
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| 879 | RNA Splicing Analysis for Large Heterogeneous Datasets | Yes-Poster only | Jorge Vaquero-Garcia |
|
RNA COSI |
| 885 | Genome wide quantification of ADAR A-to-I RNA editing activity | Yes-Talk and Poster | Shalom Hillel Roth |
Shalom Hillel Roth |
RNA COSI |
| 890 | Adjusting for known and unknown confounding factors in RNASeq based splicing analysis | Yes-Talk and Poster | Barry Slaff |
Barry Slaff |
RNA COSI |
| 906 | Chromatin-enriched RNAs mark both active and repressive cis-regulation: a computational analysis of nuclear RNA-seq | Yes-Talk and Poster | Xinan Yang |
Xinan Yang |
RNA COSI |
| 919 | ExpressionAble: Making it easy to transform expression data from one file format to another | Yes-Poster only | Nathan Mella |
|
RNA COSI |
| 933 | High resolution analysis of functional regions of mRNA folding in protein-coding sequences across the tree of life | Yes-Talk and Poster | Michael Peeri |
Michael Peeri |
RNA COSI |
| 936 | Feature reduction of CRISPR-Cas9 on-target efficiency prediction improves the accuracy | Yes-Talk and Poster | Guilia Corsi |
Guilia Corsi |
RNA COSI |
| 937 | Multi-omics data integration uncovers candidate molecular biomarkers for minimal hepatic encephalopathy | Yes-Poster only | Teresa Rubio |
|
RNA COSI |
| 974 | Isoforms across single cells and brain cell types. | Yes-Talk and Poster | Hagen Tilgner |
Hagen Tilgner |
RNA COSI |
| 1002 | Reference-free transcriptome assembly of nanopore RNA-seq data | Yes-Talk and Poster | Ka Ming Nip |
Ka Ming Nip |
RNA COSI |
| 1017 | Is this the “end”? Termin(A)ntor: Transcriptome annotation with deep learning | Yes-Talk and Poster | Chen Yang |
Chen Yang |
RNA COSI |
| 1033 | RNA-seq methodological landscape : the ignored importance of the choice of genome annotations | Yes-Talk and Poster | Joël Simoneau |
Joël Simoneau |
RNA COSI |
| 1059 | Novel bioinformatics tools to assess the functional impact of alternative isoform usage | Yes-Talk and Poster | Francisco Pardo Palacios |
Francisco Pardo Palacios |
RNA COSI |
| 1071 | miRCoop: Identifying Cooperating Pairwise miRNAs \\ via Kernel Based Interaction Test | Yes-Talk and Poster | Gulden Olgun |
Gulden Olgun |
RNA COSI |
| 1081 | Global analysis of human mRNA folding demonstrates significant population constraint of disruptive synonymous variants | Yes-Talk and Poster | Peter White |
Peter White |
RNA COSI |
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| 1086 | Complexity and evolution of the mammalian transcriptome: the architecture of alternative transcription and processing | Yes-Talk only | |
Svetlana Shabalina |
RNA COSI |
| 1105 | ShiRlOc: A robust computational approach to analyze Polysome Profiling RNA-Seq Data | Yes-Talk and Poster | Mikel Hernaez |
Mikel Hernaez |
RNA COSI |
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| 1106 | ncRPheno: a comprehensive database platform for interpreting and prioritizing noncoding RNA dysregulation associated with diseases | No | |
|
RNA COSI |
| 1108 | scSLAM-seq and GRAND-SLAM reveal core features of CMV-induced regulation in single cells | Yes-Talk and Poster | Florian Erhard |
Florian Erhard |
RNA COSI |
| 1138 | Rfam: the database of 3,000+ non-coding RNA families | Yes-Poster only | Ioanna Kalvari |
|
RNA COSI |
| 1143 | Transcription in mitochondria of Trypanosoma brucei | Yes-Poster only | Ruslan Afasizehv |
|
RNA COSI |
| 1146 | RNA quality control in mitochondria of Trypanosoma brucei | Yes-Poster only | Inna Afasizheva |
|
RNA COSI |
| 1243 | Exploring the X-Chromosome Inactivation (XCI) process with single-allele resolution | Yes-Poster only | Guido Pacini |
|
RNA COSI |
| 1272 | A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model | Yes-Poster only | Kengo Sato |
|
RNA COSI |
| 1294 | Inferring RNA-binding sites, motifs and regulation from CLIP data with RCRUNCH | Yes-Poster only | Maria Katsantoni |
|
RNA COSI |
| 1300 | miRNAmotif – pre-miRNA interactions with protein in physiological conditions and cancer | Yes-Poster only | Martyna Urbanek-Trzeciak |
|
RNA COSI |
| 1321 | RNAs associated with presence of circulating tumor cells with mesenchymal phenotype in primary breast cancer tumours | Yes-Poster only | Dominik Hadzega |
|
RNA COSI |
| 1322 | DIANA-mAP: An Automated pipeline for the quantification of microRNAs | Yes-Poster only | Ioannis Kavakiotis |
|
RNA COSI |
| 1371 | Transcriptome analysis of chronic lymphocytic leukemia reveals intron retention as a common mechanism regulating B cell receptor signaling | Yes-Poster only | Murat Iskar |
|
RNA COSI |
| 1405 | CloseCall: a novel pipeline to identify RNA-RNA interactions | Yes-Poster only | Steven Wingett |
|
RNA COSI |
| 39 | Computational Studies on Ureter Smooth Muscle: Modeling Ion Channels and their Role in Generating Electrical Activity | Yes-Poster only | Chitaranjan Mahapatra |
|
SysMod COSI |
| 55 | Metabolic modeling of retinoblastoma in Indian population | Yes-Poster only | Swagatika Sahoo |
|
SysMod COSI |
| 80 | µbialSim: Simulating complex microbial communities at their natural diversity | Yes-Talk and Poster | Florian Centler |
Florian Centler |
SysMod COSI |
| 124 | Inverse engineering metabolomics data to infer regulations of biological network | Yes-Poster only | Jiahang Li |
|
SysMod COSI |
| 152 | Modelling bistable tumour population dynamics to design effective treatment strategies | Yes-Poster only | Chen-Hsiang Yeang |
|
SysMod COSI |
| 188 | Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis | Yes-Talk and Poster | Van Du T. Tran |
Marco Pagni |
SysMod COSI |
| 219 | Towards Homogeneous Modeling and Simulation of Whole-Cells | Yes-Talk and Poster | Paulo Eduardo Pinto Burke |
Paulo Eduardo Pinto Burke |
SysMod COSI |
| 234 | Metabolic models to screen gut microbial metabolites augmenting mitochondrial function | Yes-Poster only | Prashant Bajpai |
|
SysMod COSI |
| 236 | Bayesian Metabolic Flux Analysis reveals intracellular flux couplings | Yes-Poster only | Maria Osmala |
|
SysMod COSI |
| 246 | Whole Cell Simulation of Bacteria from Genomic Sequence | Yes-Poster only | Kazunari Kaizu |
|
SysMod COSI |
| 284 | Assessing the impact of biological aerosols on rainfall: effects of land cover diversity and landscape properties | Yes-Poster only | Rachel Kohn |
|
SysMod COSI |
| 292 | Taxonomic Gap Filling of Metabolic Networks Yields Increased Accuracy | Yes-Poster only | Peter Karp |
|
SysMod COSI |
| 300 | Prediction of pharmacokinetic profiles using chemical structure information: Fraction unbound in plasma and renal excretion | Yes-Poster only | Reiko Watanabe |
|
SysMod COSI |
| 304 | Computational modeling of the immune response to Clostridium difficile infection | Yes-Poster only | Meghna Verma |
|
SysMod COSI |
| 308 | Development of DruMAP, Drug Metabolism and pharmacokinetics Analysis Platform | Yes-Poster only | Hitoshi Kawashima |
|
SysMod COSI |
| 327 | Identifying knock-outs when the desired target chemical is toxic for the microorganism | Yes-Poster only | Irene Ziska |
|
SysMod COSI |
| 367 | Modelling potentially virulence-associated metabolic pathways in Pseudomonas aeruginosa PA14 including experimental verification | Yes-Poster only | Alina Renz |
|
SysMod COSI |
| 378 | Optimal information acquisition of the molecular systems in living organisms require a non-minimal level of noise | Yes-Talk and Poster | Eugenio Azpeitia |
Eugenio Azpeitia |
SysMod COSI |
| 383 | Understanding Regulatory Mechanisms Underlying Stem Cells Helps to Identify Cancer Biomarkers | Yes-Poster only | Maryam Nazarieh |
|
SysMod COSI |
| 395 | Constraint-based modeling of human single cells to investigate metabolic heterogeneity in cancer subpopulations | Yes-Talk and Poster | Davide Maspero |
Davide Maspero |
SysMod COSI |
| 397 | Metabolic Network Reconstruction of Treponema pallidum spp. pallidum | Yes-Poster only | Andreas Dräger |
|
SysMod COSI |
| 407 | An in silico mechanistic representation of an in vitro neutropenia assay to explore dose and schedules | Yes-Talk and Poster | Cristina Santini |
Cristina Santini |
SysMod COSI |
| 448 | Representation of ME-Models in SBML | Yes-Poster only | Andreas Dräger |
|
SysMod COSI |
| 484 | Using Protein Localization Studies to Improve Genome-scale Metabolic Models | Yes-Poster only | Uri David Akavia |
|
SysMod COSI |
| 537 | A mechanistically detailed model of the cell cycle in Saccharomyces cerevisiae | Yes-Poster only | Ulrike Münzner |
|
SysMod COSI |
| 561 | Modeling recovery of Crohn's disease, by simulating microbial community dynamics under perturbations | Yes-Talk and Poster | Beatriz García-Jiménez |
Beatriz García-Jiménez |
SysMod COSI |
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| 582 | The regulation of aquaporin 2 vesicle transport by localized cyclic AMP pools. | Yes-Talk only | |
Christoph Leberecht |
SysMod COSI |
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| 598 | Inferring subcellular compartmentalized flux in cancer cells: A new approach integrating isotope tracing with thermodynamic analysis | No | |
|
SysMod COSI |
| 600 | A Stochastic Model for Topographically Influenced Cell Migration | Yes-Poster only | Adam Mitchinson |
|
SysMod COSI |
| 622 | Logical approach to identify Boolean networks modeling cell differentiation | Yes-Poster only | Stéphanie Chevalier |
|
SysMod COSI |
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| 647 | Learning dynamical information from static protein and sequencing data | Yes-Talk only | |
Philip Pearce |
SysMod COSI |
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| 713 | Repurposing drugs and identifying interventional targets for cardiovascular disease using qualitative logical modeling | Yes-Poster only | Ioannis Xenarios |
|
SysMod COSI |
| 715 | Making Sense of Large Kinetic Models | Yes-Talk and Poster | Fabian Fröhlich |
Fabian Fröhlich |
SysMod COSI |
| 721 | Logical models and cell-cell communication networks to investigate pattern formation | Yes-Poster only | Pedro Varela |
|
SysMod COSI |
| 736 | Mechanistic modelling reveals a mixed phosphorylation mechanism of Hog1 MAPK switching between low and high processivity | Yes-Poster only | Maximilian Mosbacher |
|
SysMod COSI |
| 759 | Modelling gene regulatory networks in oncogene-induced senescence | Yes-Poster only | Jose Americo N L F Freitas |
|
SysMod COSI |
| 768 | An integrative workflow to visualize Elementary Flux Modes in genome-scale metabolic models | Yes-Poster only | Chaitra Sarathy |
|
SysMod COSI |
| 799 | Stochastic system identification without an a priori chosen kinetic model — exploring feasible cell regulation with piecewise linear functions | Yes-Talk and Poster | Martin Hoffmann |
Martin Hoffmann |
SysMod COSI |
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| 818 | Agent-Based Intelligent System Modelling of Immune-Tumour Interactions for In Silico Bioengineering | No | |
|
SysMod COSI |
| 819 | Systems biology in hematopoietic cell stem and progenitor populations: Integrating multiple *omics datasets to understand differentiation | Yes-Poster only | Jens Lichtenberg |
|
SysMod COSI |
| 849 | Personalization of logical models using multi-omics data and its use in the study of clinical stratification and drug response | Yes-Talk and Poster | Jonas BÉal |
Jonas BÉal |
SysMod COSI |
| 857 | Modeling the propagation of the innate immune response to control influenza virus infection | Yes-Talk and Poster | Gregory Smith |
Gregory Smith |
SysMod COSI |
| 915 | COMBINING MULTIPLE MICRO-ENVIRONMENTAL FACTORS IN THE PREDICTION OF INTERVERTEBRAL DISC CELL BEHAVIOR THROUGH AGENT-BASED MODELLING | Yes-Poster only | Jérôme Noailly |
|
SysMod COSI |
| 928 | SBML to Knowledge Graph in Neo4j | Yes-Poster only | Thorsten Tiede |
|
SysMod COSI |
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| 968 | Mathematical Modeling of Macronutrient Signaling in Saccharomyces cerevisiae | No | |
|
SysMod COSI |
| 990 | Pleiades Toolkit: Automatic rule-based modeling of bacterial gene regulation enables simulation, prediction, and perturbation of gene responses | Yes-Talk and Poster | Rodrigo Santibáñez |
Rodrigo Santibáñez |
SysMod COSI |
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| 1060 | Integrated Flux Analysis of Susceptible and Resistant Escherichia coli under Antibiotic Stress | No | |
|
SysMod COSI |
| 1232 | Modelling Xenopus egg extract aster microtubule autonucleation with RDMEcpp | Yes-Poster only | Lukas A. Widmer |
|
SysMod COSI |
| 1301 | Workflow for TF knockout simulations on transcriptome primed whole genome metabolic model reconstructions for 10 antibiotic resistant E. coli strains | Yes-Poster only | Daria Gaidar |
|
SysMod COSI |
| 1362 | A Hybrid Framework based on Network Analysis and Regression Optimisation Models for QSAR Applications | Yes-Poster only | Sophia Tsoka |
|
SysMod COSI |
| 1370 | In silico study of protein-inhibitor interactions using PTP1B as molecular target | Yes-Poster only | Andrea Coronell Tovar |
|
SysMod COSI |
| 1384 | An Extended Kappa Simulator for Agent and Rule Based Models | Yes-Poster only | Ignacio Fuenzalida |
|
SysMod COSI |
| 61 | Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets | Yes-Talk and Poster | Graciela Gonzalez |
Graciela Gonzalez |
Text Mining (Special Session) |
| 127 | ClaimMiner: Query-guided Claim Mining in Biomedical Literature | Yes-Talk and Poster | Jiawei Han |
Jiawei Han |
Text Mining (Special Session) |
| 128 | Organizing Bioinformatics GitHub Repositories with Multidimensional Text Cube | Yes-Poster only | Jiawei Han |
|
Text Mining (Special Session) |
| 143 | Combining databases and text-mining for biological pathway reconstruction | Yes-Poster only | Salvador Casaní |
|
Text Mining (Special Session) |
| 145 | Discovery of disease- and drug-specific pathways through community structures of a literature network | Yes-Talk and Poster | Minh Pham |
Minh Pham |
Text Mining (Special Session) |
| 183 | System development for extracting up-to-date adverse drug effects from MEDLINE | Yes-Poster only | Yutaro Okano |
|
Text Mining (Special Session) |
| 203 | Literature Network: Text mining-based extraction of molecular networks in Cytoscape | Yes-Poster only | Marc Legeay |
|
Text Mining (Special Session) |
| 306 | Identification of disease-related genes using GloVe in word embedding | Yes-Poster only | Giup Jang |
|
Text Mining (Special Session) |
| 344 | Multi-Task Learning using Neural Networks for Biomedical Text Mining | Yes-Poster only | Lisa Langnickel |
|
Text Mining (Special Session) |
| 376 | Social Media Mining for Studying Patient-Reported Birth Defect Outcomes | Yes-Poster only | Gonzalez-Hernandez Graciela |
|
Text Mining (Special Session) |
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| 394 | A new approach and gold standard toward author disambiguation in MEDLINE | Yes-Talk only | |
Raul Rodriguez-Esteban |
Text Mining (Special Session) |
| 498 | An Effective Biomedical Document Classification Scheme in Support of Biocuration: Addressing Class Imbalance | Yes-Talk and Poster | Xiangying Jiang |
Xiangying Jiang |
Text Mining (Special Session) |
| 517 | FullMeSH: Improving Large-Scale MeSH Indexing with Full Text | Yes-Talk only | |
Shanfeng Zhu |
Text Mining (Special Session) |
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| 525 | Predicting disease-gene associations using weighted gene network and literature data | Yes-Poster only | Sangwon Shin |
|
Text Mining (Special Session) |
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| 550 | Annotation transfer for biomedical articles: predicting annotations using the citation network | No | |
|
Text Mining (Special Session) |
| 645 | Deep neural multi-task learning improves biomedical concept recognition | Yes-Poster only | Lawrence Hunter |
|
Text Mining (Special Session) |
| 676 | Opportunities and Problems Related to Novel Trainable Protein Representations | Yes-Poster only | Serbulent Unsal |
|
Text Mining (Special Session) |
| 694 | Factoid: Making Biological Pathways in Research Articles Easy to Find and Access | Yes-Poster only | Augustin Luna |
|
Text Mining (Special Session) |
| 708 | A benchmark of concept recognition systems | Yes-Poster only | Lenz Furrer |
|
Text Mining (Special Session) |
| 734 | PubTator Central: Automated Concept Annotation of Biomedical Full Text Articles | Yes-Poster only | Zhiyong Lu |
|
Text Mining (Special Session) |
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| 756 | Using the power of text-mining for biological discovery with Europe PMC Annotations platform | Yes-Talk only | |
Aravind Venkatesan |
Text Mining (Special Session) |
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| 794 | Extracting Figures, SubFigures and Captions from Biomedical Publications: Toward Well-Targeted Bio-Curation Support | Yes-Poster only | Pengyuan Li |
|
Text Mining (Special Session) |
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| 825 | Tissue-aware framework for unraveling rare and complex diseases using biomedical literature | Yes-Talk only | |
Ruth Dannenfelser |
Text Mining (Special Session) |
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| 846 | An Informatics Map for Understanding Rare Mitochondrial Disease Symptomology | Yes-Poster only | Anders Olav Garlid |
|
Text Mining (Special Session) |
| 851 | LexMapr: a rule-based text mining tool for ontology-driven harmonization of short biomedical specimen descriptions | Yes-Poster only | Gurinder Pal Gosal |
|
Text Mining (Special Session) |
| 868 | A visual analytics tool to enhance pathway models with literature-based evidence and confidence: LitPathExplorer | Yes-Poster only | Chrysoula Zerva |
|
Text Mining (Special Session) |
| 953 | A text-mined integrated knowledge map for MicroRNAs | Yes-Talk and Poster | Debarati Roychowdhury |
Debarati Roychowdhury |
Text Mining (Special Session) |
| 1001 | OntoMate: a text-mining tool to facilitate curation at the Rat Genome Database | Yes-Talk and Poster | Jennifer R. Smith |
Jennifer R. Smith |
Text Mining (Special Session) |
| 1011 | Learning Structured Knowledge from Clinical Case Reports | Yes-Talk and Poster | Harry Caufield |
Wei Wang |
Text Mining (Special Session) |
| 1044 | Text Mining for Biomedical Literature-Based Discovery | Yes-Poster only | Jiawei Han |
|
Text Mining (Special Session) |
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| 1049 | Cloud-based Phrase Mining Reveals Critical Molecular Insights of Major Cardiovascular Diseases. | Yes-Talk only | |
Peipei Ping |
Text Mining (Special Session) |
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| 2 | Decoding cancer heterogeneity: towards rational design of personalized drug treatments | No | |
|
TransMed COSI |
| 10 | Sclust: Inference of subclonal populations in cancer genomes using smoothing splines | Yes-Poster only | Yupeng Cun |
|
TransMed COSI |
| 13 | Simulation of Virtual Multi-Scale, Multi-Modal Patient Trajectories using Bayesian Networks and Autoencoder | Yes-Poster only | Meemansa Sood |
|
TransMed COSI |
| 16 | GuiltyTargets: Prioritization of Novel Therapeutic Targets with Deep Network Representation Learning | Yes-Poster only | Holger Fröhlich |
|
TransMed COSI |
| 46 | Estimation of Phenotypes and Side Effects from DNA Minor-Groove-Binding Pyrrole-Imidazole Polyamides | Yes-Poster only | Jason Lin |
|
TransMed COSI |
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| 49 | Cancer subtype identification using somatic mutation data | No | |
|
TransMed COSI |
| 77 | Transcriptome and Regulatory Network Analyses of CD19-CAR-T Immunotherapy for B-ALL | Yes-Poster only | Anyuan Guo |
|
TransMed COSI |
| 81 | Association Analysis for Categorical Variables with Two Censored Events | Yes-Poster only | Yoojoong Kim |
|
TransMed COSI |
| 110 | Modeling of human diseases with Rat Genome Database resources | Yes-Poster only | Monika Tutaj |
|
TransMed COSI |
| 136 | Integrative analysis of non-coding RNAs reveals PTTG3P increases tumor tumorigenicity via FOXM1/BUB1B signaling pathway in lung adenocarcinoma | Yes-Poster only | Jou-Ho Shih |
|
TransMed COSI |
| 146 | Genome-wide analysis of DNA methylation and the gene expression change in ovalbumin-induced asthma mice model | Yes-Poster only | Joong Sun Kim |
|
TransMed COSI |
| 151 | Latent class mixture models to identify heterogenous treatment response trajectories in rheumatoid arthritis patients | Yes-Poster only | Joseph Blair |
|
TransMed COSI |
| 159 | Clustering multivariate longitudinal clinical patient data using variational deep embedding with recurrence | Yes-Talk and Poster | Johann de Jong |
Johann de Jong |
TransMed COSI |
| 195 | The DisGeNET platform’s 10 anniversary: developing a knowledge base for disease genomics | Yes-Poster only | Laura I. Furlong |
|
TransMed COSI |
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| 211 | Prioritising cancer therapeutic targets through CRISPR-Cas9 screens and multi-omics data integration | Yes-Talk only | |
Francesco Iorio |
TransMed COSI |
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| 223 | ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer | Yes-Poster only | Judith Pérez Granado |
|
TransMed COSI |
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| 227 | From question to publication in five days - how OHDSI is changing medical evidence generation through open science | Yes-Talk only | |
Kees van Bochove |
TransMed COSI |
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| 252 | Artificial Intelligence for identifying novel therapeutic targets, biomarkers and drug repositioning opportunities | Yes-Poster only | Woochang Hwang |
|
TransMed COSI |
| 375 | Integrative –omics approach to study ethnic difference in Insulin Resistance | Yes-Poster only | Amelia Li Min Tan |
|
TransMed COSI |
| 402 | Visualization and Quantification of Spatial Heterogeneity in the Tumor Microenvironment | Yes-Poster only | Andreas Spitzmüller |
|
TransMed COSI |
| 431 | Personalized medicine: an evaluation of genes selection methods applied to the kidney cancer TCGA dataset | Yes-Poster only | Rémy Jardillier |
|
TransMed COSI |
| 452 | Donor specific injuries in human lung transplantation: a comprehensive bioinformatics and systems biology approach on a large cohort | Yes-Poster only | Cristina Baciu |
|
TransMed COSI |
| 467 | Potential Therapeutic Targets for Donor Lung Repair During Human Ex Vivo Lung Perfusion | Yes-Poster only | Aaron Wong |
|
TransMed COSI |
| 469 | Combining Machine Learning with Single-cell Analysis for Individualized Precision Medicine | Yes-Talk and Poster | Benedict Anchang |
Benedict Anchang |
TransMed COSI |
| 471 | Investigation of the association between mutational landscape of DNA repair genes and treatment response to cancer immunotherapy | Yes-Poster only | Yu-Chao Wang |
|
TransMed COSI |
| 509 | Designing of latency reversal agent: The way to completely eradicate HIV infection | Yes-Poster only | Dr. Sanjeev Kumar Singh |
|
TransMed COSI |
| 510 | Integrative group and individual specific transcriptome profiling to uncover heterogeneity in survival among Pancreatic Ductal Adenocarcinoma (PDAC) patients | Yes-Poster only | Archana Bhardwaj |
|
TransMed COSI |
| 538 | Drug response prediction by ensemble learning and drug-induced gene expression signatures | Yes-Poster only | Mehmet Tan |
|
TransMed COSI |
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| 545 | Feature selection for predictors of immune checkpoint inhibitor therapy success of non-small-cell lung cancer | No | |
|
TransMed COSI |
| 631 | Using genetic similarities among ageing-related diseases to understand and intervene ageing | Yes-Talk and Poster | Handan Melike Donertas |
Handan Melike Donertas |
TransMed COSI |
| 638 | ReactomeGSA - A new service for multi-omics comparative pathway analysis in REACTOME | Yes-Poster only | Johannes Griss |
|
TransMed COSI |
| 670 | Pathway-based drug discovery and repositioning for cancers | Yes-Poster only | Michio Iwata |
|
TransMed COSI |
| 684 | Improving characterisation of glioma patients by consensus independent component analysis | Yes-Poster only | Petr Nazarov |
|
TransMed COSI |
| 714 | HypEst: Method for Hypoxic-State Estimation using Pan-Tissue Background Distributions | Yes-Poster only | Natalie Davidson |
|
TransMed COSI |
| 744 | A new machine learning method to predict treatment benefit in cancer through simulation of alternative treatment effects | Yes-Poster only | Joske Ubels |
|
TransMed COSI |
| 785 | Deep analysis of copy number variation (CNV) profiles to delineate early spread in lung cancer | Yes-Poster only | Martin Hoffmann |
|
TransMed COSI |
| 800 | Rare Disease Gene Prioritization Using MEDLINE Derived Association Network | Yes-Talk and Poster | Vg Saipradeep |
Vg Saipradeep |
TransMed COSI |
| 810 | Genetic alterations driving metastatic colony formation are acquired outside of the primary tumour in melanoma | Yes-Poster only | Martin Hoffmann |
|
TransMed COSI |
| 816 | A novel neural network model of structured differential gene expression for molecular diagnostics | Yes-Poster only | Michael Mayhew |
|
TransMed COSI |
| 820 | Somatic mutations in noninvasive follicular thyroid neoplasms with papillary-like nuclear features (NIFTPs) and papillary thyroid cancers (PTCs) | Yes-Poster only | Aleksandra Pfeifer |
|
TransMed COSI |
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| 836 | Improving the discriminatory power of combinatorial antigen recognition in T cell therapies for cancer | No | |
|
TransMed COSI |
| 848 | Therapy alteration of solid tumors based on FoundationOne comprehensive genome profiling assay | Yes-Poster only | Abdullah Kahraman |
|
TransMed COSI |
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| 889 | Objective risk stratification of prostate cancer using machine learning and radiomics applied to mpMRI images | No | |
|
TransMed COSI |
| 908 | Early changes in PIGF trajectory may be a response biomarker for anti-angiogenic treatment in patients with metastatic colorectal cancer | Yes-Poster only | Tine Descamps |
|
TransMed COSI |
| 930 | Small epigenetic signatures for cellular classification and deconvolution | Yes-Poster only | Tiago Maié |
|
TransMed COSI |
| 969 | An Informatics Framework for Knowledge Representation and Reconciliation of Disease Pathways | Yes-Poster only | Yulia Innokenteva |
|
TransMed COSI |
| 976 | A machine learning approach for predicting metastatic cancer patient response to cancer therapies | Yes-Poster only | Emre Erhan |
|
TransMed COSI |
| 994 | Multi-omics data integration and patient survival analysis – a new approach towards treatment personalisation based on leukemia case study | Yes-Poster only | Gruca Aleksandra |
|
TransMed COSI |
| 1007 | Identifying host marker genes for identification of Ebola virus infection | Yes-Poster only | Howard Fan |
|
TransMed COSI |
| 1020 | Transcriptomic profile after a single-dose of neoadjuvant dual-HER2 blockade better predicts pathologic response than at baseline in HER2-positive inflammatory breast cancer | Yes-Poster only | Nathan Johnson |
|
TransMed COSI |
| 1042 | Identifying Biomarkers for Precision Cancer Medicine using Patient-Derived Xenografts | Yes-Poster only | Arvind Singh Mer |
|
TransMed COSI |
| 1051 | Harnessing genetic interactions to advance precision cancer medicine | Yes-Talk and Poster | Joo Sang Lee |
Joo Sang Lee |
TransMed COSI |
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| 1095 | Harmonizing transcriptomes by imputing missing values and predicting sample sources | No | |
|
TransMed COSI |
| 1109 | Large-scale correction of faulty diagnoses in population-wide Danish registry data | Yes-Poster only | Isabella Friis Jørgensen |
|
TransMed COSI |
| 1130 | Second-generation molecular subgrouping of medulloblastoma: an international meta-analysis of Group 3 and Group 4 subtypes | Yes-Poster only | Tanvi Sharma |
|
TransMed COSI |
| 1164 | Benchmarking of single-cell-tailored latent factor models uncover known and novel gene signatures in Lupus Nephritis and Rheumatoid Arthritis scRNA-seq data | Yes-Poster only | Giovanni Palla |
|
TransMed COSI |
| 1199 | Exploring the direct and inverse comorbidities in dementia using laboratory tests and clinical features | Yes-Poster only | Francesco Russo |
|
TransMed COSI |
| 1203 | A potential radiogenomic clinical application: improving the prediction accuracy of cancer stages | Yes-Poster only | Mohamed Hamed |
|
TransMed COSI |
| 1237 | Mapping Dosage Landscapes in Polypharmacology: A Temporal Analysis of 1.5M Patients | Yes-Poster only | Cristina Leal Rodríguez |
|
TransMed COSI |
| 1244 | Integrative molecular profiling and high-throughput drug testing to define molecular denominators of drug sensitivity and resistance in acute myeloid leukemia | Yes-Poster only | Ashwini Kumar |
|
TransMed COSI |
| 1255 | Replication of polygenic scores for lab traits between biobanks and EHR-genetic studies | Yes-Poster only | Samuel Handelman |
|
TransMed COSI |
| 1269 | Gene Expression Alterations associated with Computed Tomography Imaging Clusters of Patients with Chronic Obstructive Pulmonary Disease | Yes-Poster only | Ke Xu |
|
TransMed COSI |
| 1284 | Development of Multimarkers for Early Detection of Diabetic Retinopathy Using LC-MS/MS and Antibody-Based Verification | Yes-Poster only | Jonghwa Jin |
|
TransMed COSI |
| 1302 | Translation of a Standardized and Compliant Bioinformatics Analysis Pipeline from Research to Clinical Trials | Yes-Poster only | Andreas Richter |
|
TransMed COSI |
| 1312 | Discovery of functional alternatively spliced PKM transcripts in human cancers | Yes-Poster only | Xiangyu Li |
|
TransMed COSI |
| 1319 | Characterisation of wild-type Von Hippel-Lindau clear cell renal cell Carcinoma with the application of both a bottom-up and a top-down multi-omic integrative approach | Yes-Poster only | Aashil A Batavia |
|
TransMed COSI |
| 1323 | A Prediction Method for pathologic complete response and relapse in breast cancer using differential gene expression of immune response | Yes-Poster only | Sung Hee Park |
|
TransMed COSI |
| 1331 | In silico prediction of drug response in pancreatic cancer-derived organoids | Yes-Poster only | Linda Grob |
|
TransMed COSI |
| 1348 | Breeze – web based drug screening data analysis platform | Yes-Poster only | Swapnil Potdar |
|
TransMed COSI |
| 1360 | Polypharmacy landscape of 1.5 million Danish patients: a longitudinal analysis of drug-disease triplets | Yes-Poster only | Alejandro Aguayo-Orozco |
|
TransMed COSI |
| 1367 | Characterization of the Tumor Microenvironment by Unsupervised Pattern Recognition in Multiparametric Immunofluorescence Images | Yes-Poster only | Jutta Kollet |
|
TransMed COSI |
| 1373 | Obesity-associated mutational signatures in cancers | Yes-Poster only | Anna Hakobyan |
|
TransMed COSI |
| 1401 | ELIXIR-LU: providing sustainability to clinical and translational medicine for research | Yes-Poster only | Venkata Pardhasaradhi Satagopam |
|
TransMed COSI |
| 66 | Recurrent miscalling of missense variation from short-read genome sequence data | Yes-Poster only | Matt Field |
|
VarI COSI |
| 120 | Prioritization of variants by their tissue specific effect on open chromatin during embryogenesis | Yes-Poster only | Mattia Forneris |
|
VarI COSI |
| 137 | appreci8R: an R Package for Calling Variants the “appreci8'”-Way | Yes-Poster only | Sarah Sandmann |
|
VarI COSI |
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| 147 | Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes | Yes-Talk only | |
Andrea Castro |
VarI COSI |
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| 154 | A statistical approach to detect genetic variation as the cause of far-away transcriptional regulation | Yes-Poster only | Nina Baumgarten |
|
VarI COSI |
| 205 | AMLVaran: Improvements in user-friendlyness of a human NGS variant assessment system | Yes-Poster only | Christian Wünsch |
|
VarI COSI |
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| 210 | VarNote: ultrafast and scalable variant annotation for big genomic features | No | |
|
VarI COSI |
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| 212 | GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits. | No | |
|
VarI COSI |
| 272 | cepip2: Prioritization of causal regulatory variants of complex traits in the relevant tissues and cell types | Yes-Poster only | Hongcheng Yao |
|
VarI COSI |
| 353 | Finding needles in haystacks: An application of the R Shiny framework to gene hunting in lists of variants | Yes-Poster only | Marius Wöste |
|
VarI COSI |
| 360 | Novel alternative splicing events in CLU and PICALM in Alzheimer 's disease | Yes-Poster only | Younghee Lee |
|
VarI COSI |
| 364 | An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar | Yes-Poster only | Anne Estreicher |
|
VarI COSI |
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| 372 | Analysis of Pathogenic Mutations in Phosphodiesterases | No | |
|
VarI COSI |
| 400 | Towards oligogenic disease prediction with ORVAL: a web-platform to uncover pathogenic variant combinations | Yes-Talk and Poster | Alexandre Renaux |
Alexandre Renaux |
VarI COSI |
| 423 | PVAR3D: a database of Protein Variations involved in Antibiotics Resistance and mapped on three dimensional structures | Yes-Poster only | Teresa Tavella |
|
VarI COSI |
| 449 | VarSight: Prioritizing Clinically Reported Variants with Binary Classification Algorithms | Yes-Poster only | James Holt |
|
VarI COSI |
| 485 | An Artificial Intelligence Engine for High-Throughput ACMG/AMP Classification of Genetic Variants for Inherited Disease Clinical Gene Panels | Yes-Talk and Poster | Erwin Frise |
Erwin Frise |
VarI COSI |
| 486 | Causal Mediation of Multiple Genotype Effects in Multi-Omic Data | Yes-Poster only | William Casazza |
|
VarI COSI |
| 523 | A fast and flexible framework for network assisted genomic association | Yes-Talk and Poster | Daniel Carlin |
Daniel Carlin |
VarI COSI |
| 603 | Combined molecular dynamics, dynamic network analysis and statistical approaches to understand the functional significance of missense variations for drug design purposes | Yes-Poster only | Ozlem Tastan Bishop |
|
VarI COSI |
| 604 | Somatic Variant Calling Benchmarking | Yes-Poster only | Milan Domazet |
|
VarI COSI |
| 635 | Facilitating the interpretation of variant molecular effects using protein functional residue annotation | Yes-Poster only | Andrew Nightingale |
|
VarI COSI |
| 662 | Use of an integrative machine learning approach utilising homology modelling for the clinical interpretation of genetic variation: CACNA1F as an exemplar | Yes-Poster only | Shalaw Sallah |
|
VarI COSI |
| 663 | Exome wide identification of pathogenic variants by Paralogue Annotation | Yes-Poster only | Nicholas Li |
|
VarI COSI |
| 665 | The importance of being unbiased: why protein structure and training setup are important for predicting novel pathogenic genetic variants | Yes-Talk and Poster | Alexander Gress |
Alexander Gress |
VarI COSI |
| 669 | ITHANET: An information and database community portal for haemoglobinopathies | Yes-Poster only | Petros Kountouris |
|
VarI COSI |
| 687 | Enrichment and Clustering of Rare Genetic Variants using Shared Protein Structure Domains | Yes-Talk and Poster | James Stephenson |
James Stephenson |
VarI COSI |
| 764 | Bayesian multiple logistic regression for case-control GWAS | Yes-Talk and Poster | Saikat Banerjee |
Saikat Banerjee |
VarI COSI |
| 770 | MMSplice: modular modeling improves the predictions of genetic variant effects on splicing | Yes-Talk and Poster | Jun Cheng |
Jun Cheng |
VarI COSI |
| 771 | RNA-seq for identifying splicing variants in Mendelian disease: tools and evaluation | Yes-Poster only | Joseph K. Aicher |
|
VarI COSI |
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| 774 | Annotation and prioritization of non-coding variants in the context of human diseases | Yes-Talk only | |
Lambert Moyon |
VarI COSI |
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| 833 | Benefits of integrating splice effect predictions in genome-wide variant scoring | Yes-Poster only | Philipp Rentzsch |
|
VarI COSI |
| 874 | Privacy-preserving Search for Sharing Genetic Variants | Yes-Poster only | Kana Shimizu |
|
VarI COSI |
| 876 | Spatial Chromatin Architecture Alteration by Structural Variations in Human Genomes at Population Scale | Yes-Talk and Poster | Michal Sadowski |
Michal Sadowski |
VarI COSI |
| 907 | Germline alteration detection using a parents-child trio bioinformatics analysis pipeline. | Yes-Poster only | Layal Yasin |
|
VarI COSI |
| 922 | Varhouse: Translating Scalable and Secure Variant Interpretation from Research to the Clinic | Yes-Poster only | David Gordon |
|
VarI COSI |
| 991 | Antimicrobial resistance prediction from whole-genome sequence data using transfer learning | Yes-Poster only | Logan Kopas |
|
VarI COSI |
| 997 | Novel evaluations of genotype imputation programs | Yes-Poster only | Nathan Yang |
|
VarI COSI |
| 1016 | Third nucleotide position content of nearby codons is highly predictive of synonymous codon usage | Yes-Poster only | Blythe Moreland |
|
VarI COSI |
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| 1023 | SigLASSO: optimizing cancer mutation signatures jointly with sampling likelihood | No | |
|
VarI COSI |
| 1073 | Characterizing allele specific expression using whole exome and transcriptome sequencing to improve the diagnosis of rare genetic diseases. | Yes-Poster only | Numrah Fadra |
|
VarI COSI |
| 1127 | Leveraging the transcriptome to identify driver mutations and their modus operandi | Yes-Poster only | Maarten Larmuseau |
|
VarI COSI |
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| 1188 | VarGenius2 finds SNVs and CNVs in WES, WGS and RNASeq and paves the way to implementation of downstream algorithms for cohort data traversing | No | |
|
VarI COSI |
| 1240 | SigsPack, a package for cancer signatures | Yes-Poster only | Dieter Beule |
|
VarI COSI |
| 1248 | Identifying De Novo Noncoding Mutations Associated with Autism Spectrum Disorders | Yes-Poster only | Christopher Castro |
|
VarI COSI |
| 1262 | Advanced variant filtering for interpretation of WGS data | Yes-Poster only | Nasim Shabani Lalani |
|
VarI COSI |
| 1266 | Prediction of Mutation Effects using a Deep Temporal Convolutional Network | Yes-Poster only | Ha Young Kim |
|
VarI COSI |
| 1279 | RNA Editing in Pediatric Brain Tumors | Yes-Poster only | Christian Aichmüller |
|
VarI COSI |
| 1299 | A tool to identify variants by genome comparisons of multiple bacterial generations | Yes-Poster only | Eri Hayashi |
|
VarI COSI |
| 1305 | VETA: a framework to assess computational tools for predicting clinical significance of genetic variation | Yes-Poster only | Pedro Barbosa |
|
VarI COSI |
| 1329 | Predicting disease-causing mutation based on their spatial proximity to protein functional sites | Yes-Poster only | François Ancien |
|
VarI COSI |
| 1340 | PhenBook: federated data structure model to collect and analyse phenotype | Yes-Poster only | Haleh Chizari |
|
VarI COSI |
