Attention Presenters - please review the Speaker Information Page available here
Schedule subject to change
All times listed are in BST
Monday, July 21st
14:00-14:15
Invited Presentation: Benchmarking foundation models in biology: where we are, and we where we want to go with the community
Format: In person

Moderator(s): Gustavo Stolovitzky


Authors List: Show

  • Julio Saez-Rodriguez

Presentation Overview: Show

TBA

14:15-14:45
Invited Presentation: Building Foundation Models for Single-cell Omics and Imaging
Format: In person

Moderator(s): Gustavo Stolovitzky


Authors List: Show

  • Bo Wang

Presentation Overview: Show

This talk delves into the innovative utilization of generative AI in propelling biomedical research forward. By harnessing single-cellsequencing data, we developed scGPT, a foundational model that extracts biological insights from an extensive dataset of over 33 million cells. Analogous to how words form text, genes define cells, effectively bridging the technological and biological realms. The strategic application of scGPT via transfer learning significantly boosts its efficacy in diverse applications such as cell-type annotation, multi-batch integration, and gene network inference.Additionally, the talk will spotlight MedSAM, a state-of-the-art segmentation foundational model. Designed for universal application, MedSAM excels across various medical imaging tasks and modalities. It showcased unprecedented advancements in 30 segmentation tasks, outperforming existing models considerably. Notably, MedSAM possesses the unique ability for zero-shot and few-shot segmentation, enabling it to identify previously unseen tumor types andswiftly adapt to novel imaging modalities.Collectively, these breakthroughs emphasize the importance of developing versatile andefficient foundational models. These models are poised to address the expanding needs of imaging and omics data, thus driving continuous innovation in biomedical analysis.

14:45-15:00
Invited Presentation: Predicting Perturbation Effects: Are We Really There?
Format: In person

Moderator(s): Gustavo Stolovitzky


Authors List: Show

  • Maria Brbic

Presentation Overview: Show

TBA

15:00-15:15
Invited Presentation: AI Alliance: Benchmarking foundation models for drug discovery
Format: In person

Moderator(s): Gustavo Stolovitzky


Authors List: Show

  • Pablo Meyer-Rojas

Presentation Overview: Show

TBA

15:15-15:30
Invited Presentation: Benchmarking in Service of Virtual Cell Models: Challenges, Opportunities, and a Path Forward
Format: In person

Moderator(s): Gustavo Stolovitzky


Authors List: Show

  • Katrina Kalantar

Presentation Overview: Show

TBA