ORAL PRESENTATIONS



OP01
IndeCut: A Cut-norm Based Method for Evaluating Independent and Uniform Sampling in Network Motif Discovery Algorithms

Presenting Author: Mitra Ansariola, Oregon State University


OP02
Reproducible Computational Workflows with Continuous Analysis

Presenting Author: Brett Beaulieu-Jones, University of Pennsylvania


OP03
Application Ontologies Supporting Phenotyping from Clinical Text

Presenting Author: Wendy Chapman, University of Utah


OP04
SPARQLer: Making Knowledge Functional

Presenting Author: Daniel McShan, University of Colorado School of Medicine


OP05
Improved Network Ontology Analysis by Segmentation

Presenting Author: Ananda Mondal, Claflin University


OP06
An Image Phenotyping Environment Based on Open-Source Tools

Presenting Author: Brian Chapman, University of Utah


OP07
InterViewer, a new Cytoscape-based viewer that displays interactions between selected sets of proteins

Presenting Author: Marek Tutaj, Medical College of Wisconsin


OP08
CAMSA: a Tool for Comparative Analysis and Merging of Scaffold Assemblies

Presenting Author: Max Alekseyev, George Washington University


OP09
Analysis of Tobacco Users Admitted to Intensive Care Units

Presenting Author: Andrey Soares, University of Colorado School of Medicine


OP10
A new molecular signature approach for prediction of driver cancer pathways from transcriptional data

Presenting Author: Boris Reva, Icahn School of Medicine at Mount Sinai


OP11
Computational analysis of breakome reveals replication fork movement and elucidates mechanisms of DNA double-stranded break formation

Presenting Author: Maga Rowicka, University of Texas Medical Branch at Galveston


OP12
HRC3 – A new class of motifs involved in chromatin organization and development.

Presenting Author: Andrzej Kudlicki, University of Texas Medical Branch


OP13
Transforming OWL for Network Inference

Presenting Author: Tiffany Callahan, University of Colorado Denver Anschutz Medical Campus


OP14
ShinyLearner: Enabling biologists to perform robust machine-learning classification

Presenting Author: Stephen Piccolo, Brigham Young University


OP15
Stratification of prostate cancer patients based on molecular interaction profiles

Presenting Author: Roland Mathis, IBM Research


OP16
Medication Data Mining of Electronic Medical Records Reveal Race-Specific Prescription Patterns

Presenting Author: Benjamin Glicksberg, Icahn School of Medicine at Mount Sinai


OP17
Comparative analysis of the expression patterns and regulation of histone variant genes reveals a novel epigenetic pathway related to cancer

Presenting Author: Michael Tolstorukov, Massachusetts General Hospital and Harvard Medical School


OP18
The Cognoma Collaborative creates a webapp to predict cancer mutations from gene expression

Presenting Author: Daniel Himmelstein, University of Pennsylvania


OP19
Functionally prioritizing candidate genes from genome-wide association studies

Presenting Author: Kelsey Anderson, University of Colorado School of Medicine


OP20
Deriving Population-Scale Therapeutic Trajectories to Enable Precision Pharmacology

Presenting Author: Kipp Johnson, Icahn School of Medicine at Mount Sinai


OP21
Comparison of Relief-F Nucleotide Differences For GWAS Data With Application to Bipolar Disorder

Presenting Author: Marziyeh Arabnejad Khanouki, University of Tulsa


OP22
ModEvo: A Web-Based Tool for Modeling Evolutionary Dynamics

Presenting Author: Filip Jagodzinski, Western Washington University


OP23
Predicting Neural Fluctuations in the Primary Visual Cortex

Presenting Author: William Kindel, University of Colorado School of Medicine


OP24
De novo protein structure prediction by big data and deep learning

Presenting Author: Sheng Wang, Toyota Technological Institute at Chicago


OP25
Identifying the mechanism for the metastatic spread of breast cancer through integration of gene expression, whole genome sequencing and functional screens.

Presenting Author: Eran Andrechek, Michigan State University


OP26
Allelic Maps of Cancer

Presenting Author: Anelia Horvath, George Washington University


OP27
Identifying non-specific effects of small molecule treatment through GSEA meta-analysis

Presenting Author: Rani Powers, University of Colorado Anschutz Medical Campus


OP28
Insights into Bathyarcheota Ecology and Co-occurrence Patterns as Revealed by Public Metagenome Sequencing Data

Presenting Author: David Banks-Richardson, University of Colorado-Denver


OP29
The SNPPhenA Corpus: An annotated research abstract corpus for extracting ranked association of single-nucleotide polymorphisms and phenotypes

Presenting Author: Hamidreza Chitsaz, Colorado state university


OP30
Toward a Metric Learning Model for Protein Fold Recognition Using a Novel Feature Extraction Technique Based on the Mixture of Evolutionary and Secondary Structural Information

Presenting Author: Pooya Zakeri, 1)KU Leuven. 2)iMinds


OP31
Development of a diagnostic to profile eukaryotic microbes of the human microbiome

Presenting Author: Ana Popovic, Hospital for Sick Children, University of Toronto


OP32
G4 quadruplexes in and near regulatory elements of maize genes predict tissue type and altered transcriptional response to abiotic stresses

Presenting Author: Mingze He, Iowa State University


OP33
Modeling heterogeneous cell populations using Boolean networks

Presenting Author: Brian Ross, University of Colorado


OP34
Enhancer Reprogramming in Mammalian Genomes

Presenting Author: Mario Flores, NIH


OP35
The Finite State Projection based Fisher Information Matrix for the Design of Single-Cell Experiments.

Presenting Author: Zachary Fox, Colorado State University


OP36
2-Scale KNN Classifications

Presenting Author: Destiny Anyaiwe, Oakland University


OP37
Best practices for reproducible and robust data analysis in a bioinformatics core facility

Presenting Author: James Denvir, Marshall University


OP38
The Affinity Data Bank for biophysical analysis of regulatory sequences

Presenting Author: Todd Riley, University of Massachusetts Boston


OP39
Pattern-based estimation of the extent of explicit contradiction in the scientific literature

Presenting Author: Elizabeth White, University of Colorado Denver, Anschutz


OP40
Towards Highly Accurate Mapping of Protein Glycosylation Sites in the Human Proteome

Presenting Author: Chen Li, Monash University