Poster Session List


P01
CAMSA: a Tool for Comparative Analysis and Merging of Scaffold Assemblies

Presenting Author: Max Alekseyev, George Washington University

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P02
Identifying the mechanism for the metastatic spread of breast cancer through integration of gene expression, whole genome sequencing and functional screens.

Presenting Author: Eran Andrechek, Michigan State University

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P03
IndeCut: A Cut-norm Based Method for Evaluating Independent and Uniform Sampling in Network Motif Discovery Algorithms

Presenting Author: Mitra Ansariola, Oregon State University

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P04
2-Scale KNN Classifications

Presenting Author: Destiny Anyaiwe, Oakland University

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P05
Abstract Withdrawn
Comparison of Relief-F Nucleotide Differences For GWAS Data With Application to Bipolar Disorder

Presenting Author: Marziyeh Arabnejad Khanouki, University of Tulsa

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P06
Insights into Bathyarcheota Ecology and Co-occurrence Patterns as Revealed by Public Metagenome Sequencing Data

Presenting Author: David Banks-Richardson, University of Colorado-Denver

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P07
Inter-annotator agreement and the upper bound on system performance in biomedical and general-domain natural language processing

Presenting Author: Mayla Boguslav, University of Colorado School of Medicine

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P08
Transforming OWL for Network Inference

Presenting Author: Tiffany Callahan, University of Colorado Denver Anschutz Medical Campus

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P09
Antibacterial potential of two peptides derived from a ribosomal protein from Pyrobaculum aerophilum

Presenting Author: Elizabete Cândido, Universidade Católica de Brasília

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P10
A polyalanine peptide derived from polar fish with anti-infectious activities

Presenting Author: Marlon Cardoso, Universidade de Brasília

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P11
Application Ontologies Supporting Phenotyping from Clinical Text

Presenting Author: Wendy Chapman, University of Utah

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P12
An Image Phenotyping Environment Based on Open-Source Tools

Presenting Author: Brian Chapman, University of Utah

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P13
The SNPPhenA Corpus: An annotated research abstract corpus for extracting ranked association of single-nucleotide polymorphisms and phenotypes

Presenting Author: Hamidreza Chitsaz, Colorado state university

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P14
Computational Drug Discovery: An In Silico and In Vitro Exploration into Combining Established Therapies for Treatment-Resistant Melanoma

Presenting Author: Brian Cicali, Stockton University

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P15
Visualizing the Role of Horizontal Gene Transfer within Pseudomonas aeruginosa

Presenting Author: Evan Cudone,

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P16
Improving User Experience and Tool Interoperability at the Rat Genome Database

Presenting Author: Jeff De Pons, Medical College of Wisconsin

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P17
Towards Efficient Patient Care Management System for Terminally ill Patients

Presenting Author: Avinda De Silva, Corona del Sol High School

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P18
Best practices for reproducible and robust data analysis in a bioinformatics core facility

Presenting Author: James Denvir, Marshall University

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P19
PyoFuel - Using Python and Pathway Tools to engineer synthetic Biofuel

Presenting Author: Ashley D'Souza, Westwood High School, Austin, Texas

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P20
Enhancer Reprogramming in Mammalian Genomes

Presenting Author: Mario Flores, NIH

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P21
The Finite State Projection based Fisher Information Matrix for the Design of Single-Cell Experiments.

Presenting Author: Zachary Fox, Colorado State University

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P22
Unbiased Sequence Identification using Multiple K-mers

Presenting Author: Cody Glickman, University of Colorado Denver

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P23
Medication Data Mining of Electronic Medical Records Reveal Race-Specific Prescription Patterns

Presenting Author: Benjamin Glicksberg, Icahn School of Medicine at Mount Sinai

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P24
Reproducible Computational Workflows with Continuous Analysis

Presenting Author: Brett Beaulieu-Jones, University of Pennsylvania

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P25
Integrative Genomic Analysis of Candidate Long Non-Coding RNAs Associated with Autism

Presenting Author: Brian Gudenas, Clemson University

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P26
ModEvo: A Web-Based Tool for Modeling Evolutionary Dynamics

Presenting Author: Rainier Harvey, Western Washington University

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P27
G4 quadruplexes in and near regulatory elements of maize genes predict tissue type and altered transcriptional response to abiotic stresses

Presenting Author: Mingze He, Iowa State University

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P28
Population-Specific Diagnostic Analysis for Improving Detection of Disease-Associated Genes in Type 2 Diabetes

Presenting Author: Michael Hinterberg, University of Colorado

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P29
Multimethod Computational Modeling Analysis of Spontaneous and Xenobiotic-Modulated Mitochondrial Dysfunction Underlying Degenerative Senescence

Presenting Author: Timothy Hoffman, Colorado State University

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P30
Prediction of Prokaryotic Optimum Growth Temperature Based on Genomic and Proteomic Features

Presenting Author: Mallika Iyer, University of Colorado Denver

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P31
Deriving Population-Scale Therapeutic Trajectories to Enable Precision Pharmacology

Presenting Author: Kipp Johnson, Icahn School of Medicine at Mount Sinai

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P32
KScope: A Fast Machine Learning Composition-Based Genomic Read Classification Tool

Presenting Author: Laurynas Kalesinskas, Loyola University Chicago

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P33
A Spatiotemporal Model To Simulate Chemotherapy Regimens For Heterogeneous Bladder Cancer Metastases To The Lung

Presenting Author: Kimberly Kanigel Winner, University of Colorado School of Medicine

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P34
ScanGEO - mining high-throughput functional genomics data

Presenting Author: Katja Koeppen, Geisel School of Medicine at Dartmouth

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P35
Inexpensive Mobile Diagnosis of Diabetic Retinopathy using Deep Learning

Presenting Author: Kavya Kopparapu, Thomas Jefferson High school

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P36
HRC3 – A new class of motifs involved in chromatin organization and development.

Presenting Author: Andrzej Kudlicki, University of Texas Medical Branch

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P37
Reconstructing protein and gene phylogenies by extending the framework of reconciliation

Presenting Author: Esaie Kuitche, Université de Sherbrooke

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P38
A New Algorithm for Biomedical Article Ranking

Presenting Author: Ying Liu, St. John's University

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P39
Stratification of prostate cancer patients based on molecular interaction profiles

Presenting Author: Roland Mathis, IBM Research

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P40
Proteomic analysis of human serum samples to reveal new biomarkers and mechanisms of NSAID-induced cardiovascular toxicity

Presenting Author: Jane Mitchell, Imperial College London

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P41
Abstract Withdrawn
The change in gut microbiome between obesity and non-obesity groups among different populations

Presenting Author: Sung Joon Park, Thomas Jefferson High School for Science and Technology

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P42
Using Segmental Duplications to Analyze the Accuracy of TE Classification and the Frequency of Gene Conversion between TE Remnants

Presenting Author: Gilia Patterson, University of Montana

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P43
ShinyLearner: Enabling biologists to perform robust machine-learning classification

Presenting Author: Stephen Piccolo, Brigham Young University

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P44
Development of a diagnostic to profile eukaryotic microbes of the human microbiome

Presenting Author: Ana Popovic, Hospital for Sick Children, University of Toronto

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P45
Identifying non-specific effects of small molecule treatment through GSEA meta-analysis

Presenting Author: Rani Powers, University of Colorado Anschutz Medical Campus

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P46
Whole genome sequencing and De novo assembly from a critically endangered mammal, the Sumatran Rhinoceros (Dicerorhinus sumatrensis)

Presenting Author: Swanthana Rekulapally, Marshall University

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P47
A new molecular signature approach for prediction of driver cancer pathways from transcriptional data

Presenting Author: Boris Reva, Icahn School of Medicine at Mount Sinai

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P48
The Affinity Data Bank for biophysical analysis of regulatory sequences

Presenting Author: Todd Riley, University of Massachusetts Boston

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P49
Modeling heterogeneous cell populations using Boolean networks

Presenting Author: Brian Ross, University of Colorado

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P50
A new approach for prediction of molecular signatures of outcome in cancer

Presenting Author: Dmitry Rykunov, Icahn School of Medicine at Mount Sinai

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P51
SCNIC: Finding and Summarizing Modules of Correlated Observations

Presenting Author: Michael Shaffer, University of Colorado - Denver

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P52
Automated Optimal Design of Voltage Clamp Protocols to Study Sodium Channel Kinetics Using a Minimal Cardiac Ion Channel Model

Presenting Author: Matthew Shotwell, Vanderbilt University Medical Center

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P53
Intelligent 3D Cryo-EM Image Analysis for Next Generation Biomedicine

Presenting Author: Dong Si, University of Washington Bothell

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P54
Networks in Systems Immunology

Presenting Author: Janet Siebert, University of Colorado Denver

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P55
Differentiating between Authentic and Cryptic 5' Splice Sites

Presenting Author: Kiruthika Sivaraman, San Jose State University

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P56
The RGD PhenoMiner Database and Tool

Presenting Author: Jennifer Smith, Medical College of Wisconsin

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P57
Who wants to quit: Characteristics and Prediction of Smokers Interested in Quitting Tobacco Use

Presenting Author: Andrey Soares, University of Colorado

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P58
Analysis of Tobacco Users Admitted to Intensive Care Units

Presenting Author: Andrey Soares, University of Colorado School of Medicine

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P59
Network Based Analytics for Down Stream Genomics

Presenting Author: nahil sobh, Carle R. Woess Institute for Genomic Biology

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P60
GPU-Accelerated Identification of Differential Genetic Dependency

Presenting Author: Gil Speyer, The Translational Genomics Research Institute

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P61
Knowledge-based Analysis and Interpretation of Genome Wide Association Studies

Presenting Author: Laura Stevens, University of Colorado, Anschutz Medical Campus

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P62
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Presenting Author: Jaclyn N Taroni, University of Pennsylvania Perelman School of Medicine

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P63
Using KaBOB to find novel adverse drug-drug interactions

Presenting Author: Ignacio Tripodi, University of Colorado, Boulder

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P64
InterViewer, a new Cytoscape-based viewer that displays interactions between selected sets of proteins

Presenting Author: Marek Tutaj, Medical College of Wisconsin

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P65
Estimating Local and Regional Effects on Substitution Rates

Presenting Author: Aaron Wacholder, University of Colorado Anschutz Medical Campus

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P66
Methods for Inferring Consensus Across Tumor Phylogenetic Histories

Presenting Author: Allie Warren, Carleton College

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P67
Integration of protein families, localizations, and modifications in a biological knowledge base

Presenting Author: Elizabeth White, University of Colorado Denver, Anschutz

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P68
De novo protein structure prediction by big data and deep learning

Presenting Author: Sheng Wang, Toyota Technological Institute at Chicago

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P69
Rank Aggregation for Feature Scoring and Selection

Presenting Author: Tara Yankee, University of Connecticut

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P70
Bootstrapping estimates of stability for clusters, observations and model selection

Presenting Author: Han Yu, University at Buffalo

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P71
The hetnet awakens at https://neo4j.het.io

Presenting Author: Daniel Himmelstein, University of Pennsylvania

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