ORAL PRESENTATIONS



OP01
Comparative Genomics and Alliance for Genome Resources

Presenting Author: Judith Blake, Jackson Laboratory

OP02
RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting

Presenting Author: Travis Jensen, The Emmes Corporation

OP03
Confounds in biomedical natural language processing

Presenting Author: KEVIN COHEN, University of Colorado School of Medicine

OP04
Integrated molecular and clinical analysis for understanding human disease relationships

Presenting Author: Winston Haynes, Stanford University

OP05
Continuous integration for ensuring interoperability of the Open Biomedical Ontologies

Presenting Author: William Baumgartner, University of Colorado Anschutz Medical Campus

OP06
Classification of glioblastoma subtypes by integrating genomic and histopathological image features with probabilistic graphical models

Presenting Author: Dimitris Manatakis, University of Pittsburgh

OP07
MPEG-G the emerging standard for genomic data compression

Presenting Author: Mikel Hernaez, University of Illinois

OP08
Physical aspects of the -helix and their implications towards amyloidal tendency

Presenting Author: Simcha Srebnik, Technion - Israel Institute of Technology

OP09
A Novel Systematic Analysis of ALDH Isozyme Specificity in Head and Neck Squamous Cell Carcinoma

Presenting Author: Brian Jackson, University of Colorado Anschutz Medical Campus

OP10
Building a Systems-level model of the immune response to Salmonella infection

Presenting Author: Marta Andres-Terre, Stanford University

OP11
Development of a statistical model of the genetics of maternal-fetal dyads in neonatal abstinence syndrome

Presenting Author: James Denvir, Marshall University

OP12
Tracing the Innate Genetic Evolution and Spatial Heterogeneity in Treatment Naïve Lung Cancer Lesions

Presenting Author: Jihye Kim, University of Colorado Anschutz Medical Campus

OP13
Locating sites of ribonucleotide incorporation in RNase H2-deficient cells

Presenting Author: Alli Gombolay, Georgia Institute of Technology

OP14
Increasing flexibility of Laboratory Information Management System (LIMS) through extension of relational database model with NoSQL

Presenting Author: Marcin Domagalski, University of Virginia

OP15
Correcting for non-random fragmentation allows for more accurate estimation of relative abundance in NGS metagenomic data.

Presenting Author: Elmar Pruesse, University of Colorado Denver

OP16
Assembly-free metagenomic analyses on distributed computational platforms

Presenting Author: Anna Paola Carrieri, IBM Research UK

OP17
Discovering the Contribution of the Gut Microbiome to the Plasma Metabolome

Presenting Author: Michael Shaffer, University of Colorado Denver Anschutz Medical Campus

OP18
Statistical Integration and Feature Selection for Candidate Biomarker Discovery

Presenting Author: Bobbie-Jo Webb-Robertson, Pacific Northwest National Laboratory

OP19
DySE – Dynamic System Explanation Framework, Application in Cancer

Presenting Author: Natasa Miskov-Zivanov, University of Pittsburgh

OP20
A systems biology approach using cell-to-cell heterogeneity to map cell fate decisions in developmental processes

Presenting Author: Jens Preussner, Max Planck Institute for Heart and Lung Research

OP21
Enabling Deep Learning on Structural Biological Data

Presenting Author: Tom Corcoran, Lawrence Berkeley National Laboratory

OP22
Unsupervised discovery of phenotype specific heterogeneous gene networks

Presenting Author: Jenny Shi, University of Colorado AMC

OP23
Dissimilarity Matrix Based Clustering for Phylogenetic Analysis

Presenting Author: Tara Eicher, The Ohio State University

OP24
Automated Biomedical Text Classification with Research Domain Criteria

Presenting Author: Mohammad Anani, Montana State University

OP25
Unsupervised methods for lexical ambiguity in concept normalization

Presenting Author: Negacy Hailu, University of Colorado

OP26
A Comparison of Viral Identification Techniques in Longitudinal Metagenomic Datasets

Presenting Author: Cody Glickman, University of Colorado Anschutz Medical Campus

OP27
A Pilot Systematic Genomic Comparison of Recurrence Risks of Hepatitis B Virus-associated Hepatocellular Carcinoma with low and high degree of liver fibrosis

Presenting Author: Seungyeul Yoo, Icahn School of Medicine at Mount Sinai

OP28
Identifying and Annotating Uninvestigated Preeclampsia-Related Genes Using Linked Open Biomedical Data

Presenting Author: Tiffany Callahan, University of Colorado Denver Anschutz Medical Campus

OP29
Novel Approaches for Accuracy Assessment of 3D Chromatin Configuration Reconstructions

Presenting Author: Mark Segal, University of California San Francisco

OP30
Codon Aversion: An alignment-free method to recover phylogenies

Presenting Author: Justin Miller, Brigham Young University

OP31
Isoform level differential network analysis: A proffer alternative for identifying cancer markers

Presenting Author: Manoj Kandpal, Northwestern University

OP32
Non-B DNA Predictor: A Web Application for Identifying Potential Intramolecular Non-B DNAs

Presenting Author: Hannah Ajoge, Western University

OP33
IMPACT Web Portal: An Oncology Database Integrating Molecular Profiles with Actionable Therapeutics from Next Generation Sequencing Data

Presenting Author: Jennifer Hintzsche, University of Colorado Anschutz Medical Campus

OP34
Exploring Frequented Regions in Pan-Genomic Graphs

Presenting Author: Brendan Mumey, Montana State University

OP35
TOBIAS - Transcription factor Occupancy prediction By Investigation of ATAC-seq Signals

Presenting Author: Mario Looso, Max Planck Institute for Heart and Lung Research

OP36
Integrating Protein Localization Information in Signaling Pathway Reconstructions

Presenting Author: Anna Ritz, Reed College

OP37
Reducing the footprint of mass spectrometry data

Presenting Author: Idoia Ochoa, University of Illinois at Urbana-Champaign

OP38
Meeting today's challenging computational biology demands by integrating a focused IT team into the research process

Presenting Author: Dan Timmons, University of Colorado Boulder/BioFrontiers Institute

OP39
Predicting Adverse Events Associated with Kinase Inhibitors from Clinical Drug Trials.

Presenting Author: Ilyssa Summer, University of Colorado Anschutz Medical Campus

OP40
Characterization of the mechanism of drug-drug interactions from PubMed

Presenting Author: Feng Cheng, University of South Florida