Poster Session List


P01
DendroShiny: A Dynamic Visualization Tool for the Analysis of Genome Wide Gene Expression Data

Presenting Author: Natalia Acevedo Luna, Iowa State University

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P02
Automated Biomedical Text Classification with Research Domain Criteria

Presenting Author: Mohammad Anani, Montana State University

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P03
Building a Systems-level model of the immune response to Salmonella infection

Presenting Author: Marta Andres-Terre, Stanford University

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P04
The first de novo genome assembly of the hemiclonal live bearing Poeciliid fish, Poeciliopsis monacha

Presenting Author: Talon Arbuckle, Northwest Indian College

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P05
GEOcurate: Enabling biologists to easily curate annotations from GEO datasets

Presenting Author: Avery Bell, Brigham Young University

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P06
Using Cross-Species Analysis to investigate mechanisms of chemotherapy agents

Presenting Author: Judith Blake, Jackson Laboratory

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P07
Estimating the lower bound of the known unknowns in the scientific literature

Presenting Author: Mayla Boguslav, University of Colorado Anschutz Medical Campus

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P08
SOMAscan® Proteomic Biomarker Discover Platform and its Applications to Diagnostic Medicine

Presenting Author: Leigh Alexander, SomaLogic, Inc.

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P09
Identifying and Annotating Uninvestigated Preeclampsia-Related Genes Using Linked Open Biomedical Data

Presenting Author: Tiffany Callahan, University of Colorado Denver Anschutz Medical Campus

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P10
Host phenotype prediction from differentially abundant microbes

Presenting Author: Anna Paola Carrieri, IBM Research UK

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P11
Three cellular-scale simulations of drug delivery in tumors

Presenting Author: Kimberly Kanigel Winner, University of Colorado School of Medicin

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P12
Characterization of the mechanism of drug-drug interactions from PubMed

Presenting Author: Feng Cheng, University of South Florida

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P13
Pathway Networks Generated from Human Disease Phenome

Presenting Author: Ann Cirincione, University of Maryland, Baltimore County

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P14
Development of a statistical model of the genetics of maternal-fetal dyads in neonatal abstinence syndrome

Presenting Author: James Denvir, Marshall University

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P15
Increasing flexibility of Laboratory Information Management System (LIMS) through extension of relational database model with NoSQL

Presenting Author: Marcin Domagalski, University of Virginia

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P16
Dissimilarity Matrix Based Clustering for Phylogenetic Analysis

Presenting Author: Tara Eicher, The Ohio State University

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P17
A Comparison of Viral Identification Techniques in Longitudinal Metagenomic Datasets

Presenting Author: Cody Glickman, University of Colorado Anschutz Medical Campus

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P18
Locating sites of ribonucleotide incorporation in RNase H2-deficient cells

Presenting Author: Alli Gombolay, Georgia Institute of Technology

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P19
Integrated molecular and clinical analysis for understanding human disease relationships

Presenting Author: Winston Haynes, Stanford University

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P20
Modular genomic variant calling workflow in Swift/T

Presenting Author: Jacob Heldenbrand, University of Illinois at Urbana-Champaign

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P21
The regulatory power of lincRNAs

Presenting Author: Mikel Hernaez, University of Illinois at Urbana-Champaign

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P22
IMPACT Web Portal: An Oncology Database Integrating Molecular Profiles with Actionable Therapeutics from Next Generation Sequencing Data

Presenting Author: Jennifer Hintzsche, University of Colorado Anschutz Medical Campus

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P23
A method of reproducing sample clustering by gene-expression with a panel of few genes

Presenting Author: Christina Horr, University of Notre Dame

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P24
Antimicrobial Food Additives Influence the Composition and Diversity of the Human Gut Microbiota: Studies in Germ-Free Mice

Presenting Author: Tomas Hrncir, Czech Academy of Sciences

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P25
Simulation study of two- class classification algorisms for focused metabolomics.

Presenting Author: Akira Imaizumi, Ajinomoto, CO., Inc.

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P26
m-NGSG: A modified n-gram and skip-gram-based feature generation model from primary protein sequence.

Presenting Author: S M Ashiqul Islam, Baylor University

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P27
Efficiently generating unique vector permutations in R

Presenting Author: Samantha Jensen, Brigham Young University

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P28
Tracing the Innate Genetic Evolution and Spatial Heterogeneity in Treatment Naïve Lung Cancer Lesions

Presenting Author: Jihye Kim, University of Colorado Anschutz Medical Campus

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P29
SALSA: Systematic Alternative Splicing Analysis Pipeline for Detecting Cryptic 3’ Splice Site Usage in SF3B1 Mutant Cancer RNA-seq

Presenting Author: Hyunmin Kim, University of Colorado Denver School of Medicine

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P30
Not so noisy after all – large meta-analysis of annotated human microarray data reveals strong evidence for the alternative hypothesis in gene expression studies.

Presenting Author: Katja Koeppen, Geisel School of Medicine at Dartmouth

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P31
Application of Machine Learning based classification approaches to Identify HAT Inhibitors as Potent Anticancer Agents

Presenting Author: SHAGUN KRISHNA, CSIR-Central Drug Research Institute

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P32
DeSigN: Exploiting Gene Expression Signatures to Identify Potential Therapeutic Agents

Presenting Author: Bernard Lee, Cancer Research Malaysia

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P33
Linking Genes to Cell Function

Presenting Author: Marc Maldaver, Michigan State University

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P34
Classification of glioblastoma subtypes by integrating genomic and histopathological image features with probabilistic graphical models

Presenting Author: Dimitris Manatakis, University of Pittsburgh

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P35
Optimal equation selection for graphlet counting

Presenting Author: Ine Melckenbeeck, Ghent University

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P36
Codon Aversion: An alignment-free method to recover phylogenies

Presenting Author: Justin Miller, Brigham Young University

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P37
DySE – Dynamic System Explanation Framework, Application in Cancer

Presenting Author: Natasa Miskov-Zivanov, University of Pittsburgh

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P38
An Interactome Analyses to Reveal Chaperone Proteins as Effective Drug Targets against Salmonellosis

Presenting Author: SHAMA MUJAWAR, SUNWAY UNIVERSITY

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P39
A Bioinformatic Framework to Assess the Transcriptomic Response of Species to Environmental Toxins

Presenting Author: Siavash Nazari, University of Guelph

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P40
Reducing the footprint of mass spectrometry data

Presenting Author: Idoia Ochoa, University of Illinois at Urbana-Champaign

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P41
Identifying the molecular phenotypes of urothelial carcinoma of the bladder

Presenting Author: Oluwole Olaku, Morgan State University

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P42
The use of signature genes and motifs to improve annotations of viruses

Presenting Author: Dnyanada Pande, San Diego State University

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P43
National Center for Genome Analysis Support (NCGAS) as a platform for metagenomic analysis

Presenting Author: Bhavya Papudeshi, Indiana University

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P44
Using functional interaction networks as prior knowledge in expression epistasis network centrality feature selection improves classification and enrichment of biologically relevant pathway for major depressive disorder

Presenting Author: Saeid Parvandeh, University of Tulsa

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P45
Knowtator: A graphical text annotation plugin for Protegé

Presenting Author: Harrison Pielke-Lombardo, University of Colorado

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P46
Quality Assurance of Bioinformatics Software

Presenting Author: Morteza Pourreza Shahri, Montana State University

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P47
Evaluating the Effectiveness of Using Literature Features for Automated Protein Phenotype Prediction using PHENOstruct

Presenting Author: Morteza Pourreza Shahri, Montana State University

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P48
A rank-based hypergeometric test to extend GSEA for discerning specific effects of small molecule treatment

Presenting Author: Rani Powers, University of Colorado Anschutz Medical Campus

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P49
A systems biology approach using cell-to-cell heterogeneity to map cell fate decisions in developmental processes

Presenting Author: Jens Preussner, Max Planck Institute for Heart and Lung Research

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P50
Correcting for non-random fragmentation allows for more accurate estimation of relative abundance in NGS metagenomic data.

Presenting Author: Elmar Pruesse, University of Colorado Denver

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P51
Integrating Protein Localization Information in Signaling Pathway Reconstructions

Presenting Author: Anna Ritz, Reed College

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P52
Design and evaluation of peptides that recognize the Tn antigen.

Presenting Author: Daniel Armando Romero Frenchy, National University of Colombia

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P53
Measuring chromosome conformation by fluorescence microscopy

Presenting Author: Brian Ross, University of Colorado

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P54
Discovering the Contribution of the Gut Microbiome to the Plasma Metabolome

Presenting Author: Michael Shaffer, University of Colorado Denver Anschutz Medical Campus

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P55
Unsupervised discovery of phenotype specific heterogeneous gene networks

Presenting Author: Jenny Shi, University of Colorado AMC

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P56
Visual analysis of disease-associated multi-omics relationships in the human gut

Presenting Author: Janet Siebert, University of Colorado Denver

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P57
Knowledge Network-guided analysis of genomics data on the Cloud

Presenting Author: Nahil Sobh, University of Illinois

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P58
Harmonization and Preparation of Clinical Data using Shiny

Presenting Author: Laura Stevens, University of Colorado, Anschutz Medical Campus

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P59
Predicting Adverse Events Associated with Kinase Inhibitors from Clinical Drug Trials.

Presenting Author: Ilyssa Summer, University of Colorado Anschutz Medical Campus

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P60
Improved prediction of functionally important residues through phylogenetic analysis

Presenting Author: Haiming Tang, Baylor College of Medicine

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P61
“Parent” of duplication gene pairs tends to be more conserved than “daughter” copy, and is more likely to be further duplicated

Presenting Author: Haiming Tang, University of Southern California

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P62
Meeting today's challenging computational biology demands by integrating a focused IT team into the research process

Presenting Author: Dan Timmons, University of Colorado Boulder/BioFrontiers Institute

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P63
Knowledge-based chemical relation extraction

Presenting Author: Ignacio Tripodi, University of Colorado, Boulder

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P64
Statistical Integration and Feature Selection for Candidate Biomarker Discovery

Presenting Author: Bobbie-Jo Webb-Robertson, Pacific Northwest National Laboratory

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P65
PATTERN RECOGNITION IN FULL-TEXT BIOMEDICAL ARTICLES

Presenting Author: Elizabeth White, University of Colorado-Denver

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P66
MeTeOR: a Literature Network for Hypothesis Generation and Precision Medicine

Presenting Author: Stephen Wilson, Baylor College of Medicine

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P67
A comparison of error correction algorithms in T-cell receptor sequencing experiments

Presenting Author: Nicolle Witte, University of Colorado Anschutz

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P68
Abstract Withdrawn


P69
A Pilot Systematic Genomic Comparison of Recurrence Risks of Hepatitis B Virus-associated Hepatocellular Carcinoma with low and high degree of liver fibrosis

Presenting Author: Seungyeul Yoo, Icahn School of Medicine at Mount Sinai

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P70
Inference of protein networks and protein function in nontuberculous mycobacterial pathogens

Presenting Author: Diana Zajac, University of Colorado, Denver

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P71
Enabling Deep Learning on Structural Biological Data

Presenting Author: Rafael Zamora, Lawrence Berkeley National Laboratory

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P72
Genotype-phenotype Association Discovery through Accurately Dissecting Phenotype-associated Genetic Causal Effects

Presenting Author: Patrick Xuechun Zhao, Noble Research Institute

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P73
Utilizing DNA methylation for Genome Annotation through Deep Learning

Presenting Author: Gregory Zynda, Texas Advanced Computing Center

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P74
Transcriptional regulatory network inference from gene expression and chromatin accessibility measurements

Presenting Author: Ronald Taylor, Cincinnati Children's Hospital Medical Center

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