ORAL PRESENTATIONS
OP-01
Goals, Roles, and Watering holes: A playbook for the leading edge of team science
Presenting Author: Julie McMurry, University of Colorado, Anschutz Medical Campus
OP-02
Realizing the potential of secure and decentralized harmonization of clinical and genomics data for precision medicine
Presenting Author: Ahmed Elhussein, Columbia University
OP-03
iAtlas: an Open-Source, Interactive Portal and Platform for Immuno-Oncology Research
Presenting Author: James Eddy, Sage Bionetworks
OP-04
Tissue-adjusted pathway analysis of cancer
Presenting Author: Rob Frost, Dartmouth College
OP-05
Alignment-free phylogenetic method unveils the pan-mammalian regulatory motif adaptations underlying extended lifespan
Presenting Author: Elysia Saputra, University of Pittsburgh
OP-06
A robust computational framework to benchmark spatiotemporal trajectory association analysis in single-cell spatial transcriptomics
Presenting Author: Fan Zhang, University of Colorado School of Medicine
OP-07
LochNESS: a novel statistic to quantify sample specific effects in single-cell data based on k-NN graphs
Presenting Author: Xingfan Huang, University of Washington
OP-08
C3PO: Combined polygenic protein prediction in oncology
Presenting Author: Matthew Bailey, Brigham Young University
OP-09
Sex specific genetic architecture of childhood asthma
Presenting Author: Amelie Fritz, Technical Universaity Denmark
OP-10
An efficient not-only-linear correlation coefficient based on machine learning
Presenting Author: Milton Pividori, University of Pennsylvania
OP-11
Survival-based Gene Set Enrichment Analysis
Presenting Author: Jeffrey Thompson, University of Kansas Medical Center
OP-12
How do you build a data commons? A case study for Down Syndrome
Presenting Author: Monica Munoz-Torres, University of Colorado Anschutz Medical Campus
OP-13
Leveraging edge computing for workflow tracking and management to improve academic and healthcare security, efficiency, and auditability
Presenting Author: Caylin Hickey, University of Kentucky
OP-14
Systematic study of human diseases using graph signal processing on gene expression datasets
Presenting Author: Renming Liu, Michigan State University
OP-15
GeneplexusZoo: Utilizing network information across species to improve supervised gene classification
Presenting Author: Christopher Mancuso, University of Colorado-Denver Anschutz Medical Campus
OP-16
Privacy-preserving prediction of phenotypes from genotypes using homomorphic encryption
Presenting Author: Annie Choi, Columbia University
OP-17
Leveraging public transcriptome data with ML to infer pan-body age- and sex-specific molecular phenomena
Presenting Author: Kayla Johnson, Michigan State University
OP-18
A comprehensive knowledgebase of known and predicted genetic variants associated with COVID-19 severity
Presenting Author: Meltem Ece Kars, Icahn School of Medicine at Mount Sinai, Institute for Personalized Medicine
OP-19
Abyssinian to Zebu: Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO)
Presenting Author: Kathleen Mullen, University of Colorado Anschutz Medical Campus
OP-20
Binding sites prediction of proteins
Presenting Author: Zhong-Ru Xie, University of Georgia
OP-21
On Language Models, Medicine, and Factuality
Presenting Author: Sagi Shaier, CU Boulder
OP-22
Metabolites and Markers of Endothelial Dysfunction Help Understand Sepsis Mortality Risk
Presenting Author: Sarah McGarrity, Brigham and Women’s Hospital and Harvard Medical School
OP-23
A comprehensive analysis of the reusability of public omics data across 2.8 million research publications
Presenting Author: Mohammad Vahed, University of Southern California
OP-24
Creating an Ignorance-Base: Exploring known unknowns in the scientific literature
Presenting Author: Mayla Boguslav, University of Colorado Anschutz Medical Campus
OP-25
Identify genes associated with gastrointestinal tract adaptation using Evolink
Presenting Author: Xiaofang Jiang, NIH/NLM
OP-26
Development and validation of an explainable machine learning-based prediction model for drug-food constituent interactions from chemical structures
Presenting Author: Quang Hien Kha, Taipei Medical University
OP-27
Metrics and software for assessing microbiota engraftment following Fecal Microbiota Transplant
Presenting Author: Chloe Herman, Northern Arizona University
OP-28
Exploration of 5'UTR Variation in a Clinical Workflow Evaluating Undiagnosed Rare Disease Patients
Presenting Author: Eric Klee, Mayo Clinic
OP-29
An ML framework for precision medicine: from patient-specific gene networks to translational animal models
Presenting Author: Hao Yuan, Michigan State University
OP-30
Identifying alterations associated with aggressiveness in prostate cancer molecular subtypes
Presenting Author: Michael Orman, University of Colorado
OP-31
Rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing
Presenting Author: Serghei Mangul, University of Southern California
OP-32
How tRNA pools and ramp sequences regulate protein and transcript levels associated with disease
Presenting Author: Justin Miller, University of Kentucky
OP-33
Finding Long COVID: Topic modeling of post-infection trends in patient EHR profiles
Presenting Author: Shawn ONeil, University of Colorado
OP-34
Language representation models based on metadata identify relevant datasets in Gene Expression Omnibus
Presenting Author: Grace Salmons, Brigham Young University
OP-35
Using knowledge graphs to infer gene expression in plants
Presenting Author: Anne Thessen, University of Colorado Anschutz
OP-36
Fast, flexible and safe sequence assembly for RNA and beyond
Presenting Author: Brendan Mumey, Montana State University
OP-37
Visualization and Exploration of Survival Prediction Model Explanations
Presenting Author: Cartsen Görg, Colorado School of Public Health
OP-38
Double-strand DNA breaks: Quantitative mapping and computational modeling of mechanisms.
Presenting Author: Maga Rowicka, University of Texas Medical Branch
OP-39
Novel enzyme families among artificial intelligence-based protein structure models
Presenting Author: Krzysztof Pawlowski, University of Texas Southwestern Medical Center
OP-40
The Mondo Disease Ontology: A Standardized Disease Terminology of Human and Animal Diseases
Presenting Author: Sabrina Toro, University of Colorado, Anschutz Medical Campus
OP-41
The ability to classify patients based on gene-expression data varies by algorithm and performance metric
Presenting Author: Stephen Piccolo, Brigham Young University