Poster Session List
ClaID: a Rapid Method of Clade-Level Identification of the Multidrug Resistant Human Fungal Pathogen Candida auris
Presenting Author: Pavitra S, The Institute of Mathematical Sciencestop
P01
Effects of Rurality on Cancer Risk Factors Using Multiscale-Geographical-Weighted-Regression-Model
Presenting Author: Jonah Amponsah, University of Kansas Medical Centertop
P02
Highly accurate merging of overlapping paired-end next-generation sequencing reads
Presenting Author: Shofi Andari, Iowa State Universitytop
P03
Development of SpliceCluster: A New Tool to Discriminate Complexity in Similar Immune Cell Subsets in Single-Cell RNA Sequencing
Presenting Author: Jared Andersen, University of Utahtop
P04
A convolutional neural network based tool for predicting protein AMPylation sites from binary profile representation
Presenting Author: Sayed Mehedi Azim, Rutgers Universitytop
P05
Survival outcomes based on T-cell receptor CDR3 chemical complementarity in ovarian serous cystadenocarcinoma
Presenting Author: Vayda Barker, University of South Florida, Morsani College of Medicinetop
P06
Identifying Technical Variation Between Replicate Samples of 16S rRNA Sequencing Data
Presenting Author: Angela Sofia Burkhart Colorado, University of Colorado at Anschutz Medical Campustop
P07
Using Huffman codes and n-grams to compress tabular data
Presenting Author: Maren Callaway, Brigham Young Universitytop
P08
Metformin is Associated with Reduced COVID-19 Severity in Patients with Prediabetes
Presenting Author: Lauren Chan, Oregon State Universitytop
P09
Privacy-preserving prediction of phenotypes from genotypes using homomorphic encryption
Presenting Author: Annie Choi, Columbia Universitytop
P10
Easy NanoString Gene Expression Analysis with the NanoTube
Presenting Author: Caleb Class, Butler Universitytop
P11
ExtCodonIslands: a tool for identifying and visualizing regions vulnerable to deleterious synonymous codon mutations
Presenting Author: Matthew Cloward, Brigham Young Universitytop
P12
REVEALING POTENTIAL MECHANISMS FOR EHLERS DANLOS SYNDROME USING KNOWLEDGE GRAPHS
Presenting Author: Katherina Cortes, University of Colorado Anschutztop
P13
Domain generalization for prediction from pan-cancer gene expression
Presenting Author: Jake Crawford, University of Pennsylvaniatop
P14
Inference of bacterial pathogen load in US rivers from landscape-scale shotgun metagenomic sequencing
Presenting Author: Alyssa Cruz, University of Colorado Denvertop
P15
Equine tissue atlas of small non-coding RNA expression
Presenting Author: Jonah Cullen, University of Minnesotatop
P16
Non-model de novo assemblies: the complexities of sequencing and assembling a marine invertebrate genome and transcriptome
Presenting Author: Benjamin Daniels, California Polytechnic State Universitytop
P17
Prediction of gene expression using interpretable chromatin accessibility features
Presenting Author: Natalie Davidson, CU Anschutztop
P18
Accurately Predicting AntiCancer Peptide using an ensemble of heterogeneously Trained Classifiers
Presenting Author: Iman Dehzangi, Rutgers Universitytop
P19
PROSTIMATE: A prostate cancer-specific predictor of tumor purity
Presenting Author: Cailin Deiter, University of Coloradotop
P20
iAtlas: an Open-Source, Interactive Portal and Platform for Immuno-Oncology Research
Presenting Author: James Eddy, Sage Bionetworkstop
P21
Realizing the potential of secure and decentralized harmonization of clinical and genomics data for precision medicine
Presenting Author: Ahmed Elhussein, Columbia Universitytop
P22
Prioritizing mechanistic targets in chemotherapy resistant muscle-invasive bladder cancer
Presenting Author: Lily Elizabeth Feldman, University of Colorado Anschutz Medical Campustop
P23
Disentangling Information Flow in the Visual System
Presenting Author: Nicholas Garcia, University of Coloradotop
P24
Integrating Molecular Data into Knowledge Graph Embeddings to Predict Adverse Drug Reactions in Trisomy 21
Presenting Author: Lucas Gillenwater, University of Colorado Anschutz Medical Campustop
P25
Kable: A tool for bacterial genome comparison with metadata
Presenting Author: Jo Hendrix, University of Colorado at Anschutztop
P26
Deconvolution of cancer data: best practices for bulk and single-cell RNA-seq
Presenting Author: Ariel Hippen, University of Pennsylvaniatop
P27
Tradeoffs between predictive performance and execution for multiple classifier systems
Presenting Author: Eliza Homer, Brigham Young Universitytop
P28
Interactive web-based exploration of single-cell atlases of millions of cells
Presenting Author: Xingfan Huang, University of Washingtontop
P29
Identify genes associated with gastrointestinal tract adaptation using Evolink
Presenting Author: Xiaofang Jiang, NIH/NLMtop
P30
Leveraging public transcriptome data with ML to infer pan-body age- and sex-specific molecular phenomena
Presenting Author: Kayla Johnson, Michigan State Universitytop
P31
Exploring the Feasibility of Automating Biocuration for Neuropharmacology
Presenting Author: Indika Kahanda, University of North Floridatop
P32
Do Custom Regional DNA Barcode Databases Lead to More Efficient Specimen ID?
Presenting Author: Michael Kerr, Brigham Young Universitytop
P33
OrbiSeq-L: an Aid to Diagnosis to Confirm a Positive Low Dose CT Scan
Presenting Author: Nicholas Kinney, Orbit Genomicstop
P34
Exploration of 5'UTR Variation in a Clinical Workflow Evaluating Undiagnosed Rare Disease Patients
Presenting Author: Eric Klee, Mayo Clinictop
P35
Discover Higher-order Relationship between Molecular Profiles in COPD Patients with Novel Multi-omics Network Inference Pipeline for Hypergraph
Presenting Author: Weixuan Liu, University of Colorado Anschutz Medical Campustop
P36
Systematic study of human diseases using graph signal processing on gene expression datasets
Presenting Author: Renming Liu, Michigan State Universitytop
P37
GeneplexusZoo: Utilizing network information across species to improve supervised gene classification
Presenting Author: Christopher Mancuso, University of Colorado-Denver Anschutz Medical Campustop
P38
Rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing
Presenting Author: Serghei Mangul, University of Southern Californiatop
P39
Metabolites and Markers of Endothelial Dysfunction Help Understand Sepsis Mortality Risk
Presenting Author: Sarah McGarrity, Brigham and Women’s Hospital and Harvard Medical Schooltop
P40
Integrative omic profiling of human pulmonary vascular cells in response to hypoxia
Presenting Author: Sarah McGarrity, Brigham and Women’s Hospital and Harvard Medical Schooltop
P41
Goals, Roles, and Watering holes: A playbook for the leading edge of team science
Presenting Author: Julie McMurry, University of Colorado, Anschutz Medical Campustop
P42
How tRNA pools and ramp sequences regulate protein and transcript levels associated with disease
Presenting Author: Justin Miller, University of Kentuckytop
P43
Abyssinian to Zebu: Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO)
Presenting Author: Kathleen Mullen, University of Colorado Anschutz Medical Campustop
P44
How do you build a data commons? A case study for Down Syndrome
Presenting Author: Monica Munoz-Torres, University of Colorado Anschutz Medical Campustop
P45
Safety Signal Detection with Bayesian Hierarchical Models
Presenting Author: Lisa Neums, Boehringer Ingelheim Pharmaceuticals, Inc.top
P46
Speciel: A New Tool to Identify Species-Defining SNPs and its Application in Cutthroat Trout
Presenting Author: Alyssa Nitz, Brigham Young Universitytop
P47
Detection of outlier methylation in rare genetic disease with novel Bioconductor package BOREALIS
Presenting Author: Gavin Oliver, Mayo Clinictop
P48
Finding Long COVID: Topic modeling of post-infection trends in patient EHR profiles
Presenting Author: Shawn ONeil, University of Coloradotop
P49
A Comprehensive Bioinformatics Pipeline for Preparing Observational Data for Machine Learning Analysis
Presenting Author: Alena Orlenko, Cedars Sinai Medical Centertop
P50
Identifying alterations associated with aggressiveness in prostate cancer molecular subtypes
Presenting Author: Michael Orman, University of Coloradotop
P51
Evaluating the effectiveness of restoration efforts in island ecosystems via UAV obtained imagery and manual classification
Presenting Author: Haden Penrod, Brigham Young Universitytop
P52
An efficient not-only-linear correlation coefficient based on machine learning
Presenting Author: Milton Pividori, University of Pennsylvaniatop
P53
Comparison of Liver Enzyme Models for Polygenic Risk Score
Presenting Author: Robert Plant, Galatea Biotop
P54
A trans ancestry genomics based approach to study the interplay between the immune system, infectious type, and HLA type, ancestry and sepsis outcome
Presenting Author: Serghei Mangul, University of Southern Californiatop
P55
Language representation models based on metadata identify relevant datasets in Gene Expression Omnibus
Presenting Author: Grace Salmons, Brigham Young Universitytop
P56
Using knowledge graphs to understand microbe-mediated diseases
Presenting Author: Brook Santangelo, University of Colorado Anschutz Medical Campustop
P57
Alignment-free phylogenetic method unveils the pan-mammalian regulatory motif adaptations underlying extended lifespan
Presenting Author: Elysia Saputra, University of Pittsburghtop
P58
SVPred: An integrated framework for structural variant discovery
Presenting Author: Varuni Sarwal, UCLAtop
P59
CytoSnake: Reproducible workflow software for processing cell morphology features fast
Presenting Author: Erik Serrano, University of Colorado, Anschutz Medical Campustop
P60
On Language Models, Medicine, and Factuality
Presenting Author: Sagi Shaier, CU Bouldertop
P61
Integrated regulatory and metabolic networks for the prioritization of therapeutic targets in the tumor microenvironment
Presenting Author: Tiange Shi, University at Buffalotop
P62
Using Computer vision pipeline to quantify behavior in cichlids
Presenting Author: Breanna Shi, Georgia Institute of Technologytop
P63
Breast cancer patients from the Midwest region of the United States have reduced levels of short-chain fatty acid-producing gut bacteria
Presenting Author: Rachel Shrode, Department of Informatics, University of Iowatop
P64
Methylation Site Prediction Using a Deep Convolutional Neural Network
Presenting Author: Austin Spadaro, Rutgers Universitytop
P65
Figures in biological journal articles are often unfriendly to people with color vision deficiencies
Presenting Author: Harlan Stevens, Brigham Young Universitytop
P67
Reducing underspecification in breast cancer subtyping by ranking performance on unshifted versus shifted datasets.
Presenting Author: Ella Thomas, Cal Poly, San Luis Obispotop
P68
Survival-based Gene Set Enrichment Analysis
Presenting Author: Jeffrey Thompson, University of Kansas Medical Centertop
P69
Benchmarking image analysis pipelines to discover an NF1 genotype biomarker from Schwann cell morphology
Presenting Author: Jenna Tomkinson, University of Colorado Anschutz Medical Campustop
P70
The Mondo Disease Ontology: A Standardized Disease Terminology of Human and Animal Diseases
Presenting Author: Sabrina Toro, University of Colorado, Anschutz Medical Campustop
P71
A machine learning approach incorporating germline information improves genotyping of CRISPR-Cas9 gene editing events at single cell resolution
Presenting Author: Matthew Ung, Vor Biopharmatop
P72
A comprehensive analysis of the reusability of public omics data across 2.8 million research publications
Presenting Author: Mohammad Vahed, University of Southern Californiatop
P73
CNV assessments in Neuroblastoma: Loss of MAPT correlates with lower survival probability
Presenting Author: Mallika Varkhedi, University of South Florida College of Medicinetop
P74
Private information leakage in single-cell omics data
Presenting Author: Conor Walker, Columbia University & New York Genome Centertop
P75
Automating microbial taxonomy workflows with PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
Presenting Author: Joe Wirth, Harvey Mudd Collegetop
P76
Ramp Sequences Affected by Single Nucleotide Polymorphisms
Presenting Author: Joseph Wride, Brigham Young Universitytop
P77
Chromosomal structures reveals cell-to-cell variability in single-cell Hi-C data analysis
Presenting Author: Tianchun Xue, University of Tennesseetop
P78
Comparison of differential co-expression networks
Presenting Author: Kuranosuke Yamada, The Jackson Laboratory and Colby Collegetop
P79
An ML framework for precision medicine: from patient-specific gene networks to translational animal models
Presenting Author: Hao Yuan, Michigan State Universitytop
P80
Exploring the Genetic Effects of Investigational Drugs that Block Anticancer Immunity in Mice
Presenting Author: Juliana Yue, Brigham Young Universitytop
P81
A robust computational framework to benchmark spatiotemporal trajectory association analysis in single-cell spatial transcriptomics
Presenting Author: Fan Zhang, University of Colorado School of Medicinetop
P82
Sex specific genetic architecture of childhood asthma
Presenting Author: Amelie Fritz, Technical Universaity Denmarktop
P83
spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape
Presenting Author: Markus Hoffmann, Technical University of Munichtop
P87
Network propagation deciphers the pathogenesis of inflammatory bowel disease in a patient-specific way
Presenting Author: Dezso Modos, Quadram Institute Biosciencetop
P88
Development and validation of an explainable machine learning-based prediction model for drug-food constituent interactions from chemical structures
Presenting Author: Quang Hien Kha, Taipei Medical Universitytop
P89
Connecting Research Results with Biomedical Ignorance-Base to Resolve Literature Knowledge Goals
Presenting Author: Nourah Salem, University of Colorado, Anschutz Medical Campustop