| Submission # | Title | Author(s) |
| 1 | Anti-inflammatory, immune-modulatory and antioxidant effects of date fruit (Phoenix dactylifera) extract in rats treated with AlCl3 | Fawzia Alshubaily and Nadia Osman |
| 2 | Diagnosis of Glioma Tumors Using Circulating Cell-Free DNA | Vikrant Palande, Dorith Raviv-Shay and Milana Frenkel-Morgenstern |
| 3 | Functional and Structutural analysis of the impact of the SNPs in Human Gene SCN8A, In Silion Approach | Nosaiba Elkheir M. Ali, Elaf Ibrahim Osman, Rayan S Ali, Sahar E. E. Mohamed, Fedaa Fathalrahman M, Amin M. Ahmed, Sara Shamat, Sanad Abdalbage Mohammed Abdalsadeg Mohammed, Ashraf Osman Ibrahim and Mohamed A. I. Alfaki |
| 4 | Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis | Sufang Wang, Hui Yang, Chen Zhang, Nu Zhang and Michael Gribskov |
| 5 | Computational Analysis of Functional Coding/Noncoding Single Nucleotide Polymorphisms (SNPs/Indels) in Human NEUROG1 gene | Shimaa Mahalah, Zhoor Hamid, Samah Ibrahim and Shazalia Babiker |
| 6 | A comprehensive analysis of small non-coding RNAs in T-cell prolymphocytic leukemia samples | Leticia G Leon, Fabiënne van Opstal, Steven C. Koetzier, Joyce Schilperoord-Vermeulen, Anton W. Langerak and Stefan J. Erkeland |
| 7 | Pilot microbiome profiling of a pharmaceutical factory reveals influence of workers, water, and soil | Amal Hamdy, Moamen El-Massry, Mona Kashef, Magdy Amin and Ramy Aziz |
| 8 | Using MinION to assist de novo assembly of the Streptococcus agalactiae genome | Tamara Hernández-Beeftink, Hector Rodríguez-Pérez, Ana Díaz-De-Usera, Rafaela González-Montelongo, José M Lorenzo-Salazar, Fabián Lorenzo-Díaz and Carlos Flores |
| 11 | Whole genome sequence of Methicillin-resistant Staphylococcus aureus strain SO-1977 isolated from Sudan | Sofia Ali |
| 13 | Efficient population-scale variant analysis and prioritization with VAPr | Adam Mark, Amanda Birmingham, Carlo Mazzafe, Guorong Xu and Kathleen Fisch |
| 16 | Detection of signatures of translation and ribonucleoprotein particles in evolutionary conserved regions of long non-coding RNAs. | Jorge Ruiz-Orera and M. Mar Albà |
| 18 | Sequencing and annotation of resurrection plant H. rhodopensis cp and mt genomes. | Zdravka Ivanova, Elena Apostolova, Gergana Zahmanova, Evelina Daskalova, Galina Yahubyan, Ivan Minkov and Vesselin Baev |
| 19 | Clustering sRNA-seq data for plant miRNAs de novo annotation. | George Minkov, Valentina Toneva, Ivan Minkov and Vesselin Baev |
| 22 | Assessing the genomic diversity and selection footprints on dromedary camels using full genome sequencing and genotyping-by-sequence approaches | Hussain Bahbahani, Hassan Musa, Eltahir Shuiep, Faisal Al Mathen and Olivier Hanotte |
| 23 | A Novel Association between Lysyl Oxidase (LOX) Gene Polymorphisms and Intracranial Aneurysm in the Korean population | Bong Jun Kim, Young Mi Kim, Jin Pyeong Jeon and Jae Jun Lee |
| 24 | Using RNA-seq and Ribo-seq to understand de novo gene origination in yeast | William Blevins, Xavier Messaguer, Jorge Ruiz-Orera, José Luis Villanueva-Cañas, Bernat Blasco-Moreno, Laura Aviñó-Esteban, Guillem Lopez-Grado Salinas, Lorena Espinar, Juana Díez, Lucas Carey and M. Mar Albà |
| 25 | Inference of genomic spatial organization from single WGBS samples | Emanuele Raineri, Francois Serra, Renee Beekman, Roser Vilarrasa-Blasi, Iñaki Martin-Subero, Marc Marti-Renom, Ivo Gut and Simon Heath |
| 26 | Somatic Variant Calling Benchmarking | Milan Domazet, Sanja Mijalkovic and Aleksandar Makragic |
| 27 | High-throughput characterization of RNA function at single site resolution from mutational interference mapping experiments (MIME) | Maureen Smith, Redmond Smyth, Roland Marquet and Max von Kleist |
| 28 | Improving target sequence information via de novo assembly of RNA-Seq data from closely related species | Julia Söllner, Germán Leparc, Matthias Zwick, Kay Nieselt and Eric Simon |
| 29 | Identification of a single nucleotide insertion associated with antibiotic resistance in Burkholderia pseudomallei | Véronique Sarilar, Charles Chapus, Marine Schnetterle, Olivier Gorgé, Aïda Boughammoura, Fabienne Neulat-Ripoll, Fabrice Biot and Thomas Poyot |
| 30 | Comparison of orthology determination algorithms for RNA-seq phylogenetics | Madison H Hansen and Ward C Wheeler |
| 31 | Efficient large-scale whole genome alignment computation based on the SuperGenome | André Hennig and Kay Nieselt |
| 32 | A workflow for accurate neoantigen discovery using NGS data | Ognjen Milicevic, Vladimir Kovacevic, Ana Mijalkovic Lazic, Nikola Skundric, Nevena Ilic Raicevic, Milica Kojicic and Jack Digiovanna |
| 33 | Next-Generation Sequencing and Network Analysis of Mycobacterium tuberculosis | Sridhar Hariharaputran |
| 34 | Rabix Suite: open-source development project for creating and running computational workflows in Common Workflow Language | Bogdan Gavrilovic |
| 35 | Capturing changes in transcription factor activity with ATAC-Seq | Ignacio Tripodi, Mary Ann Allen and Robin Dowell |
| 37 | Homologous recombination deficiency detection in breast cancer using whole exome sequencing TCGA data | Marko Petkovic, Aleksandra Stevovic, Gavrilo Andric and Stefan Stojanovic |
| 39 | Identifying genomic regions susceptible to systematic sequencing error to improve variant detection | Timothy Freeman, Dennis Wang and Jason Harris |
| 41 | Simultaneous detection and accurate quantification of coding and non-coding RNAs using a single sequencing reaction | Vincent Boivin, Gabrielle Deschamps-Francoeur, Sherif Abou Elela and Michelle Scott |
| 43 | Phylogeny-guided genome assembly method for short nucleotide reads from deep sequencing of mixed microbial samples | Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan and Tommy Tsan-Yuk Lam |
| 46 | Mining of RNA-seq libraries to compute cellular metabolic state | Marcelo Rivas-Astroza and Raúl Conejeros |
| 47 | Identification of micropeptides by characteristic splicing patterns in RNA-seq data | Alexey Mironov, Olga Kalinina, Rory Johnson and Dmitri Pervouchine |
| 50 | Identification of epigenomic features linked to 3D interactions using snapshots of chromatin social networks | Kat Cheung, Vera Pancaldi, Inmaculada Hernandez-Lopez, Laura Castro, Alfonso Valencia, Manolis Papamichos-Chronakis, Lisa Prendergast and Daniel Rico |
| 51 | FASH16S - Fast automated shell based running pipeline for 16S rRNA amplicon NGS data | Balamuralikrishna Jayaprakash, Jussi Paananen, Tarja Pitkänen, Pirkka V. Kirjavainen and Martin Täubel |
| 54 | Genomic locus-locus interaction networks to identify non-coding pathogenic mutations in immune disorders | Maninder Heer, Sophie Hambleton and Daniel Rico |
| 57 | METAGENOMIC STUDY OF ENTERIC VIROME IN PROBOSCIS MONKEY | Kar Hon Ng, Tommy Tsan-Yuk Lam and Yee Ling Chong |
| 59 | Premature termination codon containing transcripts comprise a significant fraction of mRNAs | Anna Hakobyan and Maria Nikoghosyan |
| 60 | NGS-based miRNA analysis with miRCarta and miRMaster | Tobias Fehlmann, Christina Backes, Fabian Kern, Valentina Galata and Andreas Keller |
| 62 | Variant annotation pipeline for the identification of splice site SNVs | Susanne Kirchen, Dheeraj Bobbili and Patrick May |
| 64 | Integrated analysis of microRNA and mRNA expression profiles in Pediatric Multiple Sclerosis | Nicoletta Nuzziello, Arianna Consiglio, Flavio Licciulli, Marta Simone, Giorgio Grillo, Sabino Liuni, Maria Trojano and Maria Liguori |
| 66 | Analysis of differential expression of human transmembrane proteins in tumour and normal samples | Zsuzsanna Gergely and Gábor Tusnády |
| 67 | Reference genome assessment from a population scale perspective: an accurate profile of variability and noise | José Carbonell-Caballero, Alicia Amadoz, Roberto Alonso, Marta R. Hidalgo, Cankut Çubuk, David Conesa, Antonio López-Quílez and Joaquín Dopazo |
| 68 | Nanopore sequencing on low-biomass microbiota samples: cpn60 UT, full length 16S rRNA gene and whole rrn operon | Anna Cusco, Joaquim Viñes and Olga Francino |
| 69 | Identification of PAX6-dependent regulatory network during endocrine pancreatic cells and enteroendocrine cells differentiation in zebrafish | Arnaud Lavergne, Estefania Tarifeño and Bernard Peers |
| 70 | DEVELOPMENT OF A TARGETED NEXT-GENERATION SEQUENCING PANEL FOR DETECTION OF TRANSLOCATIONS, CNAs AND MUTATIONS IN MATURE B CELL NEOPLASMS: COMPARISON WITH CONVENTIONAL GENETIC TECHNIQUES | Andrea Gómez Llonín, Anna Puiggros, Benjamín Rodriguez-Santiago, Lara Nonell, Jairo Rodríguez, Heidi Mattlin, Maria Isabel Banchs, Marta Salido, Sílvia Beà, Anna Enjuanes, Mª José Larrayoz, Laura Blanco, Rosa Collado, Margarita Ortega, Esmeralda de La Banda, María Rodríguez-Rivera, Carme Melero, Xavier Calvo, Leonor Arenillas, Eva Gimeno, Blanca Sánchez, Antonio Salar, Lluís Armengol, Ana Ferrer, Lluís Colomo and Blanca Espinet |
| 71 | Combining culture-based and culture-independent strategies to understand the gut microbiomes of azo dye-reducing fecal samples | Sara Zahran, Marwa Ali-Tammam, Amal Emad Eldin, Ramy Aziz and Abdelgawad Hashem |
| 74 | Have you met my new cousins? Fast and accurate pathogen detection in environmental samples | János Juhász, Lőrinc S. Pongor, Attila Jády and Balázs Ligeti |
| 76 | Sequencing and analysis of Argania spinosa Genome | Nour El Houda Azza, Stacy Ciufo, Tatiana Tatusova, M. Gonzalo Claros, Abdelhamid El Mousadik and Hassan Ghazal |
| 78 | Linkage disequilibrium maps to guide contig ordering in genome assembly | Reuben Pengelly and Andrew Collins |
| 79 | OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes | Enrique Vidal, François Le Dily, Javier Quilez, Ralph Stadhouders, Yasmina Cuartero, Thomas Graf, Marc A Marti-Renom, Miguel Beato and Guillaume J Filion |
| 80 | Second generation molecular subgrouping of medulloblastoma: towards a working consensus of Group 3/4 subtypes | Tanvi Sharma, Edward C. Shwalbe, Daniel Williamson, Volker Hovestadt, Lukas Chavez, Marcel Kool, Paul A. Northcott, Stefan M.Pfister and Steven C.Clifford |
| 81 | Sequencing of CynD from Bacillus pumilus isolated in Peru revelated a intraspecies variable nucleotide sequences but conserved amino acid sequences. | David Pabon, Roberto Pineda, Mauro Quiñones and Santiago Justo |
| 82 | A new method to phase de novo mutations in trios | Layal Yasin, Carolin Walter, Julia Taeubner, Martin Dugas, Arndt Borkhardt and Michaela Kuhlen |
| 84 | nextPARS: Parallel probing of RNA structures in Illumina | Ester Saus, Jesse Willis, Leszek P. Pryszcz, Ahmed Hafez, Carlos Llorens, Heinz Himmelbauer and Toni Gabaldón |
| 89 | SNuPy an online platform that empowers genetic scientists to unravel disease‑causing variants from intricate genotype studies | Sebastian Ginzel, Michael Gombert, Ute Fischer, Arndt Borkhardt and Ralf Thiele |
| 90 | Pangenomics: efficient and scalable genome analysis | Sandra Smit, Siavash Sheikhizadeh Anari, Eef Jonkheer and Dick de Ridder |
| 92 | Gene prioritization, communality analysis, networking, and metabolic integrated pathway to better understand breast cancer pathogenesis (POSTER) | Andrés López-Cortés, César Paz-Y-Miño, Alejandro Cabrera-Andrade, Santiago Guerrero, Stephen J Barigye, Cristian R Munteanu, Humberto González-Díaz, Alejandro Pazos-Sierra, Yunierkis Pérez-Castillo and Eduardo Tejera |
| 93 | Pangenomic applications in plants and pathogens | Eef Jonkheer, Sandra Smit, Theo van der Lee, Siavash Sheikhizadeh Anari and Dick de Ridder |
| 94 | Identification of microRNAs as modulators of gene expression during sexual differentiation in fish under high-temperature effects. | Javier Moraleda, Julien Bobe, Francesc Piferrer and Laia Ribas |
| 95 | Length matters: Upgrading genome assemblies with Nanopore sequencing | Tyler Alioto, Fernando Cruz, Jèssica Gómez Garrido, Pere Arús and Miodrag Grbic |
| 96 | Benchmarking Project of Bisulfite Sequencing Workflows | Pavlo Lutsik, Reka Toth, Christoph Plass and Yassen Assenov |
| 97 | Scalable and Reproducible NGS Pipelines with epiCWL | Kersten Breuer, Pavlo Lutsik, Yoann Pageaud, Reka Toth, Christoph Plass and Yassen Assenov |
| 98 | A custom bioinformatics analysis pipeline for the stratification of admixed populations and prioritisation of rare single nucleotide variants | Nada Salem, Ashraf Dallol, Adel Abuzenadeh, Emmanouil Dermitzakis and Hend Nour Eldin |
| 99 | Brain gene expression response to pesticide exposure indicates effects on cognition. | Yannick Wurm, Isaabel Fletcher, Thomas Joe Colgan, Andres Arce and Richard Gill |
| 100 | Degenerative expansion of a young social chromosome supergene | Eckart Stolle, Rodrigo Pracana and Yannick Wurm |
| 102 | Whole Genome Sequencing to Track the Origin and Transmission of Tuberculosis in Low Prevalence Setting of Australia | Sanjay S. Gautam, Micheál Mac Aogáin, Louise A. Cooley, Greg Haug, Janet A. Fyfe, Maria Globan, Ronan F. O’Toole |