| Go directly to: [Friday - December 11] [Saturday - December 12] |
|
| WEDNESDAY – December 9, 2015 |
| START TIME |
END TIME |
SESSION TYPE |
| 04:00 pm |
06:00 pm |
Registration |
|
THURSDAY – December 10, 2015
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LOCATION: Ballroom |
| START TIME |
END TIME |
SESSION TYPE |
| 08:00 am |
09:00 am |
Breakfast |
| 08:00 am |
06:00 pm |
Registration |
| 09:30 am |
10:15 am |
Keynote 1
Karin Verspoor
Accelerating Biomedical Discovery through large-scale Heterogeneous Data Integration |
| 10:15 am |
10:25 am |
OP 01
Automatic mining of user reviews might reveal potentially unsafe nutritional products
Graciela Gonzalez Hernandez, Arizona State University
 Ciick here to download slides. |
| 10:25 am |
10:35 am |
OP 02
Regulatory network inference: use of whole brain- vs brain region-specific gene expression data in the mouse
Ronald Taylor, Pacific Northwest National Laboratory
Ciick here to download slides. |
| 10:35 am |
10:45 am |
OP 03
MyVariant.info: community-aggregated variant annotations as a service
Jiwen Xin, The Scripps Research Institute |
| 10:45 am |
11:05 am |
Break |
| 11:05 am |
11:15 am |
OP 04
Flowr: Robust and efficient workflows using a simple language agnostic approach
Sahil Seth, MD Anderson Cancer Center
Ciick here to download slides. |
| 11:15 am |
11:25 am |
OP 05
In-silico identification of prognostically inversely correlated miRNA - mRNA pairs in multiple cancers
Chirayu Goswami, Thomas Jefferson University |
| 11:25 am |
11:35 am |
OP 06
A framework for reproducible computational research
Apua Paquola, Salk Institute for Biological Studies |
| 11:35 am |
11:45 am |
OP 07
GraDe-SVM: Graph-Diffused Classification for the Analysis of Somatic Mutations in Cancer
Morteza Chalabi, Southern University of Denmark (SDU) |
| 11:45 am |
12:00 pm |
Technical Talk
Tom Hraha, Research Scientist, SomaLogic, Inc.
Large-Scale Longitudinal Biomarker Discovery using SOMAscan®: Diurnal Rhythms, Pregnancy and Tuberculosis Risk |
| 12:00 pm |
04:00 pm |
Ski Break |
| 04:00 pm |
04:30 pm |
Keynote 2
Carlos Oliveira
Creating molecular diagnostic tests with supervised learning using time-to-event data |
| 04:30 pm |
04:40 pm |
OP 08
High-grade serous ovarian cancer subtypes are similar across populations
Gregory Way, University of Pennsylvania |
| 04:40 pm |
04:50 pm |
OP 09
Machine learning and genomic analysis to predict drug resistance in Mycobacterium tuberculosis
Gargi Datta, University of Colorado School of Medicine, National Jewish Health |
| 04:50 pm |
05:00 pm |
OP 10
Venom Peptides as Therapeutic Agents: Can we use Phylogenetics to Inform Drug Discovery?
Joseph Romano, Columbia University
Ciick here to download slides. |
| 05:00 pm |
05:20 pm |
Break |
| 05:20 pm |
05:30 pm |
OP 11
Withdrawn |
| 05:30 pm |
05:40 pm |
OP 12
Visualizing Robustness of Complex Phenotype and Biomarker Associations
Michael Hinterberg, University of Colorado-Denver |
| 05:40 pm |
05:50 pm |
OP 13
Computational methods to analyze HNSCC samples with immune response
Ashok Sivakumar, Johns Hopkins University |
| 05:50 pm |
06:00 pm |
OP 14
Withdrawn |
| 06:30 pm |
09:30 pm |
Banquet, Thursday
December 10, 2015
Location: Il Poggio Restaurant
Snowmass Village
(Transportation provided from Viceroy Hotel Lobby beginning at 6:30 pm) |
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FRIDAY – December 11, 2015
. . . . . . . . . . . . . . . . . . . . . . . . . . .
LOCATION: Ballroom |
| START TIME |
END TIME |
SESSION TYPE |
| 08:30 am |
09:30 am |
Breakfast |
| 08:30 am |
05:30 pm |
Registration |
| 09:30 am |
10:15 am |
Keynote 3
Larry Gold
Proteomics 101 |
| 10:15 am |
10:25 am |
OP 15
REPdenovo: Inferring de novo repeat motifs from short sequence reads
Yufeng Wu, University of Connecticut
Ciick here to download slides. |
| 10:25 am |
10:35 am |
OP 16
Molecular Modeling, dynamics and Virtual Screening studies to identify potent CLDN-4 inhibitors
Jayanthi Sivaraman, VIT University |
| 10:35 am |
10:45 am |
OP 17
A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs
Soohyun Lee, Harvard Medical School
Ciick here to download slides. |
| 10:45 am |
11:05 am |
Break |
| 11:05 am |
11:15 am |
OP 18
Examination of risk factors for nontuberculous mycobacterial infections among National Jewish Health hospital patients in the United States
Ettie Lipner, University of Colorado Denver |
| 11:15 am |
11:25 am |
OP 19
Detection and interpretation of extrachromosomal microDNAs from next-generation sequencing data
Mark Maienschein-Cline, University of Illinois at Chicago |
| 11:25 am |
11:35 am |
OP 20
A genetic analysis of a complex trait in a “genetically intractable” gut microbe
Sena Bae, Duke University |
| 11:35 am |
11:45 am |
OP 21
iSeGWalker a easy handling de novo genome reconstruction dedicated to small sequence
Benjamin Saintpierre, Institut Pasteur
Ciick here to download slides. |
| 11:45 am |
04:00 pm |
-->Ski Break
-->Group Hike
(see Suzi at Registration Desk) |
| 04:00 pm |
04:30 pm |
Keynote 4
Max Alekseyev
Scaffold Assembly Based on the Analysis of Gene Orders and Genomic Repeats |
| 04:30 pm |
04:40 pm |
OP 22
Spatial modeling of drug delivery routes for treatment of disseminated ovarian cancer
Kimberly Kanigel Winner, University of Colorado
Ciick here to download slides. |
| 04:40 pm |
04:50 pm |
OP 23
Hypothesis independent test development using mass spectrometry data from patient clinical groups reveals underlying biological pathways
Krista Meyer, Biodesix, Inc |
| 04:50 pm |
05:00 pm |
OP 24
Alignment-free approach for reads classification within a single metagenomic dataset
Lusine Khachatryan, Leiden University Medical Centre
Ciick here to download slides. |
| 05:00 pm |
05:20 pm |
Break |
| 05:20 pm |
05:30 pm |
OP 25
The Virome of Red Sea Brine Pool Sediments
Sherry Aziz, American University in Cairo |
| 05:30 pm |
05:40 pm |
OP 26
Genomic Big Data: scalability challenges and solutions
Faraz Faghri, University of Illinois at Urbana-Champaign |
| 05:40 pm |
05:50 pm |
OP 27
Identification of chromatin accessibility from nucleosome occupancy and methylome sequencing
Jeong-Hyeon Choi, Georgia Regents University
Ciick here to view slides. |
| 05:50 pm |
06:00 pm |
OP 28
Charting the human genome’s regulatory landscape with transcription factor binding site predictions
Xi Chen, New York University |
| 06:00 pm |
06:30 pm |
Keynote 5
Casey S. Greene
Unsupervised discovery from large gene expression compendia with ADAGE
Ciick here to view slides. |
| 06:30 pm |
08:30 pm |
Poster Session:
- Information for presenters
- Detailed Poster Abstracts
- Brief Poster List |
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SATURDAY – December 12, 2015
. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
LOCATION: Ballroom |
| START TIME |
END TIME |
SESSION TYPE |
| 08:30 am |
09:30 am |
Breakfast |
| 08:30 am |
11:30 am |
Registration |
| 09:30 am |
10:00 am |
Keynote 6
Kirk E. Jordan
Data Centric Systems (DCS): Architecture and Solutions for High Performance Computing, Big Data and High Performance Analytics for the Life Sciences |
| 10:00 am |
10:10 am |
OP 29
Recursive Indirect Paths Modularity (RIP-M) for Detecting Uniform Community Structure in RNA-Seq Co-Expression Networks
Bahareh Rahmani, University of Tulsa
Ciick here to download slides. |
| 10:10 am |
10:20 am |
OP 30
Automatic Recovery of Toulmin Explanations from Full Text Papers
Elizabeth White, UC Denver, AMC
Ciick here to download slides. |
| 10:20 am |
10:30 am |
OP 31
Tracking Cell Cycle Progression with Single Cell Resolution during T Cell Responses
Andrey Kan, The Walter and Eliza Hall Institute
Ciick here to download slides. |
| 10:30 am |
10:50 am |
Break |
| 10:50 am |
11:00 am |
OP 32
Detection and disambiguation of geospatial locations for phylogeography
Davy Weissenbacher, Arizona State University
Ciick here to download slides. |
| 11:00 am |
11:10 am |
OP 33
Reconstructing chromosome conformation by fluorescence microscopy
Brian Ross, University of Colorado
Ciick here to download slides. |
| 11:10 am |
11:20 am |
OP 34
NGSCheckMate: Software for ensuring sample identity in next-generation sequencing studies, with or without alignmen
Soohyun Lee, Harvard Medical School |
| 11:20 am |
11:30 am |
OP 35
Modularity optimization by conformational space annealing
Jooyoung Lee, Korea Institute for Advanced Study
Ciick here to download slides. |
| 11:30 am |
12:00 pm |
Keynote 7
Lei Xie
Precision drug rescue and drug repurposing using structural systems pharmacology |
| 12:00 pm |
|
Closing |
|
| [top] |