Accepted Posters
| Poster T1 |
| Bioinformatics Visualization: A review on the novel technique used in Interactorium. |
| Arijit Nandi- Sathyabama University, Chennai, India |
| Nihal Babu (Sathyabama University, Jeppiar Nagar, Rajiv Gandhi Road, Chennai-600119, Tamil Nadu, India., Bioinformatics); Barani Kumar (Sathyabama University, Jeppiar Nagar, Rajiv Gandhi Road, Chennai-600119, Tamil Nadu., Bioinformatics); |
| Short Abstract: Here, we discuss the latest trends in visualization techniques as seen in the Interactorium, i.e. Virtual 3D cell and deviation from Java based platform. the new trends offer not only amazing graphics but also powerful prediction and analytical tools that can be visualized under real time environment, thereby increasing efficiency. |
| Long Abstract:Click Here |
|
| Poster T2 |
| BioPerl at 15 : New Features, New Directions |
| Mark Jensen- Fortinbras Research |
| Christopher Fields (U Illinois Urbana-Champaign, Institute for Genomic Biology); Jason Stajich (U California Riverside, Plant Pathology & Microbiology); |
Short Abstract: During its 15th year, the BioPerl Project, an open-source Perl toolkit for
bioinformatics, has integrated new modules and format support for handling
next-gen sequence data, including wrappers and object support for many
popular short-read tools and assemblers. Other new initiatives include user-defined run wrappers, lighter-weight subpackages, and improved
documentation policies and tools. |
| Long Abstract:Click Here |
|
| Poster T3 |
| Comparative Analysis of next-generation Sequence Alignment Algorithms |
| Gabriela Persinoti- Medical School of Ribeirão Preto/ University of São Paulo |
| Ricardo Vencio (Medical School of Ribeirão Preto/ University of São Paulo, Genetics); Nilce Martinez-Rossi (Medical School of Ribeirão Preto/ University of São Paulo, Genetics); |
| Short Abstract: The new sequencing technologies provide enormous amount of genomic data in a single experiment. To determine whether it has succeeded, the alignment of the sequenced reads to a reference genome must be performed. We analyzed next-generation sequence alignments algorithms in real data, focusing on computational resources consumption, precision and time. |
| Long Abstract:Click Here |
|
| Poster T4 |
| Visualizing biological data |
| Seán O'Donoghue- EMBL |
| No additional authors |
| Short Abstract: The methods and tools for visualizing biological data have improved considerably over the last decades, but they are still inadequate for some high-throughput datasets. For most users, a key challenge is to benefit from the deluge of data without being overwhelmed by it. This challenge is still largely unfulfilled and will require the development of truly integrated and highly useable tools. This talk will summarize the state-of-the-art in computer methods for visualizing biological data, based on a recent collection of reviews (Nature Methods, March 2010, Volume 7 No 3s ppS1-S68) and recent workshop (http://vizbi.org) focused on this topic. |
| Long Abstract:Click Here |
|
| Poster T5 |
| TL-study on long-term availability of bioinformatics web services |
| Sebastian Schultheiss- Friedrich Miescher Laboratory of the Max Planck Society |
| Marc-Christian Münch (Friedrich Miescher Laboratory of the Max Planck Society, Machine Learning in Biology); Gergana Andreeva (Friedrich Miescher Laboratory of the Max Planck Society, Machine Learning in Biology); Gunnar Rätsch (Friedrich Miescher Laboratory of the Max Planck Society, Machine Learning in Biology); |
| Short Abstract: We evaluated availability, usability and functionality of 927 web services published 2003-2009. The TL-Score reflects the presence of contact information, examples, help texts and overall usability of the service. Services with a high TL-Score are cited 2.2 times more often than low-scoring services. We provide developers with guidelines that make their service easier to use. |
| Long Abstract:Click Here |
|
Accepted Posters
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