Highlights Track
posted 05 Jul 2007
The Inferelator: learning predictive dynamic regulatory networks from heterogeneous data
Sunday, July 22 — 9:30 a.m. – 9:55 a.m.
Room: Hall C
Presented by: Richard Bonneau, New York University
What made us human?
Sunday, July 22 — 9:30 a.m. – 9:55 a.m.
Room: Hall E1
Presented by: Katherine Pollard, University of California, Davis
Redefining nodes and edges: Relating three-dimensional structures to protein networks provides evolutionary insights
Sunday, July 22 — 10:00 a.m. – 10:25 a.m.
Room: Hall C
Presented by: Philip Kim, Yale University
Expansion of protein domain repeats.
Sunday, July 22 — 10:00 a.m. – 10:25 a.m.
Room: Hall E1
Presented by: Åsa Björklund, Stockholm University
From phenome-genome networks to disease
Sunday, July 22 — 10:50 a.m. – 11:15 a.m.
Room: Hall C
Presented by: Atul Butte, Stanford University School of Medicine
Simulation – Emergent dynamics of thymocyte
Sunday, July 22 — 10:50 a.m. – 11:15 a.m.
Room: Hall E1
Presented by: Sol Efroni, NIH
Network motif identification in stochastic networks
Sunday, July 22 — 11:20 a.m. – 11:45 a.m.
Room: Hall C
Presented by: Fengzhu Sun, University of Southern California
Evolutionary origin of the peroxisome
Sunday, July 22 — 11:20 a.m. – 11:45 a.m.
Room: Hall E1
Presented by: Toni Gabaldón, Centro de Investigación Príncipe Felipe
Sense-antisense pairs: functional/evolutionary considerations
Sunday, July 22 — 11:50 a.m. – 12:15 p.m.
Room: Hall C
Presented by: Sandro de Souza, Ludwig Institute for Cancer Research
A first look at ARFome: novel dual-coding genes conserved in mammalian
Sunday, July 22 — 11:50 a.m. – 12:15 p.m.
Room: Hall E1
Presented by: Wen-Yu Chung, Pennsylvania State University
Computational Inference of Neural Information Flow Networks
Sunday, July 22 — 2:30 p.m. – 2:55 p.m.
Room: Hall C
Presented by: Alexander Hartemink, Duke University
Highlight Track: HL12
No Presentation
Sunday, July 22 — 2:30 p.m. – 2:55 p.m.
A metabolic network in the evolutionary context: Multiscale structure and modularity.
Sunday, July 22 — 3:00 p.m. – 3:25 p.m.
Room: Hall C
Presented by: Leonid Mirny, MIT
Comparative analysis of 22 coronavirus HKU1 genomes reveals a novel genotype and evidence of natural recombination in coronavirus HKU1
Sunday, July 22 — 3:00 p.m. – 3:25 p.m.
Room: Hall E1
Presented by: Yi Huang, The University of Hong Kong
Reconstructing Dynamic Regulatory Maps
Sunday, July 22 — 3:50 p.m. – 4:15 p.m.
Room: Hall C
Presented by: Jason Ernst, Carnegie Mellon University
Who lives Where – Taxonomic Assessment of Microbial Communities in the Wild
Sunday, July 22 — 3:50 p.m. – 4:15 p.m.
Room: Hall E1
Presented by: Christian von Mering, University of Zurich
A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription
Sunday, July 22 — 4:20 p.m. – 4:45 p.m.
Room: Hall C
Presented by: Israel Steinfeld, Tel Aviv University
Comparative Genomics of translation regulation in yeast
Sunday, July 22 — 4:20 p.m. – 4:45 p.m.
Room: Hall E1
Presented by: Pilpel Yitzhak, Weizmann Institute of Science
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
Sunday, July 22 — 4:50 p.m. – 5:15 p.m.
Room: Hall C
Presented by: Timothy Reddy, Boston University
Bringing automatic curation to an automatic world
Sunday, July 22 — 4:50 p.m. – 5:15 p.m.
Room: Hall E1
Presented by: Raul Rodriguez-Esteban, Columbia University
Dynomics era: How information on conformational dynamics can be used to gain a deeper understanding of biological events at the molecular level?
Sunday, July 22 — 5:20 p.m. – 5:45 p.m.
Room: Hall C
Presented by: Lee Yang, Institute of Molecular and Cellular Biosciences
The implications of alternative splicing in the ENCODE protein complement
Sunday, July 22 — 5:20 p.m. – 5:45 p.m.
Room: Hall E1
Presented by: Michael Tress, Spanish National Cancer Research Centre
Folding upon binding: why folding instability has only a small effect on binding affinity
Monday, July 23 — 9:30 a.m. – 9:55 a.m.
Room: Hall C
Presented by: Carlos Camacho, University of Pittsburgh
Computational biology of membrane proteins: From structure-based alignment to function of complex molecular machines
Monday, July 23 — 9:30 a.m. – 9:55 a.m.
Room: Hall E1
Presented by: Harel Weinstein, WEILL MEDICAL COLLEGE OF CORNELL UNIVERSITY
Domain-domain interactions are evolutionary conserved
Monday, July 23 — 10:00 a.m. – 10:25 a.m.
Room: Hall C
Presented by: Zohar Itzhaki, The Hebrew University of Jerusalem
A View from the EVEREST: Insights on Evolutionary Conserved Domains in Protein Sequences
Monday, July 23 — 10:00 a.m. – 10:25 a.m.
Room: Hall E1
Presented by: Michal Linial, The Hebrew University of Jerusalem
Local structural disorder imparts plasticity on linear motifs
Monday, July 23 — 10:50 a.m. – 11:15 a.m.
Room: Hall C
Presented by: Istvan Simon, Institute of Enzymology, BRC, Hungarian Academy of Sciences
GRID Deployment of Legacy Bioinformatics Applications with Transparent Data Access
Monday, July 23 — 10:50 a.m. – 11:15 a.m.
Room: Hall E1
Presented by: Christophe Blanchet, Univ. Lyon 1
The diversity and evolution of interface geometry
Monday, July 23 — 11:20 a.m. – 11:45 a.m.
Room: Hall C
Presented by: Wan Kyu Kim, Center for Systems and Synthetic Biology
Network robustness and modularity of protein structures in the identification of key residues for the allosteric communications
Monday, July 23 — 11:20 a.m. – 11:45 a.m.
Room: Hall E1
Presented by: Antonio del Sol, Fujirebio Inc.
Computational Design of Peptides that Target Transmembrane Helices
Monday, July 23 — 11:50 a.m. – 12:15 p.m.
Room: Hall C
Presented by: Joanna Slusky, University of Pennsylvania
Evaluation of coarse-grained models of protein dynamics using large sets of crystallographic data
Monday, July 23 — 11:50 a.m. – 12:15 p.m.
Room: Hall E1
Presented by: Dmitry Kondrashov, U of Wisconsin, Madison
The relationship among sequence diversity, coevolution, and specificity in protein interactions
Monday, July 23 — 2:30 p.m. – 2:55 p.m.
Room: Hall C
Presented by: Simon Lovell, University of Manchester
Predicting the Arabidopsis calmodulin interaction network from protein microarray data
Monday, July 23 — 2:30 p.m. – 2:55 p.m.
Room: Hall E1
Presented by: George Popescu, SIAM
The dynamic personality of proteins: Connecting internal protein dynamics and enzyme catalysis
Monday, July 23 — 3:00 p.m. – 3:25 p.m.
Room: Hall C
Presented by: Pratul Agarwal, Oak Ridge National Laboratory
Quantitative proteomic approach to study subcellular localization of membrane proteins
Monday, July 23 — 3:00 p.m. – 3:25 p.m.
Room: Hall E1
Presented by: Pawel Sadowski, Cambridge University
Gene prioritization through genomic data fusion
Monday, July 23 — 3:50 p.m. – 4:15 p.m.
Room: Hall C
Presented by: Peter Van Loo, VIB and K.U.Leuven
Large-scale mapping of human protein-protein interactions by mass spectrometry
Monday, July 23 — 3:50 p.m. – 4:15 p.m.
Room: Hall E1
Presented by: Thodoros Topaloglou, University of Toronto
From Fit to Fat and Back: Computational Discovery of Mechanisms of Insulin Resistance
Monday, July 23 — 4:20 p.m. – 4:45 p.m.
Room: Hall C
Presented by: Andre Ptitsyn, Colorado State University
Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution
Monday, July 23 — 4:20 p.m. – 4:45 p.m.
Room: Hall E1
Presented by: Soile Keränen, LBNL
Highlight Track: HL41
No Presentation
Tuesday, July 24 — 9:30 a.m. – 9:55 a.m.
Identication of Hot Spots within Druggable Binding Pockets by Computational Solvent Mapping
Tuesday, July 24 — 9:30 a.m. – 9:55 a.m.
Room: Hall E1
Presented by: Melissa Landon, Boston University
Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
Tuesday, July 24 — 10:00 a.m. – 10:25 a.m.
Room: Hall C
Presented by: John Castle, Rosetta / Merck
Function Driven Target Selection for Structural Genomics
Tuesday, July 24 — 10:00 a.m .- 10:25 a.m.
Room: Hall E1
Presented by: Iddo Friedberg, Burnham Institute for Medical Research
Bioinformatics of protein regulatory modules: predicting cyclin dependent kinase targets based on clustering of consensus motifs
Tuesday, July 24 — 10:50 a.m. – 11:15 a.m.
Room: Hall C
Presented by: Alan Moses, Wellcome Trust Sanger Institute
Using electron density in structural bioinformatics
Tuesday, July 24 — 10:50 a.m. – 11:15 a.m.
Room: Hall E1
Presented by: Roland Dunbrack, Fox Chase Cancer Center
Genome scan for cis-regulatory DNA motifs associated with social behavior in honey bees
Tuesday, July 24 — 11:20 a.m. – 11:45 a.m.
Room: Hall C
Presented by: Saurabh Sinha, University of Illinois, Urbana-Champaign
Modeling the structure of the EmrE multidrug transporter: when two x-ray structures are not enough
Tuesday, July 24 — 11:20 a.m. – 11:45 a.m.
Room: Hall E1
Presented by: Nir Ben-Tal, Tel Aviv University
Genomic Regulatory Blocks and Conservation of Synteny
Tuesday, July 24 — 11:50 a.m. – 12:15 p.m.
Room: Hall C
Presented by: Boris Lenhard, University of Bergen
Protein Structures: New Rules for Old Games
Tuesday, July 24 — 11:50 a.m. – 12:15 p.m.
Room: Hall E1
Presented by: Manfred Sippl, University of Salzburg
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
Tuesday, July 24 — 1:30 p.m. – 1:55 p.m.
Room: Hall C
Presented by: Adam Godzik, Burnham Institute for Medical Research
Evolution of alternative splicing
Tuesday, July 24 — 1:30 p.m. – 1:55 p.m.
Room: Hall E1
Presented by: Mikhail Gelfand, Institute for Information Transmission Problems, RAS
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
Tuesday, July 24 — 2:00 p.m. – 2:25 p.m.
Room: Hall C
Presented by: Steven Brenner, Berkeley
RNA structures in genomic regions of low sequence similarity between human and mouse
Tuesday, July 24 — 2:00 p.m. – 2:25 p.m.
Room: Hall E1
Presented by: Jan Gorodkin, University of Copenhagen, Faculty of Life Science
Co-evolution of transcriptional and post-translational cell-cycle regulation
Wednesday, July 25 — 9:45 a.m. – 10:10 a.m.
Room: Hall C
Presented by: Lars Jensen, European Molecular Biology Laboratory
Modeling AAA+ ring complexes from monomeric structures
Wednesday, July 25 — 9:45 a.m. – 10:10 a.m.
Room: Hall E1
Presented by: Alexander Diemand, Max-Planck Institute for Developmental Biology
Highlight Track: HL57
No Presentation
Wednesday, July 25 — 10:15 a.m. – 10:40 a.m.
RNA findings raise questions about direct optimization based predictions
Wednesday, July 25 — 10:15 a.m. – 10:40 a.m.
Room: Hall E1
Presented by: Charles (Chip) Lawrence, Brown University
An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits
Wednesday, July 25 — 11:10 a.m. – 11:35 a.m.
Room: Hall C
Presented by: Yves Lussier, The University of Chicago
Machineprose: Encoding Knowledge for Humans & Machines
Wednesday, July 25 — 11:10 a.m. – 11:35 a.m.
Room: Hall E1
Presented by: Deendayal Dinakarpandian, University of Missouri-Kansas City
Pre-steady-state decoding of the Bicoid morphogen gradient
Wednesday, July 25 — 11:40 a.m. – 12:05 p.m.
Room: Hall C
Presented by: Sven Bergmann, University of Lausanne
Improving catalytic function by ProSAR-driven enzyme evolution
Wednesday, July 25 — 11:40 a.m. – 12:05 p.m.
Room: Hall E1
Presented by: Richard Fox, Codexis
Simulating Normal and Dysregulated In Vitro Epithelial Cell Morphogenesis
Wednesday, July 25 — 12:10 p.m. – 12:35 p.m.
Room: Hall C
Presented by: C. Anthony Hunt, University of California
