Poster Session List
P01
Temporal variation in lymphocyte proteomicsPresenting Author: Carolyn Allen, Brigham Young Universitytop
P02
Incorporating prior knowledge in breast cancer subtype classifier improves performance on shifted test setsPresenting Author: Paul Anderson, California Polytechnic State Universitytop
P03
The Cultural Evolution of Vaccine Hesitancy: Modeling the Interaction between Beliefs and Vaccination BehaviorsPresenting Author: Kerri-Ann Anderson, Vanderbilt Universitytop
P04
Rigorous Benchmarking of HLA Callers for RNA Sequencing DataPresenting Author: Ram Ayyala, University of Southern California
Dottie Yu, University of Southern California, Department of Clinical Pharmacy, United Statestop
P05
Exploring hypotheses of small cell lung cancer growth mechanisms using Bayesian mutlimodel inferencePresenting Author: Samantha Beik, Vanderbilt Universitytop
P06
COPD subtypes identified from blood RNA-seq data using single sample gene network perturbationsPresenting Author: Panayiotis (Takis) Benos, University of Pittsburghtop
P08-A
A Systems Biology Approach for Identifying Escherichia coli Genes and Pathways Involved in Response to Multiple StressorsPresenting Author: Ramy Aziz, Children's Cancer Hospitaltop
P08-B
COCTAIL: The COVID-19 Clinical Trial and Intervention Literature HubPresenting Author: Ramy Aziz, Faculty of Pharmacy, Cairo Universitytop
P09
Characterizing Important Algorithmic Features of Single Cell Proteomic DataPresenting Author: Hannah Boekweg, Brigham Young UNiversitytop
P10
NetPropR: an unsupervised network propagation method Presenting Author: Samuel Boyd, University of Kansas Medical Centertop
P11
Adventures in Integrating Biobank Scale Data with Genomic, Phenotypic and Imaging Data from Other SourcesPresenting Author: Ben Busby, DNAnexustop
P12
Neoantigen immunogenicity is influenced by parent protein subcellular locationPresenting Author: Andrea Castro, University of California San Diegotop
P13
RNA-seq data science: landscape for modern RNA-seq toolsPresenting Author: Karishma Chhugani, University of Southern Californiatop
P14
DEGAS: Mapping clinical metrics to spatial transcriptomics with deep learningPresenting Author: Justin Couetil, Indiana University School of Medicinetop
P15
Research Assistant ProfessorPresenting Author: Yulin Dai, University of Texas Health Science Center at Houstontop
P16
BuDDI: Bulk Deconvolution with Domain InvariancePresenting Author: Natalie Davidson, CU Anschutztop
P17
Robust Distribution of Cancer DataPresenting Author: Corbin Day, Brigham Young Universitytop
P18
Ecology Data Browser: An Introductory Data Tool For Ecology StudentsPresenting Author: Louisa Dayton, Brigham Young Universitytop
P19
Co-expression Network and Change Point Detection Using Combined Gene Expression and miRNA Profiles to Identify Functionally Important Circulating miRNA Markers Overlap in Humans and MicePresenting Author: Lianghao Ding, University of Texas Southwestern Medical Centertop
P20
Age-dependent machine learning model improves head shape characterization and enables longitudinal evaluation of patients with craniosynostosisPresenting Author: Connor Elkhill, University of Colorado Anschutz Medical Campustop
P21
The Systems Biology Simulation Core LibraryPresenting Author: Andreas Dräger, University of Tübingentop
P22
Mapping DNA methylation trajectories in culture models of senescencePresenting Author: Jamie Endicott, Van Andel Institutetop
P23
Characterizing Regulatory Mechanisms of NPEPPS in Bladder Cancer ChemoresistancePresenting Author: Lily Elizabeth Feldman, University of Colorado Anschutz Medical Campustop
P24
A Novel Transcriptomics-based Approach to the Identification of Drug Combinations in Personalized MedicinePresenting Author: Lon Wolf Fong, University of Texas MD Anderson Cancer Centertop
P25
A workflow for variable selection in longitudinal microbiome studiesPresenting Author: Jennifer Fouquier, University of Colorado, Anschutz Medical Campustop
P26
Doctor PEPper: Hemolysis Aware Antiviral Peptide Generation with Machine LearningPresenting Author: Andrew Gao, Canyon Crest Academytop
P27
Identifying Transcriptional Patterns Specific to Down Syndrome Using Generative Neural NetworksPresenting Author: Lucas Gillenwater, University of Colorado Anschutz Medical Campustop
P28
Characterizing mRNA/Protein Relationships in CancerPresenting Author: Jose Giraldez Chavez, Brigham Young Universitytop
P29
Incorporating Metabolomic and Metagenomic Data to Improve Protein Function AnnotationsPresenting Author: Lucia Guatney, University of Coloradotop
P30
Whole genome assembly and analysis of clinical mycobacterial species using Oxford Nanopore Technologies and Illumina sequencingPresenting Author: Jo Hendrix, University of Coloradotop
P31
The systematic assessment for the completeness of metadata information accompanying omics studiesPresenting Author: Yu-Ning Huang, University of Southern Californiatop
P32
Cell-type deconvolution of sequencing-based DNA methylation data: how to leverage the power of read-level methylomes for estimating the composition of complex tissues and tumorsPresenting Author: Yunhee Jeong, DKFZ(German Cancer Research)top
P33
Visual Interactive Model Selection for Determining Predictors of Lung FunctionPresenting Author: Ying Jin, Colorado School of Public Health, CU Anschutz Medical Campustop
P35
Crossing complexity of space-filling curves reveals new principles of genome foldingPresenting Author: Nicholas Kinney, Virginia College of Osteopathic Medicinetop
P36
Predicting protein level changes from transcript level dataPresenting Author: Edward Lau, University of Colorado School of Medicinetop
P38
Alzheimer's Disease: Where Are the Remaining Disease-Altering Variants?Presenting Author: Emily Little, Brigham Young Universitytop
P39
Generalized Tensor Canonical Correlation Analysis for Network Inference Using Multi-Omics DataPresenting Author: Weixuan Liu, University of Colorado Anschutz Medical Campustop
P40
Benchmarking the performance of six variant callers on synthetic and real ctDNA datasets Presenting Author: Rugare Maruzani, University of Liverpooltop
P41
MRI Mediators: How Causal Mediation Analysis Can Explain the Relationship Between Genomic Data and Survival OutcomesPresenting Author: Emily Mastej, University of Colorado Anschutztop
P43
Using Image Recognition to Predict the Proteogenomic Status of Breast CancerPresenting Author: Bryn Mendenhall, Brigham Young Universitytop
P44
Multispecies cities in the Anthropocene: bioremediation and biomining potential of the Gowanus Canal Microbiome, an urban Superfund sitePresenting Author: Chandrima Bhattacharya, Weill Cornell Medicinetop
P45
The Ramp Atlas: Facilitating tissue-specific ramp sequence analyses across humans and SARS-CoV-2Presenting Author: Justin Miller, University of Kentucky; Brigham Young Universitytop
P46
Automated and systematic verification and validation increases quality and long-term reuse of modelsPresenting Author: Natasa Miskov-Zivanov, University of Pittsburghtop
P47
PROFILING GENE FUSIONS OF INFLAMMATORY BREAST CANCER USING A NEW BIOINFORMATIC APPROACH HIGHLIGHTS KEY DIFFERENCES BETWEEN MOLECULAR SUBTYPES Presenting Author: Carlos Morales, University of Puerto Rico Río Piedrastop
P48
Scalable estimation of microbial co-occurrence networks with Variational AutoencodersPresenting Author: James Morton, Simons Foundationtop
P49
Mitochondrial transcriptome and genetic risk for schizophreniaPresenting Author: Sreya Mukherjee, Lieber Institute for Brain Developmenttop
P50
Computational mapping of inter-brain-region gene networks dysregulated in Alzheimer's diseasePresenting Author: Manikandan Narayanan, Indian Institute of Technology (IIT) Madrastop
P51
Transferring Biological Networks by Solving Clique_based Graph AlignmentsPresenting Author: Maryam Nazarieh, Alumni of Saarland Universitytop
P52
Assessing Equivalent and Inverse Change in Genes between Diverse ExperimentsPresenting Author: Lisa Neums, University of Kansas Medical Centertop
P53
Ramp Sequences in Alzheimer's Disease and Related DementiasPresenting Author: Alyssa Nitz, Brigham Young Universitytop
P54
Comprehensive Compendium of Breast Cancer Gene-Expression DatasetsPresenting Author: Ifeanyichukwu Nwosu, Brigham Young Universitytop
P55
Improving the interpretability of random forest models of genetic association in the presence of non-additive interactionsPresenting Author: Alena Orlenko, University of Pennsylvaniatop
P56
Quantification and visualization of the tumor microenvironment heterogeneity from spatial transcriptomic experimentsPresenting Author: Oscar Ospina, Moffitt Cancer Centertop
P57
Predicting functional consequences of mutations using molecular interaction network featuresPresenting Author: Kivilcim Ozturk, University of California San Diegotop
P58
Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy responsePresenting Author: Meghana Pagadala, UCSDtop
P60
Geographical Support Vector Machines (GSVM) for the Analysis of Spatially Data Presenting Author: Shachi Patel, University of Kansas Medical Centertop
P61
Deep probabilistic generative modeling and visual evaluation of conditional single cell RNA-sequencing expression dataPresenting Author: Eric Prince, University of Colorado Anschutz Medical Campustop
P62
TidyGEO - Web-based, open-source tool for downloading, tidying, and restructuring data series from Gene Expression Omnibus (GEO)Presenting Author: Badí Israel Quinteros, Brigham Young Universitytop
P63
CREPE: A pipeline for streamlined transcription factor identification and cataloguingPresenting Author: Diego A Rosado-Tristani, University of Puerto Ricotop
P64
Understanding the Microbiome and Disease Using Vector EmbeddingsPresenting Author: Brook Santangelo, University of Colorado Anschutz Medical Campustop
P65
Adaptive evolution of conserved non-coding elements underlying the high-altitude phenotype among mammalian lineagesPresenting Author: Elysia Saputra, University of Pittsburghtop
P66
A comprehensive benchmarking of WGS-based structural variant callersPresenting Author: Varuni Sarwal, University of California Los Angelestop
P67
Multi-omics data integration of early lung adenocarcinoma reveals an association between radiomics features and immune responsePresenting Author: Maria-Fernanda Senosain, Vanderbilt Universitytop
P68
Sequential Imputation of Sparse Metabolomic DataPresenting Author: Elin Shaddox, University of Colorado Anschutz Medical Campustop
P69
Using Sub-Pattern Frequency Prunning to Find Multi-Gene Expression Patterns in Alzheimer Disease Presenting Author: Kenneth Smith, University of Missouri - St. Louistop
P70
Gender, Sex, and Sexual Orientation ProjectPresenting Author: Devorah Stucki, Brigham Young Universitytop
P71
Co-evolution based machine-learning for predicting functional interactions between human genesPresenting Author: Yuval Tabach, The Hebrew University-Hadassah Medical Schooltop
P72
Online Tools for Teaching Cancer BioinformaticsPresenting Author: Mason Taylor, Brigham Young Universitytop
P73
Best Practices for the Analysis of Whole Mitochondrial GenomesPresenting Author: Nicholas Tenney, Brigham Young Universitytop
P74
Modeling Mechanisms of Cellular Plasticity in SCLC using Boolean Gene Regulatory NetworkPresenting Author: Perry Wasdin, Vanderbilt Universitytop
P75
Morphology and gene expression profiling provide complementary information for mapping cell statePresenting Author: Gregory Way, University of Colorado Anschutztop
P76
Microbial growth dynamic estimation in metagenomic data as a tool for differentiating health-promoting bacterial strains from healthy and diseased populations.Presenting Author: Brendan Wee, Second Genome inc.top
P77
Lower sequencing coverage of germline and tumor exomes of Black patients in The Cancer Genome AtlasPresenting Author: Daniel Wickland, Mayo Clinictop
P78
ProTaxa: software to easily perform phylogenomic analyses for prokaryotic taxaPresenting Author: Joseph Wirth, Harvey Mudd Collegetop
P79
sciCAN: Single-cell chromatin accessibility and gene expression data integration via Cycle-consistent Adversarial NetworkPresenting Author: Yang Xu, The University of Tennessee, Knoxvilletop
P80
NLP Sandbox: Model-to-data ecosystem for utilizing clinical notes and benchmarking NLP toolsPresenting Author: Yao Yan, Sage Bionetworkstop
P81
Identifying Viruses from Host Genomes and Deep Learning for Prediction of Viral Integration SitesPresenting Author: Zhongming Zhao, University of Texas Health Science Center at Houstontop
P82
NF-κB signaling alterations associated with the aggressive prostate cancer subtype defined by MAP3K7 and CHD1 co-lossPresenting Author: Michael Orman, U Colorado | AMCtop
P83
Identification and evolutionary diversification of novel immunoglobulin and ion channel proteins in SARS-CoV-2 and related virusesPresenting Author: Yongjun Tan, Saint Louis Universitytop
