AGENDAS - RSG CONFERENCE & DREAM
Links within this page*: Conference Agenda | DREAM Agenda | Download Mobile App
*Proposed Programs. Agendas subject to change.
| CONFERENCE AGENDA | ||
| Go directly to: Monday, Nov 20 – Tuesday, Nov 21 (DREAM) – Download Mobile App | ||
| SUNDAY – DAY 1 – November 19, 2017 | ||
| START TIME | END TIME | SESSION TYPE |
| Registration with continental breakfast (7:30am to 9:30am) 8:00am - 5:00pm Location: MSK Lobby |
||
| 9:00 am | 9:15 am | Welcome |
| 9:15 am | 10:00 am | Keynote - Dana Pe'er A single cell lens into development and disease |
| 10:00 am | 10:15 am | Ryan Peckner Linear deconvolution unlocks next-generation mass spectrometry data to enable systems-level analysis of gene regulation by protein phosphorylation networks |
| 10:15 am | 10:30 am | Dayanne M. Castro, Nick De Veaux, Emily Miraldi and Richard Bonneau Adaptive Multiple Sparse Regression for Gene Regulatory Network Inference |
| 10:30 am | 10:45 am | Charles Blatti, Casey Hanson, Bryce Kille and Saurabh Sinha Modeling changes in transcriptomic state from a massive library of cellular signatures |
| 10:45 am | 11:15 am | Coffee Break Location: MSK Lobby & RM 105 |
| 11:15 am | 11:30 am | Yuning Zhang and Raluca Gordan Why ChIP-seq data is not the ‘absolute truth’ about where and how strongly TFs bind in vivo, and what can we do about it? |
| 11:30 am | 11:45 am | Fadia Ibrahim, Manolis Maragkakis, Panagiotis Alexiou and Zissimos Mourelatos Ribothrypsis mediates widespread, ribosome-phased, endonucleolytic decay of canonical mRNAs |
| 11:45 am | 12:30 pm | Keynote - Laxmi Parida Precision Oncology: Are we there yet? |
| 12:30 pm | 2:00 pm | Lunch Break (on-own) |
| 2:00 pm | 2:45 pm | Keynote - Debbie Marks Learning the Secrets of Sequences with Generative Models |
| 2:45 pm | 3:00 pm | Alon Diament, Anna Feldman, Elisheva Schochet, Martin Kupiec, Yoav Arava and Tamir Tuller The extent of ribosome queuing in budding yeast |
| 3:00 pm | 3:15 pm | Genevieve Stein-O'Brien, Luciane Kagohara, Sijia Li, Manjusha Thakar, Ruchira Ranaweera, Hiroyuki Ozawa, Haixia Cheng, Michael Considine, Alexander Favorov, Ludmila Danilova, Joseph Califano, Evgeny Izumchenko, Daria Gaykalova, Christine Chung and Elana Fertig Integrated time-course omics analysis distinguishes immediate therapeutic response from acquired resistance |
| 3:15 pm | 3:30 pm | Liying Chen, Gabriela Alexe, Neekesh V. Dharia, Linda Ross, Amanda Balboni Iniguez, Amy Saur Conway, Emily Jue Wang, Veronica Veschi, Norris Lam, Jun Qi, W. Clay Gustafson, Nicole Nasholm, Francisca Vazquez, Barbara A. Weir, Glenn S. Cowley, Robin M. Meyers, Aviad Tsherniak, David E. Root, James E. Bradner, Todd R. Golub, Charles W. M. Roberts, William C. Hahn, William A. Weiss, Carol J. Thiele and Kimberly Stegmaier Functional Deconvolution Strategies for the Identification of Druggable Dependencies in Pediatric Tumors |
| 3:30 pm | 4:00 pm | Coffee Break Location: MSK Lobby & RM 105 |
| 4:00 pm | 4:15 pm | Antonio Gomes, Nathan Johns, Anthony Yang, Sriram Kosuri, Christopher S. Smillie, Mark B. Smith, Eric J. Alm and Harris Wang Promiscuity in gene expression of horizontally acquired DNA |
| 4:15 pm | 4:30 pm | Francesco Asnicar, Luca Masera, Serena Manara, Nicola Segata and Enrico Blanzieri Large-scale microbial ecological interaction networks from shotgun metagenomics with the NESRA algorithm |
| 4:30 pm | 5:15 pm | Keynote - Jef Boeke Writing genomes |
| 5:30 pm | 7:00 pm | Reception with poster viewing Location: MSK Lobby & RM 105 |
| - top - | ||
| MONDAY – DAY 2 – November 20, 2017 | ||
| START TIME | END TIME | SESSION TYPE |
| Registration with continental breakfast (7:30am to 9:30am) 8:00am - 5:00pm Location: MSK Lobby |
||
| 9:00 am | 9:15 am | Special Session Welcome |
| 9:15 am | 9:30 am | Duygu Ucar The chromatin accessibility signature of human immune aging stems from CD8+ T cells |
| 9:30 am | 10:15 am | Keynote - Jedd Wolchok Immunologic Checkpoint Blockade: Exploring Combinations and Mechanisms |
| 10:15 am | 10:30 am | Bojan Losic, Amanda Craig, Sebatiao Martins-Filho, Carlos Villacorta-Martin, Swan Thung, Myron Schwartz, Gustavo Stolovitzky and Augusto Villanueva Network view of immune editing in liver cancer clonal evolution |
| 10:30 am | 10:45 am | Yuri Pritykin, Mary Philip, Edison Chiu, Varintra Krisnawan, Pete Sabo, John Stamatoyannopoulos, Philip Greenberg, Christina Leslie and Andrea Schietinger Integrative analysis of genome-wide chromatin accessibility and gene expression data to characterize T cell self-tolerance |
| 10:45 am | 11:15 am | Coffee Break Location: MSK Lobby & RM 105 |
| 11:15 am | 11:30 am | Andrew Martins, Manikandan Narayanan, Thorsten Prüstel, Bethany Fixsen, Kyemyung Park, Rachel Gottschalk, Yong Lu, Cynthia Andrews-Pfannkoch, William Lau, Katherine Wendelsdorf and John Tsang Do differences from cell to cell make a difference? Network of propagated single-cell variations tuned by macrophage environments |
| 11:30 am | 11:45 am | Joshua Pan, Robin Meyers, Brittany Michel, Nazar Mashtalir, Ann Sizemore, Jonathan Wells, Seth Cassel, Francisca Vazquez, Barbara Weir, William Hahn, Joseph Marsh, Aviad Tsherniak and Cigall Kadoch Functional analysis of mammalian protein complexes using genome-scale fitness screens |
| 11:45 am | 12:30 pm | Keynote - Nir Hacohen Explaining, predicting and generating immune responses against cancer |
| 12:30 pm | 12:45 pm | Sponsored Tech Talk: Recursion Pharmaceuticals AI and Cellular Images for Universal Drug Discovery |
| 12:45 pm | 2:00 pm | Lunch Break (on-own) |
| 2:00 pm | 2:45 pm | Keynote - Erez Leiberman-Aiden A 3D Code in the Human Genome |
| 2:45 pm | 3:00 pm | Alexander Shanku, Cindy Kalita, Anthony Findley, Heejung Shim, Francesca Luca and Roger Pique-Regi circuitSNPs: Predicting Effects Of Genetic Regulatory Variants Using Deep Neural Networks |
| 3:00 pm | 3:15 pm | Déborah Gerard, Florian Schmidt, Aurélien Ginolhac, Martine Schmitz, Rashi Halder, Peter Ebert, Marcel Schulz, Thomas Sauter and Lasse Sinkkonen Temporal epigenomic profiling identifies AHR as dynamic super-enhancer controlled regulator of mesenchymal multipotency |
| 3:15 pm | 3:30 pm | Justin Finkle, Behnam Nabet, Jonathan Licht and Neda Bagheri Pairing gene expression dynamics with in silico simulations produces novel layers of mechanistic insight into Sprouty transcription programs |
| 3:30 pm | 4:00 pm | Coffee Break Location: MSK Lobby & RM 105 |
| 4:00 pm | 4:15 pm | Daniel Kim, Viviana Risca, Arwa Kathiria, James Chappell, Zhixin Zhao, Adam Rubin, Dana Pe'Er, Howard Chang, Michael Snyder, Will Greenleaf, Paul Khavari and Anshul Kundaje Decoding regulatory sequence across skin differentiation |
| 4:15 pm | 4:30 pm | Dongwon Lee, Ashish Kapoor, Alexias Safi, Lingyun Song, Marc Halushka, Gregory Crawford and Aravinda Chakravarti Mapping human cardiac cis-regulatory elements, their functional sequence variants and their cognate transcription factors |
| 4:30 pm | 5:15 pm | Keynote - Manolis Kellis From Genetics To Therapeutics: Uncovering And Manipulating The Circuitry Of Non-coding Disease Variants |
| 5:30 pm | 7:00 pm | Reception with poster viewing Location: MSK Lobby & RM 105 |
| - top - | ||
| DREAM AGENDA - Tuesday – November 21, 2017 | ||
| START TIME | END TIME | SESSION TYPE |
| Registration with continental breakfast (7:30 to 9:30am) 8:00am - 12:00pm Location: MSK Lobby |
||
| 8:40 am | 9:00 am | DREAM 11: Welcome and Introductory Remarks - Gustavo Stolovitzky |
| 9:00 am | 9:40 am | Keynote Presentation - Henry Rodriguez Omics Convergence (Proteogenomics) in Cancer Research: Advances in Precision Medicine |
| CPTAC CHALLENGE - Paul Boutros, Chair | ||
| 9:40 am | 10:00 am | Invited Talk - David Fenyo Cancer Proteogenomics |
| 10:00 am | 10:20 am | Challenge Overview Talk: The CPTAC Challenge - Julio Saez Rodriguez The NCI-CPTAC DREAM Proteogenomics Challenge |
| 10:20 am | 10:40 am | Best Performer Talk - Xinzhou Ge The CPTAC Challenge: Imputation of Protein Abundances by Iterative Matrix Completion Algorithms with Bagging |
| 10:40 am | 11:00 am | Best Performer Talk - Hongyang Li Predicting Cell Line-Specific Protein and Phosphoprotein Abundances |
| 11:00 am | 11:30 am | Coffee Break with Posters Location: MSK Lobby & RM 105 |
| CHALLENGES UPDATE - Jim Costello, Chair | ||
| 11:30 am | 11:45 am | Challenge Update: Respiratory Viral DREAM Challenge - Solly Sieberts Respiratory Viral DREAM Challenge: Discovering dynamic molecular signatures in response to viral exposure |
| 11:45 am | 12:00 pm | Challenge Update: SMC-Het and SMC-RNA Challenges - Paul Boutros SMC-Het and SMC-RNA Challenge Update |
| 12:00 pm | 12:15 pm | Challenge Update: DREAM Workflow Execution/Multiple Myeloma - Justin Guinney Crowdsourcing a High-risk Classifier for Multiple Myeloma Patients |
| 12:15 pm | 12:45 pm | Feedback: The Good, Bad, and Ugly of DREAM Challenges - Gustavo Stolovitzky |
| 12:45 pm | 2:00 pm | Lunch with Posters Location: MSK Lobby & RM 105 |
| Digital Mammography - Gustavo Stolovitzky, Chair | ||
| 2:00 pm | 2:20 pm | Challenge Overview Talk: Digital Mammography Challenge- Thomas Schaffter The Digital Mammography DREAM Challenge: Design and Results |
| 2:20 pm | 2:40 pm | Best Performer Talk - Yaroslav Nikulin Digital Mammography DREAM Challenge: Deep Learning vs Breast Cancer |
| 2:40 pm | 3:00 pm | Best Performer Talk - Dezso Ribli Computer aided detection of cancerous lesions on mammograms with the Faster R-CNN object detection framework |
| 3:00 pm | 3:30 pm | Panel Discussion: Members of the collaborative Team |
| 3:30 pm | 4:00 pm | Coffee Break with Posters Location: MSK Lobby & RM 105 |
| 4:00 pm | 4:40 pm | Keynote Presentation - Joel Dudley Moving from Precision Medicine to Next Generation Healthcare |
| DIGITAL BIOMARKER - Larsson Omberg, Chair | ||
| 4:40 pm | 5:00 pm | Challenge Overview Talk: The need for Digital Biomarkers in Parkinson's Disease - Mark Frasier The Need for Digital Biomarkers in Parkinson's Disease |
| 5:00 pm | 5:20 pm | Challenge Overview Talk: Digital Biomarker Challenge - Solly Sieberts The Parkinson’s Disease Digital Biomarker DREAM Challenge: Understanding mobile sensor features that predict disease |
| 5:20 pm | 5:40 pm | Best Performer Talk - Yuanfang Guan Augmentation techniques for data from mobile sensors |
| 5:40 pm | 6:00 pm | Best Performer Talk - Patrick Schwab Automated Extraction of Digital Biomarkers for Parkinson's Disease using A Hierarchy of Convolutional Recurrent Attentive Neural Networks |
| 6:00 pm | 7:00 pm | DREAM Reception and Posters Location: MSK Lobby & RM 105 |
| 7:00pm | Adjourn | |
| - top - | ||
Download the RECOMB/ISCB RSG with Dream 2017 MOBILE APP!
Downloading the App is Easy!
SEARCH: The App Store or Google Play for ISCB Conferences
SCAN:.png)
To view the App on your laptop or desktop click here!
- top -
