- Program booklet now available
Keynotes were presented by:
- David Bentley (Illumina, UK)
- Appolinaire Djikeng (BecA and ILRI, Kenya)
- Vanessa Hayes (J. Craig Venter Institute, USA)
- Winston Hide (Harvard, USA)
- John Quackenbush (Harvard, USA)
A Young Researchers Forum took place:
Sat 5th March 2011
Students participating in the 2011 ISCB Africa ASBCB Conference on Bioinformatics were also welcomed to register for the Young Researchers Forum (YRF) at no extra charge. Click HERE for more information.
Preliminary Program for Main Conference CTICC
Wed 9 March 2011
08:00 Registration opens
09:00 Opening Remarks and Welcome
Welcome from ISCB president
Welcome from ASBCB president
Welcome Address: Prof Sydney Brenner
Session 1a: Genomics
Chair: Manuel Corpas
10:00 Invited speaker: David Landsman (NCBI) Feature extraction from yeast genomic data
10:30 Tea/Coffee
Session 1b: African Genomics (joint session with genetics)
Chairs: Janet Kelso and Muntaser Ibrahim
11:00 Keynote: Prof Vanessa Hayes -Mapping genomes from Southern Africa, what have we learnt?
11:45 Jeff J. Using Electronic Medical Records for Genome-wide Association Studies and Admixture Mapping to Identify SNPs Associated with ECG Traits in African Americans
12:00 Chimusa E. Genome-Wide Association Study and Scan for Epistasis of TB in the South African Colored Population
12:15 Mbah A. Predicting Genetic Susceptibility to Human Schistosomiasis
12:30 Tayo B. Fine mapping association analysis of regions on chromosomes 6 and 7 with hypertension
12:45 Lunch (13:15-13:45 CLCBio Software demo)
Session 2: Bioinformatics of human genetics (joint session)
Chairs: David Landsman and Eileen Hoal
14:00 Moore J. Tools for epistasis
14:20 Ouwe M. Envisioning the future for HIV infected individuals in Africa: setting-up of a bioinformatics resource dedicated to drug resistance problems
14:35 Keildson S. Detecting gene-gene interactions in complex diseases using lasso penalized regression
14:50 Wood L. Computational identification of synonymous SNPs in the human genome and their potential role in disease
15:05 Keynote: Prof David Bentley -Translating human genome sequencing into clinical practice
15:50 Tea/coffee
16:20 ISCB/ASBCB Society Meeting
17:20 Session ends
18:00 Opening Reception: Cocktails at President Hotel, Sea Point
Thurs 10 March 2011 (NIAID Day)
Session 3a: Host and/or pathogen systems biology
Chair: Michael Tartakovsky
09:00 Keynote: Prof John Quakenbush -Network and State Space Models: Science and Science Fiction Approaches to Cell Fate Predictions
09:50 Souiai O. Protein protein interaction prediction for inter-species systems
10:10 Fatumo S. Comparative Analysis of Apicomplexan Biochemical Pathways
10:30 Tea/Coffee
Session 3b: Database and tool development
Chair: Alex Rosenthal
11:00 Ewejobi I. Qualitative and Quantitative modelling of the glycolysis pathway in Plasmodium falciparum using Petri net theory
11:20 Hazelhurst S. KABM: A novel algorithm for clustering expressed sequence tags
11:40 Megy K. Vector Genome Annotation at VectorBase
12:00 Gajoux R. Investigating gene expression deconvolution via Nonnegative Matrix Factorization
12:20 Lunch (Poster Session I, Even numbers)
Session 4a: Molecular epidemiology and evolution
Chair: Yentram Huyen
14:00 Antunes A. Gathering Computational Genomics and Proteomics to Unravel Adaptive Evolution
14:20 Harkins G. The spread of Tomato yellow leaf curl virus from the Middle East to the world
14:40 Mntunugwa B. Investigating the Evolution of HIV-1 using the Model of Directional Selection
15:00 Wambua L. Bacterial endotoxic shock-like response during Trypanosoma congolense infection -a case of immunological mimicry?
15:20 Tea/coffee
Session 4b: Search and design of vaccines and drugs
Chair: Daniel Masiga
15:50 Travers S. A tale of two pathways: Characterising HIV resistance to treatment with CCR5 antagonists treatment
16:10 Tambunan U. Designing Cyclic Peptide Disulfide to Inhibit Interaction of Polymerase A and B1 (PAC-PB1N) in Subtype H1N1 Virus Using Molecular Docking Approach
16:30 Cloete R. In-Silico TB drug design using comparative genome analysis of DS, MDR and XDR isolates from KZN
16:50 Keynote: Dr Yentram Huyen (NIAID) -Modeling Complex Biological Systems: An Agent-Based Approach
17:40 Session ends
Fri 11 March 2011
Session 5a: Functional genomics I
Chair: Alan Christoffels
09:00 Keynote: Dr Appolinaire Djikeng -Biosciences eastern and central Africa (BecA) Hub: Genomics and metagenomics approaches for infectious diseases surveillance and pathogen discovery
09:50 Afolabi-Balogun N. Characterization of a mannose-binding Insecticidal lectin gene from Allium sativum (Garlic)
10:10 Mbah A. Developmental Expression of Genes Encoding Universal Stress Proteins in Schistosoma mansoni
10:30 Tea/Coffee
Session 5b: Functional genomics II
Chair: Ezekiel Adeyibi
11:00 Jaufeerally-Fakim Y. Features of Genomic islands from Xanthomonas species
11:20 Mazandu G. Using the underlying biological organization of the MTB functional network for protein function prediction
11:40 Phillips G. Use of High-Throughput Methods in Structural Genomics
12:00 Kwoffie S. Inferring enriched biological information from graphs composed of text-derived biomedical concepts of ontologies related to Hepatitis C Virus
12:20 Pallen. M High-throughput sequencing and clinical microbiology: progress, opportunities and challenges
12:40 Lunch and poster session II (Poster Session II, Odd numbers)
Session 6: Comparative genomics
Chair: Burkhard Rost
14:00 Obiero G. Comparative Annotation and Analysis of Protein-Coding DNA Sequences of Theileria parva Marikebuni against Theileria parva Muguga genomes
14:20 Gough J. The reference species tree of (sequenced) life
14:40 Brodzik A. A new framework for homology assessment of closely related sequences and identification of SNPs in the Bacillus anthracis genome
15:00 Invited speaker: Christine Orengo Exploiting evolution and computers to find the hidden hubs in protein networks
15:30 Tea/coffee
16:00 ISCB Outstanding Achievement Keynote Presented by: Prof Win Hide -Discovery by data integration: The collaboration meets computational biology
16:50 Session ends
17:00 Closing ceremony
Awards best poster and paper (ISCB Student Council)
Click HERE to read about Dr. Hide's Outstanding Achievement Award from ISCB.
Closing words Conference Committee
19:00 Conference Dinner: Marco’s African Place
Workshops at UWC
Monday 7 March 2011
Track 1: EBI Roadshow
- Morning: Introduction to databases at EBI (EBI)
- Afternoon: Sequence searching and alignment (EBI)
Track 2: EMBNET eBioKit
- Introduction to the eBioKit + tutorial
- Accessing Biological databases with MRS
- Introduction to EMBOSS/wEMBOSS + tutorial
Track 3: GWAS/population Genetics
Tuesday 8 March 2011
Track 1: EBI Roadshow
- Morning: Gene expression data analysis (EBI)
- Afternoon: Interactions and Pathways (EBI)
Track 2: EMBNET eBioKit
- Introduction to ENSEMBL + tutorial
- Intro to Galaxy + tutorial
Track 3: GWAS/population Genetics