ORAL PRESENTATIONS
OP-01
Adventures in Integrating Biobank Scale Data with Genomic, Phenotypic and Imaging Data from Other SourcesPresenting Author: Ben Busby, DNAnexus
OP-02
ProTaxa: software to easily perform phylogenomic analyses for prokaryotic taxaPresenting Author: Joseph Wirth, Harvey Mudd College
OP-03
Predicting functional consequences of mutations using molecular interaction network featuresPresenting Author: Kivilcim Ozturk, University of California San Diego
OP-04
Co-evolution based machine-learning for predicting functional interactions between human genesPresenting Author: Yuval Tabach, The Hebrew University-Hadassah Medical School
OP-05
Scalable estimation of microbial co-occurrence networks with Variational AutoencodersPresenting Author: James Morton, Simons Foundation
OP-06
Geographical Support Vector Machines (GSVM) for the Analysis of Spatially Data Presenting Author: Shachi Patel, University of Kansas Medical Center
OP-07
sciCAN: Single-cell chromatin accessibility and gene expression data integration via Cycle-consistent Adversarial NetworkPresenting Author: Yang Xu, The University of Tennessee, Knoxville
OP-08
TADMaster: A Comprehensive Web-based Tool for Analysis of Topologically Associated Domain Detection MethodsPresenting Author: Oluwatosin Oluwadare, University of Colorado, Colorado Springs, USA
OP-09
Error Modelled Gene Expression Analysis (EMOGEA)Presenting Author: Tobias Karakach, Tobias Karakach
OP-10
New machine learning approaches to estimate the functional consequence of mutations in diverse human populationsPresenting Author: Yuval Itan, Icahn School of Medicine at Mount Sinai
OP-11
Assessing Equivalent and Inverse Change in Genes between Diverse ExperimentsPresenting Author: Lisa Neums, University of Kansas Medical Center
OP-12
Recent Advances in Sequence Assembly Using Flow DecompositionPresenting Author: Brendan Mumey, Montana State University
OP-14
Crossing complexity of space-filling curves reveals new principles of genome foldingPresenting Author: Nicholas Kinney, Virginia College of Osteopathic Medicine
OP-15
The Cultural Evolution of Vaccine Hesitancy: Modeling the Interaction between Beliefs and Vaccination BehaviorsPresenting Author: Kerri-Ann Anderson, Vanderbilt University
OP-16
Automated and systematic verification and validation increases quality and long-term reuse of modelsPresenting Author: Natasa Miskov-Zivanov, University of Pittsburgh
OP-17
SBMLWebApp: Web-based Simulation, Steady-State Analysis, and Parameter Estimation of Systems Biology ModelsPresenting Author: Andreas Dräger, University of Tübingen
OP-18
A comprehensive benchmarking of WGS-based structural variant callersPresenting Author: Varuni Sarwal, University of California Los Angeles
OP-19
Exploring hypotheses of small cell lung cancer growth mechanisms using Bayesian mutlimodel inferencePresenting Author: Samantha Beik, Vanderbilt University
OP-20
Identifying and Classifying Goals for Scientific KnowledgePresenting Author: MAYLA BOGUSLAV, University of Colorado Anschutz Medical Campus
OP-21
The Egyptian Center for Genome and Microbiome Research: A Funded North-South Collaboration for Capacity Building and Genomics Research SustainabilityPresenting Author: Ramy Aziz, Faculty of Pharmacy, Cairo University
OP-22
The Ramp Atlas: Facilitating tissue-specific ramp sequence analyses across humans and SARS-CoV-2Presenting Author: Justin Miller, University of Kentucky; Brigham Young University
OP-23
The systematic assessment for the completeness of metadata information accompanying omics studiesPresenting Author: Yu-Ning Huang, University of Southern California
OP-24
A Tale of Two Systems: Influenza and COVID-19Presenting Author: Christian Forst, Icahn School of Medicine at Mount Sinai, New York, NY
OP-25
Genomic epidemiology of the SARS-CoV-2 Delta variant in Arizona USAPresenting Author: Matthew Scotch, Arizona State University
OP-26
Predicting protein level changes from transcript level dataPresenting Author: Edward Lau, University of Colorado School of Medicine
OP-27
Morphology and gene expression profiling provide complementary information for mapping cell statePresenting Author: Gregory Way, University of Colorado Anschutz
OP-28
Improving the interpretability of random forest models of genetic association in the presence of non-additive interactionsPresenting Author: Alena Orlenko, University of Pennsylvania
OP-29
Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy responsePresenting Author: Meghana Pagadala, UCSD
OP-30
GENOME SKIMMING BY SHOTGUN SEQUENCING TO ADDRESS LONGSTANDING QUESTIONS OF LICHEN SPECIES DIVERSITYPresenting Author: Jeffrey Clancy, Brigham Young University
OP-31
Response Signatures of SARS-CoV2 Infection Identified Using Deep Learning Approaches on Single Cell RNA-Seq DataPresenting Author: Mario Flores, University of Texas at San Antonio
OP-32
Multispecies cities in the Anthropocene: bioremediation and biomining potential of the Gowanus Canal Microbiome, an urban Superfund sitePresenting Author: Chandrima Bhattacharya, Weill Cornell Medicine
OP-33
Higher-order Markov models for metagenomic sequence classificationPresenting Author: Rajeev Azad, University of North Texas
OP-34
DEGAS: Mapping clinical metrics to spatial transcriptomics with deep learningPresenting Author: Justin Couetil, Indiana University School of Medicine
OP-35
Scientific Reproducibility and Research Automation with QIIME 2 Provenance ReplayPresenting Author: Christopher Keefe, Northern Arizona University
OP-36
Robustness and reproducibility of computational genomics toolsPresenting Author: Serghei Mangul, USC
OP-37
Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learningPresenting Author: yuzhou Chang, The Ohio State University
OP-38
Identifying Viruses from Host Genomes and Deep Learning for Prediction of Viral Integration SitesPresenting Author: Zhongming Zhao, University of Texas Health Science Center at Houston
OP-39
Quantification and visualization of the tumor microenvironment heterogeneity from spatial transcriptomic experimentsPresenting Author: Oscar Ospina, Moffitt Cancer Center