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Poster Session List


P01
Temporal variation in lymphocyte proteomics

Presenting Author: Carolyn Allen, Brigham Young University

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P02
Incorporating prior knowledge in breast cancer subtype classifier improves performance on shifted test sets

Presenting Author: Paul Anderson, California Polytechnic State University

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P03
The Cultural Evolution of Vaccine Hesitancy: Modeling the Interaction between Beliefs and Vaccination Behaviors

Presenting Author: Kerri-Ann Anderson, Vanderbilt University

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P04
Rigorous Benchmarking of HLA Callers for RNA Sequencing Data

Presenting Author: Ram Ayyala, University of Southern California
Dottie Yu, University of Southern California, Department of Clinical Pharmacy, United States

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P05
Exploring hypotheses of small cell lung cancer growth mechanisms using Bayesian mutlimodel inference

Presenting Author: Samantha Beik, Vanderbilt University

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P06
COPD subtypes identified from blood RNA-seq data using single sample gene network perturbations

Presenting Author: Panayiotis (Takis) Benos, University of Pittsburgh

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P08-A
A Systems Biology Approach for Identifying Escherichia coli Genes and Pathways Involved in Response to Multiple Stressors

Presenting Author: Ramy Aziz, Children's Cancer Hospital

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P08-B
COCTAIL: The COVID-19 Clinical Trial and Intervention Literature Hub

Presenting Author: Ramy Aziz, Faculty of Pharmacy, Cairo University

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P09
Characterizing Important Algorithmic Features of Single Cell Proteomic Data

Presenting Author: Hannah Boekweg, Brigham Young UNiversity

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P10
NetPropR: an unsupervised network propagation method

Presenting Author: Samuel Boyd, University of Kansas Medical Center

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P11
Adventures in Integrating Biobank Scale Data with Genomic, Phenotypic and Imaging Data from Other Sources

Presenting Author: Ben Busby, DNAnexus

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P12
Neoantigen immunogenicity is influenced by parent protein subcellular location

Presenting Author: Andrea Castro, University of California San Diego

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P13
RNA-seq data science: landscape for modern RNA-seq tools

Presenting Author: Karishma Chhugani, University of Southern California

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P14
DEGAS: Mapping clinical metrics to spatial transcriptomics with deep learning

Presenting Author: Justin Couetil, Indiana University School of Medicine

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P15
Research Assistant Professor

Presenting Author: Yulin Dai, University of Texas Health Science Center at Houston

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P16
BuDDI: Bulk Deconvolution with Domain Invariance

Presenting Author: Natalie Davidson, CU Anschutz

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P17
Robust Distribution of Cancer Data

Presenting Author: Corbin Day, Brigham Young University

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P18
Ecology Data Browser: An Introductory Data Tool For Ecology Students

Presenting Author: Louisa Dayton, Brigham Young University

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P19
Co-expression Network and Change Point Detection Using Combined Gene Expression and miRNA Profiles to Identify Functionally Important Circulating miRNA Markers Overlap in Humans and Mice

Presenting Author: Lianghao Ding, University of Texas Southwestern Medical Center

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P20
Age-dependent machine learning model improves head shape characterization and enables longitudinal evaluation of patients with craniosynostosis

Presenting Author: Connor Elkhill, University of Colorado Anschutz Medical Campus

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P21
The Systems Biology Simulation Core Library

Presenting Author: Andreas Dräger, University of Tübingen

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P22
Mapping DNA methylation trajectories in culture models of senescence

Presenting Author: Jamie Endicott, Van Andel Institute

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P23
Characterizing Regulatory Mechanisms of NPEPPS in Bladder Cancer Chemoresistance

Presenting Author: Lily Elizabeth Feldman, University of Colorado Anschutz Medical Campus

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P24
A Novel Transcriptomics-based Approach to the Identification of Drug Combinations in Personalized Medicine

Presenting Author: Lon Wolf Fong, University of Texas MD Anderson Cancer Center

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P25
A workflow for variable selection in longitudinal microbiome studies

Presenting Author: Jennifer Fouquier, University of Colorado, Anschutz Medical Campus

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P26
Doctor PEPper: Hemolysis Aware Antiviral Peptide Generation with Machine Learning

Presenting Author: Andrew Gao, Canyon Crest Academy

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P27
Identifying Transcriptional Patterns Specific to Down Syndrome Using Generative Neural Networks

Presenting Author: Lucas Gillenwater, University of Colorado Anschutz Medical Campus

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P28
Characterizing mRNA/Protein Relationships in Cancer

Presenting Author: Jose Giraldez Chavez, Brigham Young University

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P29
Incorporating Metabolomic and Metagenomic Data to Improve Protein Function Annotations

Presenting Author: Lucia Guatney, University of Colorado

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P30
Whole genome assembly and analysis of clinical mycobacterial species using Oxford Nanopore Technologies and Illumina sequencing

Presenting Author: Jo Hendrix, University of Colorado

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P31
The systematic assessment for the completeness of metadata information accompanying omics studies

Presenting Author: Yu-Ning Huang, University of Southern California

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P32
Cell-type deconvolution of sequencing-based DNA methylation data: how to leverage the power of read-level methylomes for estimating the composition of complex tissues and tumors

Presenting Author: Yunhee Jeong, DKFZ(German Cancer Research)

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P33
Visual Interactive Model Selection for Determining Predictors of Lung Function

Presenting Author: Ying Jin, Colorado School of Public Health, CU Anschutz Medical Campus

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P35
Crossing complexity of space-filling curves reveals new principles of genome folding

Presenting Author: Nicholas Kinney, Virginia College of Osteopathic Medicine

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P36
Predicting protein level changes from transcript level data

Presenting Author: Edward Lau, University of Colorado School of Medicine

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P38
Alzheimer's Disease: Where Are the Remaining Disease-Altering Variants?

Presenting Author: Emily Little, Brigham Young University

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P39
Generalized Tensor Canonical Correlation Analysis for Network Inference Using Multi-Omics Data

Presenting Author: Weixuan Liu, University of Colorado Anschutz Medical Campus

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P40
Benchmarking the performance of six variant callers on synthetic and real ctDNA datasets

Presenting Author: Rugare Maruzani, University of Liverpool

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P41
MRI Mediators: How Causal Mediation Analysis Can Explain the Relationship Between Genomic Data and Survival Outcomes

Presenting Author: Emily Mastej, University of Colorado Anschutz

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P43
Using Image Recognition to Predict the Proteogenomic Status of Breast Cancer

Presenting Author: Bryn Mendenhall, Brigham Young University

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P44
Multispecies cities in the Anthropocene: bioremediation and biomining potential of the Gowanus Canal Microbiome, an urban Superfund site

Presenting Author: Chandrima Bhattacharya, Weill Cornell Medicine

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P45
The Ramp Atlas: Facilitating tissue-specific ramp sequence analyses across humans and SARS-CoV-2

Presenting Author: Justin Miller, University of Kentucky; Brigham Young University

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P46
Automated and systematic verification and validation increases quality and long-term reuse of models

Presenting Author: Natasa Miskov-Zivanov, University of Pittsburgh

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P47
PROFILING GENE FUSIONS OF INFLAMMATORY BREAST CANCER USING A NEW BIOINFORMATIC APPROACH HIGHLIGHTS KEY DIFFERENCES BETWEEN MOLECULAR SUBTYPES

Presenting Author: Carlos Morales, University of Puerto Rico Río Piedras

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P48
Scalable estimation of microbial co-occurrence networks with Variational Autoencoders

Presenting Author: James Morton, Simons Foundation

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P49
Mitochondrial transcriptome and genetic risk for schizophrenia

Presenting Author: Sreya Mukherjee, Lieber Institute for Brain Development

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P50
Computational mapping of inter-brain-region gene networks dysregulated in Alzheimer's disease

Presenting Author: Manikandan Narayanan, Indian Institute of Technology (IIT) Madras

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P51
Transferring Biological Networks by Solving Clique_based Graph Alignments

Presenting Author: Maryam Nazarieh, Alumni of Saarland University

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P52
Assessing Equivalent and Inverse Change in Genes between Diverse Experiments

Presenting Author: Lisa Neums, University of Kansas Medical Center

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P53
Ramp Sequences in Alzheimer's Disease and Related Dementias

Presenting Author: Alyssa Nitz, Brigham Young University

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P54
Comprehensive Compendium of Breast Cancer Gene-Expression Datasets

Presenting Author: Ifeanyichukwu Nwosu, Brigham Young University

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P55
Improving the interpretability of random forest models of genetic association in the presence of non-additive interactions

Presenting Author: Alena Orlenko, University of Pennsylvania

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P56
Quantification and visualization of the tumor microenvironment heterogeneity from spatial transcriptomic experiments

Presenting Author: Oscar Ospina, Moffitt Cancer Center

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P57
Predicting functional consequences of mutations using molecular interaction network features

Presenting Author: Kivilcim Ozturk, University of California San Diego

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P58
Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy response

Presenting Author: Meghana Pagadala, UCSD

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P60
Geographical Support Vector Machines (GSVM) for the Analysis of Spatially Data

Presenting Author: Shachi Patel, University of Kansas Medical Center

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P61
Deep probabilistic generative modeling and visual evaluation of conditional single cell RNA-sequencing expression data

Presenting Author: Eric Prince, University of Colorado Anschutz Medical Campus

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P62
TidyGEO - Web-based, open-source tool for downloading, tidying, and restructuring data series from Gene Expression Omnibus (GEO)

Presenting Author: Badí Israel Quinteros, Brigham Young University

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P63
CREPE: A pipeline for streamlined transcription factor identification and cataloguing

Presenting Author: Diego A Rosado-Tristani, University of Puerto Rico

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P64
Understanding the Microbiome and Disease Using Vector Embeddings

Presenting Author: Brook Santangelo, University of Colorado Anschutz Medical Campus

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P65
Adaptive evolution of conserved non-coding elements underlying the high-altitude phenotype among mammalian lineages

Presenting Author: Elysia Saputra, University of Pittsburgh

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P66
A comprehensive benchmarking of WGS-based structural variant callers

Presenting Author: Varuni Sarwal, University of California Los Angeles

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P67
Multi-omics data integration of early lung adenocarcinoma reveals an association between radiomics features and immune response

Presenting Author: Maria-Fernanda Senosain, Vanderbilt University

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P68
Sequential Imputation of Sparse Metabolomic Data

Presenting Author: Elin Shaddox, University of Colorado Anschutz Medical Campus

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P69
Using Sub-Pattern Frequency Prunning to Find Multi-Gene Expression Patterns in Alzheimer Disease

Presenting Author: Kenneth Smith, University of Missouri - St. Louis

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P70
Gender, Sex, and Sexual Orientation Project

Presenting Author: Devorah Stucki, Brigham Young University

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P71
Co-evolution based machine-learning for predicting functional interactions between human genes

Presenting Author: Yuval Tabach, The Hebrew University-Hadassah Medical School

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P72
Online Tools for Teaching Cancer Bioinformatics

Presenting Author: Mason Taylor, Brigham Young University

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P73
Best Practices for the Analysis of Whole Mitochondrial Genomes

Presenting Author: Nicholas Tenney, Brigham Young University

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P74
Modeling Mechanisms of Cellular Plasticity in SCLC using Boolean Gene Regulatory Network

Presenting Author: Perry Wasdin, Vanderbilt University

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P75
Morphology and gene expression profiling provide complementary information for mapping cell state

Presenting Author: Gregory Way, University of Colorado Anschutz

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P76
Microbial growth dynamic estimation in metagenomic data as a tool for differentiating health-promoting bacterial strains from healthy and diseased populations.

Presenting Author: Brendan Wee, Second Genome inc.

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P77
Lower sequencing coverage of germline and tumor exomes of Black patients in The Cancer Genome Atlas

Presenting Author: Daniel Wickland, Mayo Clinic

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P78
ProTaxa: software to easily perform phylogenomic analyses for prokaryotic taxa

Presenting Author: Joseph Wirth, Harvey Mudd College

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P79
sciCAN: Single-cell chromatin accessibility and gene expression data integration via Cycle-consistent Adversarial Network

Presenting Author: Yang Xu, The University of Tennessee, Knoxville

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P80
NLP Sandbox: Model-to-data ecosystem for utilizing clinical notes and benchmarking NLP tools

Presenting Author: Yao Yan, Sage Bionetworks

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P81
Identifying Viruses from Host Genomes and Deep Learning for Prediction of Viral Integration Sites

Presenting Author: Zhongming Zhao, University of Texas Health Science Center at Houston

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P82
NF-κB signaling alterations associated with the aggressive prostate cancer subtype defined by MAP3K7 and CHD1 co-loss

Presenting Author: Michael Orman, U Colorado | AMC

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P83
Identification and evolutionary diversification of novel immunoglobulin and ion channel proteins in SARS-CoV-2 and related viruses

Presenting Author: Yongjun Tan, Saint Louis University

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