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Schedule at a Glance

Program schedule tentative and subject to change. Programming time is Taipei Standard Time

If you are experiencing formatting issues with this schedule you can also view it on github here

Click here to watch asmbPLS: Adaptive Sparse Multi-block Partial Least Square for Survival Prediction using Muti-Omics Data by Runzhi Zhang

at National Cheng Kung University, Tainan, Taiwan
Day 1  Monday, December 12, 2022  [day2] [day3]
9:30 – 17:00 Registration Desk Open
9:45 – 10:00 Opening Ceremony
10:00 – 11:00 Keynote: Martin Steinegger
Mega-scale protein structure prediction and search
Day 1, Morning Session
Keynote intro & session chair TBA
11:00 – 11:30 How to optimally sample a sequence for rapid analysis
Martin Frith, Jim Shaw and John Spouge
11:30 – 12:00 SlowMoMan: A web app for discovery of important features along user-drawn trajectories in 2D embeddings
Kiran Deol, Griffin Weber and Yun William Yu
12:00 – 13:30 Lunch off-site
(locals can help international participants find food in small groups)
13:30 – 14:30 Keynote: Naomichi Matsumoto
Technological advances in NGS and bioinformatics for the analysis of human genetic diseases
Day 1, Afternoon Session
Keynote intro & session chair: Paul Horton
14:30 – 15:00 HIGHLIGHT: Clinical and therapeutic application of adenosine to inosine RNA editing in glioma
Sean Chun-Chang Chen and Sheng-Hau Lin
15:00 – 15:30 ☕  Coffee Break  ☕
15:30 – 17:30 Poster Session
Day 2  Monday, December 13, 2022  [day1] [day3]
09:00 – 10:00 Keynote: Pao-Yang Chen
Epigenome Bioinformatics in Plants
10:00 – 10:20 Inference of single-cell network using mutual information for scRNA-seq data analysis
Lan-Yun Chang, Ting-Yi Hao, Wei-Jie Wang and Chun-Yu Lin
10:20 – 10:40 Extracting T cell receptor reads from RNA-Seq data for studying non-recombined sequences in T cell lymphoma cell lines
Chen-Yan Hung, Cheng-Han Lin and Tsunglin Liu
10:40 – 11:00 An immune-suppressing protein in human endogenous retroviruses
Huan Zhang, Shengliang Ni and Martin Frith
11:00 – 11:20 Anomalous Relative Frequency of Trimeric Tandem Repeats in Animal Genomes
Chotinan Nitikitpaiboon and Martin Frith
11:20 – 11:40 Incorporating tissue-specific gene expression data to improve chemical-disease inference
Shan-Shan Wang, Chia-Chi Wang, Chien-Lun Wang and Chun-Wei Tung
11:40 – 12:00 Advanced unsupervised feature extraction finds novel application and software tool to select more reasonable differentially methylated cytosines
Y-H. Taguchi and Turki Turki
12:00 – 13:00 Lunch on-site
(lunch boxes provided)
13:00 – 13:20 A putative scenario of how de novo protein-coding genes originate in the Saccharomyces cerevisiae lineage
Tetsushi Yada and Takeaki Taniguch
13:20 – 13:40 PSM-SMOTE: Propensity Score Matching and Synthetic Minority Oversampling for handling unbalanced microbiome data
Taesung Park and Jeongsup Moon
13:40 – 14:00 DNA-protein quasi-mapping for rapid differential gene expression analysis in non-model organisms
Kyle Santiago and Anish Man Singh Shrestha
14:00 – 14:20 Representation of Neuron Activity and Examination of Cell Detection in Calcium Imaging Data by Max-Min Intensity Images
Yu-Wei Tsay, Chia-Ying Wu, Wei-Hsin Chen, Chien-Chang Chen and Arthur Chun-Chieh Shih
14:20 – 14:40 NuKit: A Deep Learning Platform for Fast Nucleus Segmentation of Histopathological Images
Ching-Nung Lin, Christine H Chung and Aik Choon Tan
14:40 – 15:00 Highly-accurate prediction of colorectal cancer through low abundance uncultivated genomes recovered using metagenomic co-assembly and binning approach
Po-Ting Lin and Yu-Wei Wu
15:00 – 15:30 ☕  Coffee Break  ☕
15:30 – 17:30 Excursion to Chimei Museum
18:00 – 20:00 Conference Banquet
Day 3  Monday, December 14, 2022  [day1] [day2]
09:00 – 10:00 Keynote: Zhiping Weng
Annotating human and mouse candidate cis-regulatory elements in the ENCODE project
Day 3, Morning Session
Keynote intro & session chair Pao-Yang Chen
10:00 – 10:40 Encode Tutorial
Henry Pratt
10:40 – 11:00 A comparative analysis of ENCODE and Cistrome in the context of TF binding signal
Stefano Perna, Pietro Pinoli, Stefano Ceri and Limsoon Wong
11:00 – 11:20 MethylSeqLogo: DNA methylation smart sequence logos
Fei-Man Hsu and Paul Horton
11:20 – 11:40 Predicting splicing patterns from the transcription factor binding sites in the promoter with deep learning
Tzu-Chieh Lin, Cheng-Hung Tsai, Cheng-Kai Shiau, Jia-Hsin Huang and Huai-Kuang Tsai
11:40 – 13:00 Lunch off-site
(locals can help international participants find food in small groups)
13:00 – 15:00 Special Sesssion Invited Talks
Michiaki Hamada,
Yoshinori Fukasawa,
Wei-Cheng Lo,
Wataru Iwasaki
15:00 – 15:30 ☕  Coffee Break  ☕
Day 3, Afternoon Session
Session chair Wesson Wu
15:30 – 15:50 ThermalProGAN: a sequence-based thermally stable protein generator trained using un-paired data
Hui-Ling Huang, Chong-Heng Weng, Torbjörn E. M. Nordling and Yi-Fan Liou
15:50 – 16:10 Evaluating network-based missing protein prediction using p-values, Bayes Factors, and probabilities
Wilson Wen Bin Goh, Kong Weijia and Limsoon Wong
16:10 – 16:30 A Deconvolution Approach to Unveiling the Immune Microenvironment of Complex Tissues and Tumors in Transcriptomics
Shu-Hwa Chen, Bo-Yi Yu, Wen-Yu Kuo, Ya-Bo Lin, Sheng-Yao Sue, I-Hsuan Lu, Chung-Yen Lin and Wei-Hsuan Chuang
16:30 – 16:50 Effective modeling of the chromatin structure by coarse-grained methods
Irina Tuszynska, Paweł Bednarz and Bartek Wilczynski
16:50 – 17:05 Awards & Closing Remarks

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