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NGS 2018 | April 9 – 11, 2018 | Barcelona, Spain | Posters

POSTERS



Submission # Title Author(s)
1 Anti-inflammatory, immune-modulatory and antioxidant effects of date fruit (Phoenix dactylifera) extract in rats treated with AlCl3 Fawzia Alshubaily and Nadia Osman
2 Diagnosis of Glioma Tumors Using Circulating Cell-Free DNA Vikrant Palande, Dorith Raviv-Shay and Milana Frenkel-Morgenstern
3 Functional and Structutural analysis of the impact of the SNPs in Human Gene SCN8A, In Silion Approach Nosaiba Elkheir M. Ali, Elaf Ibrahim Osman, Rayan S Ali, Sahar E. E. Mohamed, Fedaa Fathalrahman M, Amin M. Ahmed, Sara Shamat, Sanad Abdalbage Mohammed Abdalsadeg Mohammed, Ashraf Osman Ibrahim and Mohamed A. I. Alfaki
4 Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis Sufang Wang, Hui Yang, Chen Zhang, Nu Zhang and Michael Gribskov
5 Computational Analysis of Functional Coding/Noncoding Single Nucleotide Polymorphisms (SNPs/Indels) in Human NEUROG1 gene Shimaa Mahalah, Zhoor Hamid, Samah Ibrahim and Shazalia Babiker
6 A comprehensive analysis of small non-coding RNAs in T-cell prolymphocytic leukemia samples Leticia G Leon, Fabiënne van Opstal, Steven C. Koetzier, Joyce Schilperoord-Vermeulen, Anton W. Langerak and Stefan J. Erkeland
7 Pilot microbiome profiling of a pharmaceutical factory reveals influence of workers, water, and soil Amal Hamdy, Moamen El-Massry, Mona Kashef, Magdy Amin and Ramy Aziz
8 Using MinION to assist de novo assembly of the Streptococcus agalactiae genome Tamara Hernández-Beeftink, Hector Rodríguez-Pérez, Ana Díaz-De-Usera, Rafaela González-Montelongo, José M Lorenzo-Salazar, Fabián Lorenzo-Díaz and Carlos Flores
11 Whole genome sequence of Methicillin-resistant Staphylococcus aureus strain SO-1977 isolated from Sudan Sofia Ali
13 Efficient population-scale variant analysis and prioritization with VAPr Adam Mark, Amanda Birmingham, Carlo Mazzafe, Guorong Xu and Kathleen Fisch
16 Detection of signatures of translation and ribonucleoprotein particles in evolutionary conserved regions of long non-coding RNAs. Jorge Ruiz-Orera and M. Mar Albà
18 Sequencing and annotation of resurrection plant H. rhodopensis cp and mt genomes. Zdravka Ivanova, Elena Apostolova, Gergana Zahmanova, Evelina Daskalova, Galina Yahubyan, Ivan Minkov and Vesselin Baev
19 Clustering sRNA-seq data for plant miRNAs de novo annotation. George Minkov, Valentina Toneva, Ivan Minkov and Vesselin Baev
22 Assessing the genomic diversity and selection footprints on dromedary camels using full genome sequencing and genotyping-by-sequence approaches Hussain Bahbahani, Hassan Musa, Eltahir Shuiep, Faisal Al Mathen and Olivier Hanotte
23 A Novel Association between Lysyl Oxidase (LOX) Gene Polymorphisms and Intracranial Aneurysm in the Korean population Bong Jun Kim, Young Mi Kim, Jin Pyeong Jeon and Jae Jun Lee
24 Using RNA-seq and Ribo-seq to understand de novo gene origination in yeast William Blevins, Xavier Messaguer, Jorge Ruiz-Orera, José Luis Villanueva-Cañas, Bernat Blasco-Moreno, Laura Aviñó-Esteban, Guillem Lopez-Grado Salinas, Lorena Espinar, Juana Díez, Lucas Carey and M. Mar Albà
25 Inference of genomic spatial organization from single WGBS samples Emanuele Raineri, Francois Serra, Renee Beekman, Roser Vilarrasa-Blasi, Iñaki Martin-Subero, Marc Marti-Renom, Ivo Gut and Simon Heath
26 Somatic Variant Calling Benchmarking Milan Domazet, Sanja Mijalkovic and Aleksandar Makragic
27 High-throughput characterization of RNA function at single site resolution from mutational interference mapping experiments (MIME) Maureen Smith, Redmond Smyth, Roland Marquet and Max von Kleist
28 Improving target sequence information via de novo assembly of RNA-Seq data from closely related species Julia Söllner, Germán Leparc, Matthias Zwick, Kay Nieselt and Eric Simon
29 Identification of a single nucleotide insertion associated with antibiotic resistance in Burkholderia pseudomallei Véronique Sarilar, Charles Chapus, Marine Schnetterle, Olivier Gorgé, Aïda Boughammoura, Fabienne Neulat-Ripoll, Fabrice Biot and Thomas Poyot
30 Comparison of orthology determination algorithms for RNA-seq phylogenetics Madison H Hansen and Ward C Wheeler
31 Efficient large-scale whole genome alignment computation based on the SuperGenome André Hennig and Kay Nieselt
32 A workflow for accurate neoantigen discovery using NGS data Ognjen Milicevic, Vladimir Kovacevic, Ana Mijalkovic Lazic, Nikola Skundric, Nevena Ilic Raicevic, Milica Kojicic and Jack Digiovanna
33 Next-Generation Sequencing and Network Analysis of Mycobacterium tuberculosis Sridhar Hariharaputran
34 Rabix Suite: open-source development project for creating and running computational workflows in Common Workflow Language Bogdan Gavrilovic
35 Capturing changes in transcription factor activity with ATAC-Seq Ignacio Tripodi, Mary Ann Allen and Robin Dowell
37 Homologous recombination deficiency detection in breast cancer using whole exome sequencing TCGA data Marko Petkovic, Aleksandra Stevovic, Gavrilo Andric and Stefan Stojanovic
39 Identifying genomic regions susceptible to systematic sequencing error to improve variant detection Timothy Freeman, Dennis Wang and Jason Harris
41 Simultaneous detection and accurate quantification of coding and non-coding RNAs using a single sequencing reaction Vincent Boivin, Gabrielle Deschamps-Francoeur, Sherif Abou Elela and Michelle Scott
43 Phylogeny-guided genome assembly method for short nucleotide reads from deep sequencing of mixed microbial samples Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan and Tommy Tsan-Yuk Lam
46 Mining of RNA-seq libraries to compute cellular metabolic state Marcelo Rivas-Astroza and Raúl Conejeros
47 Identification of micropeptides by characteristic splicing patterns in RNA-seq data Alexey Mironov, Olga Kalinina, Rory Johnson and Dmitri Pervouchine
50 Identification of epigenomic features linked to 3D interactions using snapshots of chromatin social networks Kat Cheung, Vera Pancaldi, Inmaculada Hernandez-Lopez, Laura Castro, Alfonso Valencia, Manolis Papamichos-Chronakis, Lisa Prendergast and Daniel Rico
51 FASH16S - Fast automated shell based running pipeline for 16S rRNA amplicon NGS data Balamuralikrishna Jayaprakash, Jussi Paananen, Tarja Pitkänen, Pirkka V. Kirjavainen and Martin Täubel
54 Genomic locus-locus interaction networks to identify non-coding pathogenic mutations in immune disorders Maninder Heer, Sophie Hambleton and Daniel Rico
57 METAGENOMIC STUDY OF ENTERIC VIROME IN PROBOSCIS MONKEY Kar Hon Ng, Tommy Tsan-Yuk Lam and Yee Ling Chong
59 Premature termination codon containing transcripts comprise a significant fraction of mRNAs Anna Hakobyan and Maria Nikoghosyan
60 NGS-based miRNA analysis with miRCarta and miRMaster Tobias Fehlmann, Christina Backes, Fabian Kern, Valentina Galata and Andreas Keller
62 Variant annotation pipeline for the identification of splice site SNVs Susanne Kirchen, Dheeraj Bobbili and Patrick May
64 Integrated analysis of microRNA and mRNA expression profiles in Pediatric Multiple Sclerosis Nicoletta Nuzziello, Arianna Consiglio, Flavio Licciulli, Marta Simone, Giorgio Grillo, Sabino Liuni, Maria Trojano and Maria Liguori
66 Analysis of differential expression of human transmembrane proteins in tumour and normal samples Zsuzsanna Gergely and Gábor Tusnády
67 Reference genome assessment from a population scale perspective: an accurate profile of variability and noise José Carbonell-Caballero, Alicia Amadoz, Roberto Alonso, Marta R. Hidalgo, Cankut Çubuk, David Conesa, Antonio López-Quílez and Joaquín Dopazo
68 Nanopore sequencing on low-biomass microbiota samples: cpn60 UT, full length 16S rRNA gene and whole rrn operon Anna Cusco, Joaquim Viñes and Olga Francino
69 Identification of PAX6-dependent regulatory network during endocrine pancreatic cells and enteroendocrine cells differentiation in zebrafish Arnaud Lavergne, Estefania Tarifeño and Bernard Peers
70 DEVELOPMENT OF A TARGETED NEXT-GENERATION SEQUENCING PANEL FOR DETECTION OF TRANSLOCATIONS, CNAs AND MUTATIONS IN MATURE B CELL NEOPLASMS: COMPARISON WITH CONVENTIONAL GENETIC TECHNIQUES Andrea Gómez Llonín, Anna Puiggros, Benjamín Rodriguez-Santiago, Lara Nonell, Jairo Rodríguez, Heidi Mattlin, Maria Isabel Banchs, Marta Salido, Sílvia Beà, Anna Enjuanes, Mª José Larrayoz, Laura Blanco, Rosa Collado, Margarita Ortega, Esmeralda de La Banda, María Rodríguez-Rivera, Carme Melero, Xavier Calvo, Leonor Arenillas, Eva Gimeno, Blanca Sánchez, Antonio Salar, Lluís Armengol, Ana Ferrer, Lluís Colomo and Blanca Espinet
71 Combining culture-based and culture-independent strategies to understand the gut microbiomes of azo dye-reducing fecal samples Sara Zahran, Marwa Ali-Tammam, Amal Emad Eldin, Ramy Aziz and Abdelgawad Hashem
74 Have you met my new cousins? Fast and accurate pathogen detection in environmental samples János Juhász, Lőrinc S. Pongor, Attila Jády and Balázs Ligeti
76 Sequencing and analysis of Argania spinosa Genome Nour El Houda Azza, Stacy Ciufo, Tatiana Tatusova, M. Gonzalo Claros, Abdelhamid El Mousadik and Hassan Ghazal
78 Linkage disequilibrium maps to guide contig ordering in genome assembly Reuben Pengelly and Andrew Collins
79 OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes Enrique Vidal, François Le Dily, Javier Quilez, Ralph Stadhouders, Yasmina Cuartero, Thomas Graf, Marc A Marti-Renom, Miguel Beato and Guillaume J Filion
80 Second generation molecular subgrouping of medulloblastoma: towards a working consensus of Group 3/4 subtypes Tanvi Sharma, Edward C. Shwalbe, Daniel Williamson, Volker Hovestadt, Lukas Chavez, Marcel Kool, Paul A. Northcott, Stefan M.Pfister and Steven C.Clifford
81 Sequencing of CynD from Bacillus pumilus isolated in Peru revelated a intraspecies variable nucleotide sequences but conserved amino acid sequences. David Pabon, Roberto Pineda, Mauro Quiñones and Santiago Justo
82 A new method to phase de novo mutations in trios Layal Yasin, Carolin Walter, Julia Taeubner, Martin Dugas, Arndt Borkhardt and Michaela Kuhlen
84 nextPARS: Parallel probing of RNA structures in Illumina Ester Saus, Jesse Willis, Leszek P. Pryszcz, Ahmed Hafez, Carlos Llorens, Heinz Himmelbauer and Toni Gabaldón
89 SNuPy an online platform that empowers genetic scientists to unravel disease‑causing variants from intricate genotype studies Sebastian Ginzel, Michael Gombert, Ute Fischer, Arndt Borkhardt and Ralf Thiele
90 Pangenomics: efficient and scalable genome analysis Sandra Smit, Siavash Sheikhizadeh Anari, Eef Jonkheer and Dick de Ridder
92 Gene prioritization, communality analysis, networking, and metabolic integrated pathway to better understand breast cancer pathogenesis (POSTER) Andrés López-Cortés, César Paz-Y-Miño, Alejandro Cabrera-Andrade, Santiago Guerrero, Stephen J Barigye, Cristian R Munteanu, Humberto González-Díaz, Alejandro Pazos-Sierra, Yunierkis Pérez-Castillo and Eduardo Tejera
93 Pangenomic applications in plants and pathogens Eef Jonkheer, Sandra Smit, Theo van der Lee, Siavash Sheikhizadeh Anari and Dick de Ridder
94 Identification of microRNAs as modulators of gene expression during sexual differentiation in fish under high-temperature effects. Javier Moraleda, Julien Bobe, Francesc Piferrer and Laia Ribas
95 Length matters: Upgrading genome assemblies with Nanopore sequencing Tyler Alioto, Fernando Cruz, Jèssica Gómez Garrido, Pere Arús and Miodrag Grbic
96 Benchmarking Project of Bisulfite Sequencing Workflows Pavlo Lutsik, Reka Toth, Christoph Plass and Yassen Assenov
97 Scalable and Reproducible NGS Pipelines with epiCWL Kersten Breuer, Pavlo Lutsik, Yoann Pageaud, Reka Toth, Christoph Plass and Yassen Assenov
98 A custom bioinformatics analysis pipeline for the stratification of admixed populations and prioritisation of rare single nucleotide variants Nada Salem, Ashraf Dallol, Adel Abuzenadeh, Emmanouil Dermitzakis and Hend Nour Eldin
99 Brain gene expression response to pesticide exposure indicates effects on cognition. Yannick Wurm, Isaabel Fletcher, Thomas Joe Colgan, Andres Arce and Richard Gill
100 Degenerative expansion of a young social chromosome supergene Eckart Stolle, Rodrigo Pracana and Yannick Wurm
102 Whole Genome Sequencing to Track the Origin and Transmission of Tuberculosis in Low Prevalence Setting of Australia Sanjay S. Gautam, Micheál Mac Aogáin, Louise A. Cooley, Greg Haug, Janet A. Fyfe, Maria Globan, Ronan F. O’Toole

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