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Updated Feb. 02, 2011
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Updated Feb. 02, 2011
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Please, find the Exhibitor Sign-up Form HERE.
The Organizing Committee invites you to showcase your tools, products and services to the ISCB Africa ASBCB 2011 delegates. Conference attendance is anticipated to exceed 150 delegates from academic institutions throughout Africa and around the world. In addition, this conference overlaps by one day and will include a shared session with the Joint International Conference of the African and Southern African Societies of Human Genetics, thus providing exhibitors the added opportunity to target an additional audience of up to 250 participants on the first day.
inqaba biotec/CLC - http://www.inqababiotec.co.za
EMBnet - http://www.embnet.org/
CPGR - http://www.cpgr.org.za/
CHPC - http://www.chpc.ac.za/
FASEB - http://www.faseb.org/
ISCB - http://www.iscb.org
ASBCB - http://www.asbcb.org
Package includes:
* Please note that exhibit booth staff are not registered to attend scientific sessions or evening activities. In order for exhibit booth staff to participate in these conference activities they must register as a conference attendee.
General Guidelines:
Please find the Exhibitor Sign-up Form HERE.
We look foward to your participation!
The Young Researchers Forum (YRF) is an exclusive day in which students from several parts of Africa will be granted the opportunity to share and corroborate their work with fellow students/peers in Africa. The YRF day will be held on Saturday the 5th March 2011 in conjunction with two International Conferences, i.e. ISCB Africa ASBCB Conference on Bioinformatics and the Joint International Conference of the African & Southern African Societies of Human Genetics. See: http://www.humangenetics2011.org/young.htm for details.
The YRF day will be comprised of a full day of activities for students in the fields of human genetics and bioinformatics from all over Africa, with a programme that includes both plenary speakers and student presentations. The forum will seek to encourage socializing and networking among students on the continent. As African scientists, we recognize the important role that capacity development plays in our country and continent, and this forum is aimed to serve as a platform through which we can encourage support and introduce mentors to students who are pursuing this field of study.
We would like to encourage sponsorship of this non-profit scientific event, and emphasize that this is the first of its kind for both bioinformatics and human genetics in South Africa. This event serves an especially important role in developing and forming the young scientific careers of graduate and post-graduate students in these fields. In line with the themes of the two international conferences that follow, we also encourage South African science/biotech-related industries and role-players to participate in this event as far as possible.
For more info, contact This email address is being protected from spambots. You need JavaScript enabled to view it.
Registration Options:
On this page:
--> Institutions registering 10 paid participants together earn one additional student registration for free.
--> Individuals also registering for the Human Genetics Conference are entitled to a 10% discount off registration fees to both the ISCB Africa ASBCB and the Human Genetics conferences.
--> Registration fee for students on travel fellowships will be covered by the fellowship (registration required - use faxable pdf registration form and follow instructions for indicating 0 registration fee due).
--> If you are not yet a member or ISCB (international participants) or ASBCB (African participants), you must first enroll for membership with the respective Society to earn the members-only conference registration discounts (or you can sign up for membership when using the faxable PDF registration form)
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EARLY REGISTRATION PRICES THROUGH 25th JANUARY 2011
Please note: All registration fees will be charged in South African Rand (R) currency, except online credit card payments, which will be charged in US Dollars (USD). A $10 processing fee will be added for online credit card payments to cover the costs of bank transfer fees to move the funds to South Africa.
AFRICAN
ATTENDEES |
NON-AFRICAN ATTENDEES
|
|||
ASBCB Member | Non-Member | ISCB Member | Non-Member of ISCB | |
n/a | R 3,500 (or 525 USD) |
Industry
|
R 3,690 (or 555 USD) |
R 4,400 (or 660 USD) |
R 2,150 (or 325 USD) |
R 2,800 (or 420 USD) |
Academic/Government
|
R 2,950 (or 444 USD) |
R 3,800 (or 570 USD) |
R 1,500 (or 225 USD) |
R 1,900 (or 285 USD) |
Student / Postdoc *
|
R 2,200 (or 333 USD) |
R 3,000 (or 450 USD) |
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LATE REGISTRATION PRICES AFTER 25th JANUARY 2011
Please note: The USD rates shown below are subject to change due to exchange rate fluctuations. A firm USD rate will be set no later than 25th January 2011.
AFRICAN
ATTENDEES |
NON-AFRICAN ATTENDEES
|
|||
ASBCB Member | Non-Member | ISCB Member | Non-Member of ISCB | |
n/a | R 4,375 (or 660 USD) |
Industry
|
R 4,610 (or 700 USD) |
R 5,500 (or 830 USD) |
R 2,688 (or 405 USD) |
R 3,500 (or 525 USD) |
Academic/Government
|
R 3,688 (or 555 USD) |
R 4,750 (or 715 USD) |
R 2,125 (or 320 USD) |
R 2,500 (or 375 USD) |
Student / Postdoc *
|
R 2,875 (or 430 USD) |
R 3,750 (or 565 USD) |
* An Advisor letter for Postdocs and Student ID for Students will be required upon check-in at the conference venue to verify eligibility for these registration categories.
Registration fees includes attendance at all scientific sessions from 9-11 march, the conference program booklet, as well as teas/coffees and lunches. Fees do not include accommodation, travel, or local transportation.
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WORKSHOPS - MONDAY 7th & TUESDAY 8th MARCH
Workshops will be held at the University of the Western Cape in Belville, South Africa (see www.uwc.ac.za/.) Some worskhops are 1/2 day, with the EMBNet and Population genetics workshops being 2 full days each. Registration does not allow for making 1/2 day selections if choosing one of the 2 day options.
Workshop Fees are ZAR 160 per day (the full-day fee applies even if registering only one 1/2 day workshop on any day, so all workshop participants are encouraged to participate in two 1/2 day workshops on the same date if not attending one of the 2-day options).
Workshop Title |
Date |
No. days |
1AM - Introduction to databases at EBI |
Mon 7th March AM |
½ day |
1PM - Sequence searching and alignment |
Mon 7th March PM |
½ day |
2AM - Gene expression data analysis |
Tues 8th March AM |
½ day |
2PM - Interactions and Pathways |
Tues 8th March PM |
½ day |
3EMB - EMBNet eBioKit 1: eBioKit; Biological databases; EMBOSS/wEMBOSS; ENSEMBL; Galaxy |
Mon 7th & Tues 8th March |
2 days |
4POP - Population genetics |
Mon 7th & Tues 8th |
2 days |
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YOUNG RESEARCHERS FORUM - SATURDAY, 5th MARCH
For Students and Postdocs only, a Young Researchers Forum is provided at no additional fee. Participants must register at www.humangenetics2011.org/young.htm
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* Confirmed speakers are Winston Hide (Harvard, USA), Appolinaire Djikeng (Biosciences central and eastern Africa (BecA) and International Livestock Research Institute (ILRI), Kenya), Vanessa Hayes (J. Craig Venter Institute, USA), and David Bentley (illumina, UK)
Dr. Winston Hide of the Harvard School of Public Health was presented with the ISCB Award for Outstanding Achievement, and, as part of this award, delivered the ISCB Keynote lecture at the ISCB Africa ASBCB 2011 conference in Cape Town, South Africa.
A unique award from the International Society for Computational Biology, the ISCB Award for Outstanding Achievement was presented as a means of recognizing Dr. Hide’s significant achievements in an underdeveloped region of the world. The award was proposed by ISCB President Burkhard Rost, and the Society’s highest-ranking leaders - the member-elected Officers of ISCB that serve on the Executive Committee - unanimously approved.
The motivation behind this first ever ISCB Award for Outstanding Achievement at the meeting in Cape Town was driven by Dr. Hide’s profound impact on bioinformatics in Africa. As founder of the South African National Bioinformatics Institute (SANBI) at the University of Western Cape in 1996, and Director for many of the years that followed, he was able to establish the first PhD program in Bioinformatics on the African continent. This accomplishment earned him a great deal of respect among the members of the ISCB Board of Directors, and in 2001 he was nominated and elected to serve as an ISCB Director. Upon joining the Board he also accepted the invitation to chair the ISCB Education Committee, a core committee dedicated to advancing the mission of ISCB. Dr. Hide filled both of those important positions until the expiration of his term in 2005.
As other African countries followed suit in establishing advanced degrees in bioinformatics, Dr. Hide then founded the African Society of Bioinformatics and Computational Biology (ASBCB) in order to bring the bioinformatics communities throughout Africa together as a cohesive and collaborative region. The ASBCB was accepted into the ISCB Affiliated Regional Groups program, and remains an active and important affiliate of ISCB.
Other significant accomplishments of Dr. Hide’s time in South Africa were also considered in choosing him as the recipient of this unique award: Particularly, he founded the Medical Research Council Unit for Bioinformatics Capacity Development, and established the WHO regional Training Center for bioinformatics in Africa. These were both seen as essential contributions to the lasting development of bioinformatics within the African region.
ISCB congratulates Dr. Winston Hide on being selected for this award. His impact on bioinformatics in Africa is unparalleled, and we hope it serves to inspire many others.
Students participating in the 2011 ISCB Africa ASBCB Conference on Bioinformatics were also welcomed to register for the Young Researchers Forum (YRF) at no extra charge. Click HERE for more information.
Wed 9 March 2011
08:00 Registration opens
09:00 Opening Remarks and Welcome
Welcome from ISCB president
Welcome from ASBCB president
Welcome Address: Prof Sydney Brenner
Session 1a: Genomics
Chair: Manuel Corpas
10:00 Invited speaker: David Landsman (NCBI) Feature extraction from yeast genomic data
10:30 Tea/Coffee
Session 1b: African Genomics (joint session with genetics)
Chairs: Janet Kelso and Muntaser Ibrahim
11:00 Keynote: Prof Vanessa Hayes -Mapping genomes from Southern Africa, what have we learnt?
11:45 Jeff J. Using Electronic Medical Records for Genome-wide Association Studies and Admixture Mapping to Identify SNPs Associated with ECG Traits in African Americans
12:00 Chimusa E. Genome-Wide Association Study and Scan for Epistasis of TB in the South African Colored Population
12:15 Mbah A. Predicting Genetic Susceptibility to Human Schistosomiasis
12:30 Tayo B. Fine mapping association analysis of regions on chromosomes 6 and 7 with hypertension
12:45 Lunch (13:15-13:45 CLCBio Software demo)
Session 2: Bioinformatics of human genetics (joint session)
Chairs: David Landsman and Eileen Hoal
14:00 Moore J. Tools for epistasis
14:20 Ouwe M. Envisioning the future for HIV infected individuals in Africa: setting-up of a bioinformatics resource dedicated to drug resistance problems
14:35 Keildson S. Detecting gene-gene interactions in complex diseases using lasso penalized regression
14:50 Wood L. Computational identification of synonymous SNPs in the human genome and their potential role in disease
15:05 Keynote: Prof David Bentley -Translating human genome sequencing into clinical practice
15:50 Tea/coffee
16:20 ISCB/ASBCB Society Meeting
17:20 Session ends
18:00 Opening Reception: Cocktails at President Hotel, Sea Point
Thurs 10 March 2011 (NIAID Day)
Session 3a: Host and/or pathogen systems biology
Chair: Michael Tartakovsky
09:00 Keynote: Prof John Quakenbush -Network and State Space Models: Science and Science Fiction Approaches to Cell Fate Predictions
09:50 Souiai O. Protein protein interaction prediction for inter-species systems
10:10 Fatumo S. Comparative Analysis of Apicomplexan Biochemical Pathways
10:30 Tea/Coffee
Session 3b: Database and tool development
Chair: Alex Rosenthal
11:00 Ewejobi I. Qualitative and Quantitative modelling of the glycolysis pathway in Plasmodium falciparum using Petri net theory
11:20 Hazelhurst S. KABM: A novel algorithm for clustering expressed sequence tags
11:40 Megy K. Vector Genome Annotation at VectorBase
12:00 Gajoux R. Investigating gene expression deconvolution via Nonnegative Matrix Factorization
12:20 Lunch (Poster Session I, Even numbers)
Session 4a: Molecular epidemiology and evolution
Chair: Yentram Huyen
14:00 Antunes A. Gathering Computational Genomics and Proteomics to Unravel Adaptive Evolution
14:20 Harkins G. The spread of Tomato yellow leaf curl virus from the Middle East to the world
14:40 Mntunugwa B. Investigating the Evolution of HIV-1 using the Model of Directional Selection
15:00 Wambua L. Bacterial endotoxic shock-like response during Trypanosoma congolense infection -a case of immunological mimicry?
15:20 Tea/coffee
Session 4b: Search and design of vaccines and drugs
Chair: Daniel Masiga
15:50 Travers S. A tale of two pathways: Characterising HIV resistance to treatment with CCR5 antagonists treatment
16:10 Tambunan U. Designing Cyclic Peptide Disulfide to Inhibit Interaction of Polymerase A and B1 (PAC-PB1N) in Subtype H1N1 Virus Using Molecular Docking Approach
16:30 Cloete R. In-Silico TB drug design using comparative genome analysis of DS, MDR and XDR isolates from KZN
16:50 Keynote: Dr Yentram Huyen (NIAID) -Modeling Complex Biological Systems: An Agent-Based Approach
17:40 Session ends
Fri 11 March 2011
Session 5a: Functional genomics I
Chair: Alan Christoffels
09:00 Keynote: Dr Appolinaire Djikeng -Biosciences eastern and central Africa (BecA) Hub: Genomics and metagenomics approaches for infectious diseases surveillance and pathogen discovery
09:50 Afolabi-Balogun N. Characterization of a mannose-binding Insecticidal lectin gene from Allium sativum (Garlic)
10:10 Mbah A. Developmental Expression of Genes Encoding Universal Stress Proteins in Schistosoma mansoni
10:30 Tea/Coffee
Session 5b: Functional genomics II
Chair: Ezekiel Adeyibi
11:00 Jaufeerally-Fakim Y. Features of Genomic islands from Xanthomonas species
11:20 Mazandu G. Using the underlying biological organization of the MTB functional network for protein function prediction
11:40 Phillips G. Use of High-Throughput Methods in Structural Genomics
12:00 Kwoffie S. Inferring enriched biological information from graphs composed of text-derived biomedical concepts of ontologies related to Hepatitis C Virus
12:20 Pallen. M High-throughput sequencing and clinical microbiology: progress, opportunities and challenges
12:40 Lunch and poster session II (Poster Session II, Odd numbers)
Session 6: Comparative genomics
Chair: Burkhard Rost
14:00 Obiero G. Comparative Annotation and Analysis of Protein-Coding DNA Sequences of Theileria parva Marikebuni against Theileria parva Muguga genomes
14:20 Gough J. The reference species tree of (sequenced) life
14:40 Brodzik A. A new framework for homology assessment of closely related sequences and identification of SNPs in the Bacillus anthracis genome
15:00 Invited speaker: Christine Orengo Exploiting evolution and computers to find the hidden hubs in protein networks
15:30 Tea/coffee
16:00 ISCB Outstanding Achievement Keynote Presented by: Prof Win Hide -Discovery by data integration: The collaboration meets computational biology
16:50 Session ends
17:00 Closing ceremony
Awards best poster and paper (ISCB Student Council)
Click HERE to read about Dr. Hide's Outstanding Achievement Award from ISCB.
Closing words Conference Committee
19:00 Conference Dinner: Marco’s African Place
Workshops at UWC
Monday 7 March 2011
Track 1: EBI Roadshow
Track 2: EMBNET eBioKit
Track 3: GWAS/population Genetics
Tuesday 8 March 2011
Track 1: EBI Roadshow
Track 2: EMBNET eBioKit
Track 3: GWAS/population Genetics
Where will the 2011 ISCB Africa ASBCB meeting be held?
Cape Town, South Africa, at the Cape Town International Convention Center
The address is: Convention Square, 1 Lower Long Street, Cape Town, 8001 South Africa. Directions and maps can be found HERE.
What hotel accommodation options are there?
See the Travel Information page HERE for hotel and all other travel information.
Who is organizing this meeting?
This meeting constitutes the second joint meeting of the International Society for Computational Biology (ISCB) and the African Society of Bioinformatics and Computational Biology (ASBCB). The Medical Research Council of South Africa (MRC) has been hired as the local professional conference organizer to implement all logistics and handle the financial management of the conference.
What is the purpose of this meeting?
ISCB Africa ASBCB Conference on Bioinformatics provides a forum for the sharing of research efforts and results, encourages discussion among attendees, and fosters an environment to create new collaborations in this interdisciplinary field. Scientists whose research focuses on all areas in Bioinformatics are invited to participate. The meeting also facilitates links between young and emerging scientists from Africa and their colleagues from the international community whose research may be highly relevant to their work.
How long is the meeting?
The meeting consists of a 3-day conference preceeded by 2 workshop days offered as an added option to African students. Workshops are presented by highly accomplished researchers. The meeting includes keynote talks given by invited speakers from Africa and around the world.
ISCB Members enjoy discounts on conference registration (up to $150), journal subscriptions, book (25% off), and job center postings (free).
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