Leading Professional Society for Computational Biology and Bioinformatics
Connecting, Training, Empowering, Worldwide

UPCOMING DEADLINES & NOTICES

  • Last day for presenting and poster authors to complete registration *no extensions*
    GLBIO 2024
    April 22, 2024
  • Late poster submissions open (posters only)
    ISMB 2024
    April 22, 2024
  • Talks and posters submissions deadline
    ECCB 2024
    April 23, 2024
  • Registration deadline for organisers and speakers
    ECCB 2024
    April 30, 2024
  • Last day to upload ANY/ALL files to the virtual Platform
    GLBIO 2024
    May 06, 2024
  • Acceptance notification for talks and posters
    ECCB 2024
    May 08, 2024
  • Tech track proposal deadline (closes earlier if capacity is reached)
    ISMB 2024
    May 10, 2024
  • Early bird registration opens
    APBJC 2024
    May 10, 2024
  • Talk and/or poster acceptance notifications
    ISMB 2024
    May 13, 2024
  • Conference fellowship invitations sent for early abstract accepted talks and posters
    ISMB 2024
    May 13, 2024
  • (Conditional) Acceptance notification for proceedings
    ECCB 2024
    May 15, 2024
  • Registration deadline for talk presenting authors
    ECCB 2024
    May 15, 2024
  • CAMDA extended abstracts deadline
    ISMB 2024
    May 20, 2024
  • Late poster submissions deadline
    ISMB 2024
    May 20, 2024
  • Conference fellowship application deadline
    ISMB 2024
    May 20, 2024
  • Revised paper deadline
    ECCB 2024
    May 25, 2024
  • Tech track acceptance notification
    ISMB 2024
    May 31, 2024
  • Last day for discounted student hotel booking
    ISMB 2024
    May 27, 2024
  • Late poster acceptance notifications
    ISMB 2024
    May 28, 2024
  • CAMDA acceptance notification
    ISMB 2024
    May 30, 2024
  • Complete workshop/tutorial programme with speakers and schedule online
    ECCB 2024
    May 30, 2024
  • Conference fellowship acceptance notification
    ISMB 2024
    May 31, 2024
  • Tech track presentation schedule posted
    ISMB 2024
    May 31, 2024
  • Final acceptance notification for proceedings
    ECCB 2024
    May 31, 2024

Upcoming Conferences

A Global Community

  • ISCB Student Council

    dedicated to facilitating development for students and young researchers

  • Affiliated Groups

    The ISCB Affiliates program is designed to forge links between ISCB and regional non-profit membership groups, centers, institutes and networks that involve researchers from various institutions and/or organizations within a defined geographic region involved in the advancement of bioinformatics. Such groups have regular meetings either in person or online, and an organizing body in the form of a board of directors or steering committee. If you are interested in affiliating your regional membership group, center, institute or network with ISCB, please review these guidelines (.pdf) and send your exploratory questions to Diane E. Kovats, ISCB Chief Executive Officer (This email address is being protected from spambots. You need JavaScript enabled to view it.).  For information about the Affilliates Committee click here.

  • Communities of Special Interest

    Topically-focused collaborative communities

  • ISCB Member Directory

    Connect with ISCB worldwide

  • Green ISCB

    Environmental Sustainability Effort

  • Equity, Diversity, and Inclusion

    ISCB is committed to creating a safe, inclusive, and equal environment for everyone

Professional Development, Training, and Education

ISCBintel and Achievements

TALK ABSTRACTS



Temporarily archived.


- top -

POSTER PRESENTATION SCHEDULE



Odd numbered posters will be presented on Tuesday, May 21 from 12:00 PM-1:30 PM in Varsity II & III
Even numbered posters will be presented on Wednesday, May 22
from 12:00 PM-1:30 PM in Varsity II & III

Posters can be put up any time after 8:30 on the day they are to be presented and will be taken down at the end of each day.

# Title Author(s)
1 MRI Image Synthesis for the Diagnosis of Parkinson's Disease using Deep Learning Neeyanth Kopparapu
2 ADAR-mediated RNA editing and neuropsychiatric disorders Noel-Marie Plonski, Caroline Nitirahardjo, Ain Shajihan and Helen Piontkivska
3 Role of ADAR-mediated RNA editing in molecular evolution of arboviruses Heather Milliken Mercer, Noel-Marie Plonski and Helen Piontkivska
4 Amylotrophic lateral sclerosis-like Motor Impairment in Prion Diseases Eden Teferedegn, Cemal Un and Dawit Tesfaye
5 Structural Insight on Bio-remediation of Emerging Pollutants: A Modelling-Based structure-function Study Pravindra Kumar
6 Conformer and pharmacophore based identification of peptidomimetic inhibitors of chikungunya protease. Shailly Tomar
7 Genome-Scale Multilabel Prediction for Tissue-specific Annotation of Long Non-coding RNAs Aljohara Almulhim, Swapna Vidhur Daulatabad, Vachik S. Dave, Felipe Wendt Porto, Mohammad Hasan and Sarath Chandra Janga
8 A method for detecting and correcting under-clustered gene families Akshay Yadav, David Fernández-Baca and Steven Cannon
9 Characterization of clonal evolution in microsatellite unstable metastatic cancers through multi-regional tumor sequencing Russell Bonneville, Lianbo Yu, Julie Reeser, Thuy Dao, Michele Wing, Hui-Zi Chen, Melanie Krook, Jharna Miya, Eric Samorodnitsky, Amy Smith, Nicholas Nowacki and Sameek Roychowdhury
10 Modulation of the Human Gut Microbiome by Curcumin Vraj Patel and Michael Burns
11 An Improved Species-level Taxonomic Classification Method for Marker Gene Sequences Xiang Gao, Huaiying Lin, Kashi Revanna and Qunfeng Dong
12 Analysis of popular computational codon usage models and their association with ribosome footprinting-implied translationally slow sequence positions Gabriel Wright, Anabel Rodriguez, Jun Li, Patricia Clark, Tijana Milenković and Scott Emrich
13 MitoMut: an efficient approach to detecting mitochondrial DNA deletions from paired-end next-generation sequencing data C. Shane Elder and Catherine Welsh
14 Fama: a computational tool for comparative analysis of shotgun metagenomic data Alexey Kazakov and Pavel Novichkov
15 Assessing applicability of web-based algorithms for next generation sequencing coupled high-throughput biomolecule screening research Momoko Tajiri
16 Constructing a mitochondrial sequence profiling tool (mitoKmer) for identification of eukaryotic species in shotgun metagenomic samples. Mark Mammel, Padmini Ramachandran, Monica Pava-Ripoll, Andrea Ottesen, Susan Leonard and Jayanthi Gangiredla
17 Functional prediction of hypothetical proteins in shrimp white spot syndrome virus Padmanabhan Mahadevan and Paige Harris
18 Khalique Newaz, Gabriel Wright, Jacob Piland, Jun Li, Patricia Clark, Scott Emrich, and Tijana Milenkovic Network analysis of synonymous codon usage
19 Operons as a Tractable Model for Evolutionary Complexity Huy Nguyen and Iddo Friedberg
20 Quantitative Phenotype Portal for Animal Model Selection Matthew Hoffman, Jennifer R. Smith, Shur-Jen Wang, Stan Laulederkind, Monika Tutaj, Marek Tutaj, G. Thomas Hayman, Jyothi Thota, Elizabeth Bolton, Jeffrey L. de Pons, Harika Nalabolu, Melinda Dwinell and Mary Shimoyama
21 Epitomy – A comprehensive database and transcriptomics browser for exploring human and mouse epitranscriptomes across cell types Patrick Stevens, Sasank Vemuri, Huzaifa Hassan and Sarath Janga
22 The genetic architecture of expression and splicing in African ancestry populations Ryan Schubert, Paul Okoro, Amy Luke, Lara Dugas and Heather Wheeler
23 Identification of Gram-Positive Bacteria Commonly Found in Dietary Supplements Using a Novel kmer Database Jayanthi Gangiredla, Mark Mammel, Tammy Barnaba and Carmen Tartera
24 Zero-Inflated Random Forests for Single Cell RNA-Seq Modeling Daniel Conn, Kirby Johnson, Emery Bresnick and Sunduz Keles
25 Identify transgenic alleles and locations in plants using a Nanopore sequencing technology Chi Zhang
26 Research Autopsy Demonstrates Branching Evolution of Resistance Mechanisms in Metastatic Gastrointestinal Stromal Tumor Anoosha Paruchuri, Hui-Zi Chen, Russell Bonneville, Julie Reeser, Michele Wing, Melanie Krook, Eric Samorodnitsky, Jharna Miya, Thuy Dao, Amy Smith, Aharon Freud, Patricia Allenby and Sameek Roychowdhury
27 Pathway-Regularized Matrix Factorization Aaron Baker and Anthony Gitter
28 Bioinformatics Analysis of Metabolomics Data Unveiled Critical Metabolomics Signature in Breast Cancer Fadhl Alakwaa and Lana Garmire
29 Transcriptional biomarkers of survival in osteosarcoma correlate to distinct DNA methylation networks. Lauren Mills, Logan Spector, Subree Subramanian and Jaime Modiano
30 CIRCULAR PEARSON CORRELATION USING COSINE SERIES EXPANSION Shih-Gu Huang, Andrey Gritsenko, Martin Lindquist and Moo Chung
31 Regulatory network-based comparative analysis of single-cell RNA-seq datasets Viswesh Periyasamy, Katherine Mueller, Divya Sinha, Sunnie Grace McCalla, Benjamin Steyer, Pawan Shahi, Rasa Valiauga, Kimberly Edwards, Cole Bacig, Stephanie Steltzer, Sandhya Srinivasan, Amr Abdeen, Evan Cory, Alireza Fotuhi Siahpirani, Bikash Pattnaik, Krishanu Saha, David Gamm and Sushmita Roy
32 Integrative Analysis for Leveraging Islet Chromatin Accessibility of Founder Diversity Outbred (DO) Mice To Interpret Diabetic GWAS SNPs Chenyang Dong, Mark Keller, Shane Simonett, Gary Churchill, Alan Attie and Sunduz Keles
33 Comparative Analysis of Alternative Splicing Profiles In T-Helper Cell Subsets Deepak Kumar Lakshmipathi, Mir Quoseena, Benjamin Ulrich, Mark Kaplan and Sarath Janga
34 Identification of informative features in computational prediction of high-resolution Hi-C interaction matrices Shilu Zhang, Deborah Chasman, Sara Knaack and Sushmita Roy
35 Direct RNA-sequencing of human cell lines for transcriptome-wide mapping and annotation of 3’ tails at single molecule resolution Quoseena Mir, Aniruddhan Govindaraman, Mansi Srivastava, Raja Shekar Varma Kadamuri, Rajneesh Srivastava and Sarath Janga
36 Multi-cancer Data-driven Prediction of Synthetic Lethality and Response to Cancer Treatment Shaoli Das, Xiang Deng, Kristin Valdez, Kevin Camphausen and Uma Shankavaram
37 MINDFUL: A ​M​ethod to ​I​dentify ​N​ovel and ​D​iverse Signals with ​F​ast, U​nsupervised L​earning Mallika Parulekar and Leelavati Narlikar
38 A Reward System Polygenic Risk Score for Predicting Obesity and Substance Use Disorders Kristen Stevens, Daniel Marks, Joyanna Hansen and Shannon McWeeney
39 Signatures and predictions of specialized metabolism genes in Solanum lycopersicum Bethany Moore, Peipei Wang, Pengxiang Fan, Bryan Leong, Craig Schenck, Aaron Lee, Robert Last, Cornelius Barry, Shin-Han Shiu and Yann-Ru Lou
40 The effect of the choice of network inference method on the structure and function of the resulting gene co-expression network Qi Li, Katrina Button-Simons, Michael Ferdig and Tijana Milenković
41 A cell adhesion gene interaction network characterizes lupus patients in glomerular RNAseq Felix Eichinger, Narayanan B. Perumal, Rajasree Menon, Edgar Otto, Matthias Kretzler and Celine C. Berthier
42 Imputing the Expression of Unmeasured Genes In Transcriptomes Across Studies, Platforms, and Technologies

Jake Canfield

43 Co-expression network analysis of RNA-Seq data reveals highly correlated genes responsible for host-pathogen interactions Surabhi Naik
44 Classifying T cell activity with convolutional neural networks Zijie Wang, Alex J Walsh, Melissa C Skala and Anthony Gitter
45 IDENTIFYING BIOMARKERS IN IDIOPATHIC PULMONARY FIBROSIS Sadik Kaur
46 IDENTIFYING BIOMARKERS IN SJOGREN’S SYNDROME Sadik Khuder, Nezam Altorok and Oluwatobi Lasisi
47 Identification of Vaccine Efficacy Associated Microbial Features using Compositional Analysis of Gut Microbiomes Hayden Brochu, Elise Smith, Fang Yang, Michelle Carlson, Lynn Law, Scott Hansen, Louis Picker, Michael Gale Jr. and Xinxia Peng
48 Inferring Complex Phylogenetic Networks More Efficiently and Accurately Cora Allen-Coleman and Cécile Ané
49 Generation and Analysis of a Schizophrenia Proteomic Signature Using GLSig James Reigle, Guillaume Labilloy, Robert McCullomsmith, Jaroslaw Meller and Adam Funk
50 Kaleidoscope: A New Bioinformatics Pipeline Application for in Silico Hypothesis Testing of Gene Expression Changes in Severe Mental Illness Khaled Alganem, Scott Miruzzi, Jarek Meller and Robert McCullumsmith
51 MicroRNA- lncRNA target analysis on the multiple sclerosis susceptible genotype and co-expression lncRNA networks constructing. Samira Rahimi Rad and Shima Rahimirad
52 A combination of DNA sequence and epigenetic modifications accurately predicts genome-wide Aryl Hydrocarbon Receptor binding sites Wenjie Qi and Sudin Bhattacharya
53 Evolution of nucleotide composition of the Mid-Range Inhomogeneous(MRI) sequences in the human genome Rajan Paudel and Alexei Fedorov
54 Inter-Assembly Remapping Pipeline for Transposable Elements Ethan Holleman, Jasen Jackson, Henry Wittich, Zain Anwar and Howard Laten
55 FM-HighLD: A method for Single and Multi-Trait Fine-Mapping for Variants in High LD with Integrated Functional Annotation Rene Welch and Sunduz Keles
56 Identification of Intrinsically Disordered Proteins in Adenoviruses Rachel Cacace and Padmanabhan Mahadevan
57 Evolution of Genomic Domain Content in Metazoa Yuting Xiao, Maureen Stolzer and Dannie Durand
58 Inferring competing endogenous RNA (ceRNA) interactions in cancer Ziynet Nesibe Kesimoglu and Serdar Bozdag
59 Optimizing Gene Predictors in Diverse Population Jennifer Takamura, Elyse Geoffroy and Heather Wheeler
60 A mechanistic modeling approach for interpreting transcriptome dynamics during the immune response in the model plant Arabidopsis Xiaotong Liu, Chad Myers and Fumiaki Katagiri
61 OntoMate: a text-mining tool aiding curation at the Rat Genome Database Jyothi Thota, Marek Tutaj, Jeff de Pons, Jennifer R. Smith, Shur-Jen Wang, Monika Tutaj, Elizabeth Bolton, Matthew Hoffman, Stan Laulederkind, G. Thomas Hayman and Mary Shimoyama
62 SwiftOrtho: a Fast, Memory-Efficient, Multiple Genome Orthology Classifier Xiao Hu and Iddo Friedberg
63 Learning Drug Function from Chemical Structure Jesse Meyer, Shengchao Liu, Ian Miller, Anthony Gitter and Joshua Coon
64 Expansion of the Rat Genome Database Pathway Ontology (PW) – mapping Reactome terms to PW as synonyms and new terms G. Thomas Hayman, Jennifer R. Smith, Monika Tutaj, Lucy Lu Wang, John H. Gennari and Mary Shimoyama
65 CAZyme Gene Cluster (CGCs) predictions in bacteria reveal physically linked carbohydrate utilization genes that use different transporter systems across bacterial phyla Catherine Ausland and Yanbin Yin
66 InterViewer, a Cytoscape-based viewer for displaying interactions between selected sets of proteins Marek Tutaj, Jyothi Thota, Jeff de Pons, Jennifer R. Smith, Stan Laulederkind, G. Thomas Hayman, Victoria Petri, Shur-Jen Wang and Mary Shimoyama
67 Orphan Genes Shared by Pathogenic Genomes Are More Associated with Bacterial Pathogenicity Yanbin Yin and Sarah Entwistle
68 Identifying self-renewing subpopulation of human Leukemia stem cells using single-cell RNA-seq analysis Yoonkyu Lee, Klara Noble-Orcutt, Chad Myers and Zohar Sachs
69 Identifying Temporal High Throughput Gene Expression Data Sets for Comparative Transcriptome Analysis Shawn Oliai and Guenter Tusch
70 Long Intergenic Non-coding RNA Profiles of Pheochromocytoma and Paraganglioma: A Novel Prognostic Biomarker Suman Ghosal, Shaoli Das, Ying Pang, Melissa Gonzales, Thanh-Truc Huynh, David Taieb, Joakim Crona, Uma Shankavaram and Karel Pacak
71 Evolution of Recombination: RecBCD and AddAB in bacteria Deepti Gurung and Robert Blumenthal
72 Genome Scale Metabolic Network Reconstruction of Thermotoga sp. Strain RQ7. Jyotshana Gautam, Ashok Maharjan and Zhaohui Xu
73 Antibiotic resistance prediction models for Gram-negative pathogens from whole genome sequencing data Pj Van Camp, David Haslam and Alexey Porollo
74 DoubletDecon: A Computational Approach for the Removal of Single-Cell RNA-Seq Doublets Erica DePasquale, Daniel Schnell, Pieter-Jan Van Camp, H. Leighton Grimes and Nathan Salomonis
75 Characterizing RV144 vaccine priming in HIV breakthrough infections through machine learning applications Thembi Mdluli, Dominic Paquin-Proulx, Bonnie Slike, Gina Donofrio, Sandhia Vasan, Rob O’connell, Supachai Rerks-Ngarm, Margaret Ackerman, Robert Gramzinski, Jerome Kim, Nelson L. Michael, Merlin L. Robb, Michael Eller, Shelly Krebs and Morgane Rolland
76 Functional analysis of oral biofilm during periodontitis progression using microbial metatranscriptome approach Melline Noronha, Renato Casarin, Thiago Rangel, Mabelle Monteiro and Marcio Casati
77 Modeling degrees of genetic redundancy among duplicate genes with machine learning Siobhan Cusack, Fanrui Meng, Peipei Wang, Bethany Moore, Melissa Lehti-Shiu and Shin-Han Shiu
78 Machine learning can characterize biogeography on a global scale using port microbiomes Ryan Ghannam, Laura Schaerer, Timothy Butler and Stephen Techtmann
79 An automated pipeline to track genomic variation over time in a bacteriophage infecting Vibrio cholerae Angus Angermeyer and Kimberley Seed
81 Assessing Selective Pressure in Fasciola hepatica Olukayode Daramola, Jane Hodgkinson and Steve Paterson
82 Potential genetic biomarkers for dilated cardiomyopathy Ammar Eljack and Sadik Khuder
83 Comparison of three libraries for 10x Genomics single cell immune TCR repertoire profiling Yuan Qi, Jin Seon Im and Xiaoping Su
84 Investigating the altered transcriptional and epigenetic programs of TAZ-CAMTA1 and YAP-TFE3 gene fusions driving sarcoma tumorigenesis and metastasis Michael Chimenti, Nicole Merritt, Keith Garcia, Dushyandi Rajendran, Zhen-Yuan Lin, Xiaomeng Zhang, Katrina Mitchell, Colleen Fullenkamp, Anne-Claude Gingras, Kieran Harvey and Munir Tanas
85 Broadening the Impact of Bioinformatics in Research and Education Jessica Holmes, Jenny Drnevich, Lois Hoyer and Christopher Fields
86 Hierarchical cell type classification using mass, heterogeneous RNA-seq data from human primary cells Matthew Bernstein and Colin Dewey
87 A cell-based probabilistic approach unveils the concerted action of miRNAs Shelly Mahlab-Aviv, Nathan Linial and Michal Linial
88 Network-based integration of transcriptomic, proteomic, phospho-proteomic and acetylome datasets in M. truncatula Junha Shin, Harald Marx, Catie Minogue, Alireza Fotuhi Siahpirani, Deborah Chasman, Jean-Michel Ané, Joshua Coon, Michael Sussman and Sushmita Roy
89 A predictive classifier to distinguish nuclear receptor binding sites involved in hepatic Cytochrome P450 gene regulation Omar Kana and Sudin Bhattacharya
90 Deciphering the regulatory network controlling nitrogen fixation in plants Sara Knaack, Daniel Conde, Lucas Gontijo Silva Maia, Thomas Irving, Kelly Balmant, Matthew Crook, Christopher Dervinis, Ryan Folk, Heather Kates, Wendell Pereira, Robert Guralnick, Douglas Soltis, Pamela Soltis, Jean-Michel Ane, Matias Kirst and Sushmita Roy
91 miRDriver: A Tool to Infer Copy Number Derived Gene miRNA Networks in Cancer Banabithi Bose and Serdar Bozdag
92 Stage-specific marker discovery in human induced pluripotent stem cell derived cardiomyocytes with single cell RNA sequencing. Xing Li, Sherri Biendarra and Timothy Nelson
93

PhyloPen: An Interactive Browsing and Editing Tool for Phylogenetic Trees

Anthony Wehrer, Curtis Lisle and Charles Hughes
94

Genomic Features Distinguishing a Defensive Ant Mutualist and Free-living Related Bacteria

Jennifer Bratburd and Cameron Currie
95

Isometric scaling of virus growth kinetics across the domains of life

Herry Jin and John Yin
96

Complete Genome Sequence of a USA100 MRSA Strain: Lessons Learned Using Both Illumina and Nanopore Data for de novo Assembly

George Chlipala, Zhengdeng Lei, Pinal Kanabar, Kevin Kunstman, Koh Okamoto, Kyle J. Popovich, Stefan Green and Mark Maienschein-Cline
97

Rice Genes Prioritization for Cold Tolerance Using Random Walk with Restart on Multiplex Heterogeneous Network

Cagatay Dursun, Naoki Shimoyama, Mary Shimoyama, Michael Schlappi and Serdar Bozdag
98

Creating and characterizing vocal fold microbiota in gnotobiotic mice

Ran An
99

An integrative computational modeling approach to identify repurposable metabolic drug targets in CD4+ T cells

Bhanwar Lal Puniya, Bailee Lichter, Robert Moore, Sydney Townsend, Alex Ciurej, Ab Rauf Shah, Matteo Barberis and Tomas Helikar
100

Gene Prediction and Genome Functional Annotation of the Almond ‘Nonpareil’ genome

Wilberforce Zachary Ouma, Tea Meulia, Thomas Gradziel and Jonathan Fresnedo Ramirez

- top -

PROGRAM SCHEDULE



Talk Abstracts are available on the App and Here
Programme PDF is available Here

Sunday, May 19, 2019
Go directly to: Monday, May 20 - Tuesday, May 21 - Wednesday, May 22
All events on Sunday will occur at the Discovery Building
Start Time End Time  
8:30 AM 5:30 PM Registration in Discovery Building Lobby
9:00 AM 12:00 PM Workshop on UCSC Genome Browser (Orchard View Room)
12:00 PM 1:00 PM Lunch on Own
1:00 PM 5:00 PM Workshop on Docker (Orchard View Room)
5:30 PM 7:00 PM Welcome Reception in Discovery Building Lobby
Music by Sonora Strings

- top -

Monday, May 20, 2019
Go directly to: Sunday, May 19 - Tuesday, May 21 - Wednesday, May 22
All events Monday-Wednesday will occur at the Union South Building
Start Time End Time The Marquee Fifth Quarter Varsity Hall I
8:30 AM 3:30 PM Registration in Union South - Varsity Hall Lounge
9:00 AM 9:30 AM Welcome    
9:30 AM 10:30 AM Keynote #1 - Sunduz Keles    
10:30 AM 11:00 AM Coffee break in Varsity II & III
11:00 AM 12:00 PM General Track - Macromolecular Structure & Function Precision Medicine I Education I
12:00 PM 1:30 AM Lunch on own or Lunch N Learn Recruiting Roundtable
1:30 PM 2:30 PM General Track - Gene Regulation I Precision Medicine II Education II
2:30 PM 3:00 PM Coffee break in Varsity II & III
3:00 PM 5:00 PM General Track - Comparative Genomics & Phylogenetics Precision Medicine III Education III
5:00 PM 6:00 PM Keynote #2 - Dan Knights    
7:00 PM 10:00 PM     Student Led Workshop

- top -

Tuesday, May 21, 2019
Go directly to: Sunday, May 19 - Monday, May 20 - Wednesday, May 22
All events Monday-Wednesday will occur at the Union South Building
Start Time End Time The Marquee Fifth Quarter Varsity Hall I
8:30 AM 5:30 PM Registration in Union South - Varsity Hall Lounge
9:00 AM 10:00 AM Keynote #3 - Quaid Morris    
10:00 AM 10:30 AM Coffee break in Varsity II & III
10:30 AM 12:00 PM General Track - Gene Regulation II Microbiome I RNA Sequence to Structure I
12:00 PM 1:30 PM Poster Session #1 (odd numbered) in Varsity II & III (boxed lunches)
1:30 PM 2:30 PM General Track - Networks I Microbiome II RNA Sequence to Structure II
2:30 PM 3:00 PM Coffee break in Varsity II & III
3:00 PM 5:00 PM General Track - Algorithms & Machine Learning Microbiome III RNA Sequence to Structure III
5:00 PM 6:00 PM Keynote #4 - Hae Kyung Im    
7:00 PM 10:00 PM Game Night Networking Event at The Sett

- top -

Wednesday, May 22, 2019
Go directly to: Sunday, May 19 - Monday, May 20 - Tuesday, May 21
All events Monday-Wednesday will occur at the Union South Building
Start Time End Time The Marquee Varsity Hall I
8:30 AM 3:30 PM Registration in Union South - Varsity Hall Lounge
9:00 AM 10:00 AM Keynote #5 - R. Stephanie Huang  
10:00 AM 10:30 AM Coffee break in Varsity II & III
10:30 AM 12:00 PM General Track - Networks II General Track - Clinical and Health Informatics I
12:00 PM 1:30 PM Poster Session #2 (even numbered) in Varsity II & III (boxed lunch)
1:30 PM 2:30 PM General Track - Genome Informatics General Track - Clinical and Health Informatics II
2:30 PM 3:00 PM Coffee break in Varsity II & III
3:00 PM 4:00 PM Keynote #6 - Mark Craven  
4:00 PM 4:30 PM Award Ceremony and Closing  

- top -

Call For Special Sessions



Coming soon.


- top -

CALL FOR SUBMISSIONS



Links in this page: General Submission Information | PLOS Computational Biology/PLOS One Submission Information | Abstracts for Oral Presentation | Poster Information | Questions


General Submission Information

All Submissions for GLBIO: Click here to submit

Submissions are invited for full papers, oral presentation abstracts, and posters at the 13th Great Lakes Bioinformatics Conference (an official conference of the International Society for Computational Biology). This is an invitation to scientists and professionals working in the fields of bioinformatics and computational biology to submit high quality original research papers for presentation at GLBIO 2019. Authors of papers and oral abstracts that are accepted to the conference will present their work at the conference (longer talks for full papers, shorter talks for the abstracts). GLBIO 2019 does not have a conference proceedings, but accepted full papers will be considered by PLOS Computational Biology or PLOS One for inclusion in a special issue devoted to GLBIO 2019.

A wide definition and inclusion of bioinformatics/computational biology will be considered, and topics of interest include the following:

  • Algorithms & Machine Learning
  • Bioinformatics Education
  • Biostatistics
  • Cheminformatics
  • Clinical & Health Informatics
  • Databases, Ontologies & Biocuration
  • Disease Models & Molecular Medicine
  • Epidemiology & Biodiversity
  • Evolutionary, Comparative Genomics & Phylogenetics
  • Gene Regulation & Transcriptomics
  • Genome Informatics
  • Image Analysis
  • Macromolecular Structure & Function
  • Metagenomics
  • Microbiome Informatics
  • Network Biology
  • Proteomics & Metabolomics
  • Sequence Analysis
  • Synthetic Biology
  • Systems Modeling
  • Text Mining & Natural Language Processing
  • Visualization


Key dates: Click here Conference website: www.iscb.org/glbio2019

Submission website: https://easychair.org/conferences/?conf=glbio2019

Special Sessions: Authors can request consideration by special sessions in Easychair. Please carefully review the information below before submitting in Easychair.

Sessions that will consider Full papers and Abstracts

 

Sessions that will consider Abstracts only


Other Sessions


- top -


PLOS Computational Biology/PLOS One Submission Information

Full Papers for Oral Presentation submissions to GLBIO 2019 should be prepared using PLOS ONE or PLOS Computational Biology format (see below on how to choose the journal). Submissions to GLBIO should be made via Easychair and the deadline is February 11, 2019.

Authors of all full papers that are accepted for oral talks at the conference will have the option of being considered for publication in a PLOS ONE/PLOS Computational Biology Collection devoted to the conference. Prior to the submission to the PLOS manuscript submission system, authors who decide to proceed with this option will be expected to address the reviewers’ comments received during the GLBIO review process (and if the authors desire, potential feedback from the audience received during their GLBIO oral talk presentation). Please note that such revised papers will be subject to additional peer review by the chosen journal (see below), where members of the PLOS Editorial Board who will handle the papers will, whenever possible, invite the same reviewers that have participated in the GLBIO review process.

We will follow up after the conference with the authors of all full papers that are accepted for oral talks at GLBIO regarding instructions on how to submit to the GLBIO 2019-related PLOS ONE/PLOS Computational Biology Collection. Their submissions to PLOS will be accepted between April 1, 2019 and June 30, 2019 (note that the authors will hear back from GLBIO about their paper's decision by March 25, 2019).

The authors of the best papers (as judged by the GLBIO Program Committee) will be interviewed about their work for a PLOS Collections blog.

Note that in the past, the average time to publication for the GLBIO papers submitted to PLOS was about half the overall PLOS ONE average.

Authors are responsible for any fees or expenses in regards to the PLOS ONE/PLOS Computational Biology Collection publication of their paper. Currently, the PLOS ONE article processing charge is $1,595 and the Collection Surcharge is $500, totaling to $2,095. The PLOS Computational Biology article processing charge is $2,350 and the Collection Surcharge is $750, totaling to $3,100. We suggest that you check this link for any potential updates to the publication fees.

The choice of the journal (PLOS ONE versus PLOS Computational Biology) should be made by the authors based on how well the scope of their paper matches the scope of the given journal. PLOS ONE scope is described here. PLOS Computational Biology scope is described here. PLOS Computational Biology scope can be thought of as being more restrictive than that of PLOS ONE, e.g., PLOS Computational Biology papers "should provide profound new biological insights". So, all papers that are accepted for oral talks at the GLBIO conference should by default match well the scope of PLOS ONE, and a subset of them might match well the scope of PLOS Computational Biology. If an accepted GLBIO paper is submitted to PLOS Computational Biology but it is judged that the paper's scope does not match the scope of the journal, the paper will be transferred to PLOS ONE instead. If both journals fit the scope of the given paper well, a factor that the authors might wish to consider when choosing the journal could be the associated publication fees (see above).

For full paper submissions, GLBIO does not accept work previously published through a peer-review mechanism, or work that is/will be under review elsewhere. This is because full paper submissions to GLBIO are considered as submissions to both GLBIO and PLOS ONE/Computational Biology. If authors wish to submit to GLBIO their work that was published or is/will be under review elsewhere, they should do so as a short abstract rather than a full paper. Please note that conference presentations, posting on recognized preprint servers (such as Arxiv, Biorxiv and PeerJ preprints), or posting on a personal or employer's website do not constitute prior publication. In case of doubt, please contact This email address is being protected from spambots. You need JavaScript enabled to view it.

- top -


Abstracts for Oral Presentation


Abstracts for Oral Presentation submissions to GLBIO 2019 should be a page in length (approximately 600 words) and have no figures. Submission deadline in Easychair is March 11, 2019.

All accepted abstracts for oral presentations will have the chance to publish their work in the ISCB Community Journal and will be contacted after acceptance about this opportunity.

- top -


Poster Information


Abstracts for Poster submissions to GLBIO 2019 should be half a page in length (approximately 300 words) and have no figures. Submission deadline in Easychair is March 18, 2019 for Posters and May 9, 2019 for Late Breaking Posters.

We also encourage all participants to submit their posters and slides (for free) to The Great Lakes Bioinformatics Conference (GLBIO) conference channel in the ISCB Community Journal.

Poster Display Size: - When preparing accepted posters please note that your poster should not exceed the following dimensions: 46 inches wide by 46 inches high. There will be 1 poster per side on the each poster board.

Valley Expo & Displays

Poster Presenter Orders
Presenters may place an order by registering for the GLBIO event at this link.
https://valleyexpodisplays.boomerecommerce.com/Pages/Customer/RegisterStep1.aspx
If they need immediate assistance please contact Brittany Konkol at
This email address is being protected from spambots. You need JavaScript enabled to view it. or 815-873-1500 ext. 151.

Uploading Artwork
Copy and paste this link into your browser: https://bit.ly/2SRFm8K

Click “Send”

Enter email address & subject.
Click “Browse” to locate file(s) for upload
Enter any additional descriptive text.

Click “Send”

Poster Presenter Graphics
Valley will produce a graphics for ISCB presenters as outlined below.

Description Includes Cost
42" x 36" poster, printed on white paper stock Delivery

$55.00 each, ordered at least 14 days in advance

$66.00 each, ordered 13-7 days in advance

46" x 46" poster, printed on white paper stock Delivery

$70.00 each, ordered at least 14 days in advance

$84.00 each, ordered 13-7 days in advance

 

Orders received and or proofs approved fewer than (7) days prior to delivery will be done based
on availability and may not be produced.

Valley will communicate directly with your presenters, providing a template and graphics
requirements instructions. All posters ordered will be at the expense of the presenter
submitting the order.

- top -


Questions

For any GLBIO questions, please contact: Bel Hanson, ISCB Operations and Programs Manager, at This email address is being protected from spambots. You need JavaScript enabled to view it.


- top -

Accomodations



DoubleTree by Hilton Hotel Madison

Our award-winning DoubleTree by Hilton Madison hotel is located in iconic downtown Madison,
Wisconsin. Situated on the University of Wisconsin-Madison campus, we are in walking distance of the vibrant shopping, dining and entertainment district, State Street, as well as other downtown attractions.  Complimentary WiFi is available throughout the hotel, free shuttle to the airport and all attractions within a two-mile radius, or park your car in the safe, complimentary hotel parking bay.

 

  • Room Rate: $159.00 per night
  • Reservations must be received by 4/19/2019

Please use one of the following to book your reservation:

  • Book online at www.doubletreemadison.com Group code: GLB
  • Call direct at (608) 251-5511 or toll free at (800) 222-TREE. Please mention group code: GLB

- top -


Graduate Madison

Our hotel rooms are ready for a night like you’ve never had before, where little moments of surprise and discovery will meet you down every corridor and around each corner, including Malin + Goetz amenities and complimentary Wi-Fi. Valet parking is available at the Graduate Madison for a discounted rate of $20.00 per car, per night with in/out privileges. Be prepared to be inspired.

  • Room Rate: $139.00 per night
  • Reservations must be received by 4/7/2019

Please use one of the following to book your reservation:

  • Book online with our private booking link: GLBIO 2019
  • Call direct at 608-257-4398. Please ask to make a reservation within the Great Lakes
    Bioinformatics Conference (GLBIO) group block.

- top -


Lowell Center

Located just steps from State Street shops and Madison’s vibrant Capitol Square, Lowell Center offers hotel accommodations—including comfortable guest rooms, an updated fitness center, inviting outdoor patios and the area’s largest indoor pool. Guests enjoy mini refrigerators, Bath & Body Works® toiletries, and complimentary wireless access and breakfast. Overnight parking onsite at Lowell Center is $10.00 per night per vehicle (spaces are limited). Off-site parking in Lot 83 – the Fluno Center garage – is complimentary.

  • Room Rate: $124.00 for standard rooms / $140 for deluxe rooms per night
  • Reservations must be received by 4/18/2019

Please use one of the following to book your reservation:

  • Call direct at (608) 256-2621 or toll free at (866) 301-1753. Please ask to make a reservation
    within the Great Lakes Bioinformatics Conference (GLBIO) group block.

- top -

VENUE



GLBIO 2019 will take place in two building
at the University of Wisconsin-Madison.
 
Union South                     Wisconsin Institute for Discovery   
1308 W Dayton St           330 N Orchard St
Madison, WI 53715         Madison, WI 53715 
 

 

 


- top -

Exclusively for members

  • Member Discount

    ISCB Members enjoy discounts on conference registration (up to $150), journal subscriptions, book (25% off), and job center postings (free).

  • Why Belong

    Connecting, Collaborating, Training, the Lifeblood of Science. ISCB, the professional society for computational biology!

     

Supporting ISCB

Donate and Make a Difference

Giving never felt so good! Considering donating today.