POSTER PRESENTATIONS

Poster Session A - Tuesday, 12:25 pm - 2:00 pm, with lunch
Location: Alumni Hall

Poster Session B - Wednesday, 12:20 pm - 2:00 pm, with lunch
Location: Alumni Hall

Presenters:

If you are in Session A, you may set up your poster any time between 8:30 am and Noon on Tuesday and must remove your poster by 5pm on Tuesday. All remaining posters will be discarded.
If you are in Session B, you may set up your poster any time between 8:30 am and Noon on Wednesday and must remove your poster by 5pm on Wednesday. All remaining posters will be discarded.

As of May 17, 2016. Subject to change without notice.

AUTHORS	TITLE	BOARD #	SESSION
Nithum Thain, Aldo Crossa , Barun Mathema, Ted Cohen, Leonid Chindelevitch	StackTB: a machine learning-based method for classifying TB strains from MIRU-VNTR data	1	A
Cancelled Olaitan Awe, Angela Makolo and Segun Fatumo	The Interrelationships Between Ebola and Lassa virus: A Comparative Genomics Perspective	2	B
Jiun Yen, Glenda Gillaspy and Ryan Senger	A genome-scale algorithmic approach for metabolic engineering of plants	3	A
Waldo Acevedo, Danilo González and Eduardo Agosin	Docking and Molecular Dynamics Studies on the Interaction of Steviol Glycosides with Human Bitter Taste Receptors	4	B
Waldo Acevedo, Danilo González and Eduardo Agosin	Docking and Molecular Dynamics Studies on the Interaction of Non-caloric Sweeteners with Human Sweet Taste Receptor	5	A
Armin Rouhi, Janneke Wit and James Wasmuth	Investigating the usefulness of long-read sequencing technologies on the study of large eukaryotic gene families	6	B
Cancelled Robert Flight and Hunter Moseley	Visualizing the Effects of Data Transformations on Errors	7	A
Jeremy Cox, Richard Ballweg, Prakash Velayutham, David Haslam and Alexey Porollo	An Accurate RNAseq-based Protocol for Metagenomic Taxonomy Classification	8	B
Valeriia Sherina and Matthew McCall	Modeling of non-detects in qPCR	9	A
Dirk Bullock	Statistical Analysis of Differential Gene Expression in Spinal Nerve Ligated Rats using RNA-seq	10	B
Albi Celaj, Nozomu Yachie, Louai Musa, Minjeong Ko, Marinella Gebbia, Shijie Zhou, Benjamin Grys, Tina Sing, Tiffany Fong and Frederick Roth	Widespread complex genetic bases of ABC transporter mediated drug resistance in S. cerevisiae revealed through an engineered population profiling strategy	11	A
Khadija El Amrani, Nancy Mah, Miguel Andrade-Navarro and Andreas Kurtz	Gene expression profile based sample classification	12	B
Devendra Biswal, Manish Debnath, Ruchishree Konhar, Jean Valrie and Pramod Tandon	Age estimation for the genus Cymbidium (Orchidaceae: Epidendroideae) with implementation of fossil data calibration using molecular markers (ITS2 & matK) and phylogeographic inference from ancestral area reconstruction.	13	A
Devendra Biswal, Manish Debnath, Srinivasan Ramachandran, Anupam Chatterjee and Veena Tandon	Ancestral area reconstruction and genetic variation of Paragonimus westermani (Trematoda: Digenea) and its position within the genus Paragonimus: an in silico study using ITS2 and COXI sequences	14	B
Ruipeng Lu and Peter K. Rogan	Predicting cis-regulation in human promoters by information density-based clustering of heterotypic transcription factor binding sites	15	A
Jean-Michel Garant, Michelle S. Scott and Jean-Pierre Perreault	Towards better identification of potential RNA G-Quadruplexes using machine learning	16	B
Vincent Boivin, Sonia Couture, Sherif Abou Elela and Michelle Scott	Finding novel tragets of snoRNAs influencing alternative splicing and gene expression.	17	A
Kimberly MacKay, Zoe Gillespie, Brett Trost, Christopher Eskiw and Anthony Kusalik	Computational Prediction of Key Transcription Factors Involved in Regulating the Cellular Response to Rapamycin	18	B
Nathaniel Bryans, Chenzhe Qian and A.P. Jason de Koning	Advances in Detecting Convergent Sequence Evolution at Phylogenomic Scales	19	A
Larisa Fedorova, Alexei Fedorov, Rajib Dutta, Shuhao Qiu and Ahmed Al-Khudhair	Cryptic Genetic Relatedness Among 1000 Human Genomes	20	B
Prabhjeet Basra, Gabriela Bernal-Astrain and Alex Wong	Covariation between rates of substitution and levels of quinolone resistance in clinical isolates of Escherichia coli	21	A
Fazle Faisal and Tijana Milenkovic	Novel strategies for dynamic analysis and alignment of biological networks and their interdisciplinary applications	22	B
Frances Hauser, Portia Tang, Ryan Schott, Gianni Castiglione, Alexander Van Nynatten, Elise Heon and Belinda Chang	Application of codon-based evolutionary models in the prediction and validation of pathogenic mutations	23	A
Sonja Dunemann, Matthew Workentine, Cameron Goater, John Gilleard, James Wasmuth and Doug Colwell	An -omics approach to improve diagnosis and treatment of the lancet liver fluke	24	B
Pamela Wu and David Fenyo	Deciphering epigenetic signatures underlying coding status and cell-type specificity	25	A
Maureen Smith, Redmond Smyth, Roland Marquet and Max von Kleist	MIMEAnTo– A bioinformatics tool to profile functional RNA	26	B
Katie Ovens, Ian McQuillan, Patsy Gómez-Picos and Brian Eames	Analysis of biclustering algorithms using high dimensional gene expression data from skeletal tissues	27	A
Muhammad Ayaz Anwar and Sangdun Choi	Complex-proficient while being signaling-deficient: insight into the effects of mutations on TLR4 function	28	B
Ben Busby	NCBI and Regional Data Science, Bioinformatics and Genomics Hackathons!	29	A
Eric Ho	Codon Usage Under the Lens of Machine Learning	30	B
Matthew R. Weber, Zachary D. Stephens, Liudmila S. Mainzer, Matthew Hudson, B. F. Francis Ouellette and Morgan Taschuk	Statistical Models to Capture Mutational Properties for NextGen Sequencing Data	31	A
Chacha Issarow	Assessment of the vaccine on tuberculosis control using age-structured mathematical model	32	B
Lihong Yin, Farahnaz Rahmatpanah, Michael McClelland, Dan Mercola, Jun Ye and Zhenyu Jia	Identification of age associated differentially expressed genes in prostate cancer	33	A
Shuying Sun and Xiaoqing Yu	Challenges and opportunities of differential methylation identification using bisulfite sequencing data	34	B
Amanda Ernlund and Shubha Dhage	Redefining the breast tumor margin utilizing a computational genomic ruler of tumor and tumor-adjacent normal tissue	35	A
Deena Gendoo, Alexandra Pandyra, Peter Mullen, Joseph Longo, Jenna van Leeuwen, Linda Penn and Benjamin Haibe-Kains	Identification of Dipyridamole Analogues for the Treatment of Acute Myeloid Leukemia using Computational Pharmacogenomics Approaches	36	B
Abraham Moller and Chun Liang	Mapping environmental virus-host interactions in solar salterns through metagenomics	37	A
Fabien Dupuis-Sandoval, Michelle Scott, Douglas Wu, Ryan Nottingham, Sherif Abou Elela and Alan Lambowitz	Study of alternative snoRNAs characterization methods by deep sequencing	38	B
Daniel Morris, Ram Khattri, Stephanie Bilinovich and Thomas Leeper	Fragment Warheads for Selective Drug Design against Bacterial Glutaredoxins	39	A
Piyush Priya and Gitanjali Yadav Terpene	Synthases: The Mechanistically Intriguing Family of Enzymes Generating the Enormous Terpenome	40	B
Nil Sahin, Erin Styles, Adrian Verster, Quaid Morris and Brenda Andrews	A Morphology Profile Pipeline for Genome-wide Screens in Saccharomyces cerevisiae	41	A
Daniel Kurtz, Gregory Moyerbrailean, Allison Richards, Omar Davis, Chris Harvey, Adnan Alazizi, Donovan Watza, Yoram Sorokin, Nancy Hauff, Francesca Luca and Roger Pique-Regi	Gene expression networks of transcriptional response to 78 cellular environment perturbations	42	B
Madara Hetti Arachchilage, Brett Lowden and Helen Piontkivska	Mapping multi-protein-interface-interaction network in HIV-1 pre-integration complex (PIC)	43	A
Marilyn Hayden, Frank Drews and Lonnie Welch	Next Generation Pathway Analysis: Increasing Sensitivity and Accuracy by Incorporating Regulatory Elements	44	B
Kai Wang and Chun Liang	CRF: a web server for detecting CRISPRs in microbe genome	45	A
Alexandra Taraboletti and Leah Shriver	Cuprizone intoxication perturbs central nervous system metabolism	46	B
Yixun Li, Luis Rueda and Alioune Ngom	Prediction of High-throughput Protein-protein Interactions Using Short Linear Motifs	47	A
Ewy Mathe, Elizabeth Baskin and Senyang Hu	Leveraging integrative gene expression and metabolomics analysis to define molecular cancer signatures	48	B
Shirley Hui, Asha Rostamianfar and Gary Bader	Large-scale GWAS pathway analysis identifies several breast cancer susceptibility pathways	49	A
Mehran Karimzadeh and Michael M. Hoffman	Transcription factor expression and its effects on binding site occupancy and motif preference	50	B
Seyed Ali Madani Tonekaboni, Laleh Soltan Ghoraie and Benjamin Haibe-Kains	Identification of transcriptional patterns conserved across in vitro and in vivo cancer samples	51	A
Lina Wadi, Mona Meyer and Jüri Reimand	Dramatic impact of knowledge accumulation on pathway enrichment analysis	52	B
Venkata Manem, Sadiq Saleh, Nicholas Bertos, Morag Park and Benjamin Haibe-Kains	Using networks to identify key players in breast cancer microenvironment interactions	53	A
Michael Dong and Nicholas Provart	Protein-ligand interaction exploration based on proteome-wide tertiary structure prediction and further in vitro validation	54	B
Ruth Isserlin, Mike Kucera, Veronique Voisin and Gary D. Bader	Enrichment Map Pipeline– a set of Cytoscape apps to visualize, explore and summarize pathway enrichment results	55	A
Peter Ulintz, Jeanne Geskes, Melissa Coon, Patricia Tamsen, Elizabeth Ketterer, Angela Chidester, Christopher Gates, Erika Koppe, Craig Johnson, Elena Stoffel, Richard McEachin and Robert Lyons	Performance comparison of targeted gene panel sequencing technologies using several cancer sample types	56	B
Nirvana Nursimulu, Swapna Seshadri and John Parkinson	How to be a good parasite	57	A
Zunping Luo, Lingdi Zhang, Pavitra Rao, Swapna Uplekar, Daniel Hupalo and Jane Carlton	Genome Sequencing and De Novo Assembly of a Clinical Isolate of Plasmodium vivax Malaria from India Using the Oxford Nanopore MinION	58	B
Shruti Srivastava, Derek McKay and James Wasmuth	In-silico investigation of parasite proteomes to predict immune mimicking proteins	59	A
Mohamed Helmy, Alexander Crits-Christoph, Omar Wagih and Gary Bader	Can-VD: Data Standard and Online Resource for Reporting Mutations Impact on Cancer Protein Interaction Networks	60	B
Joseph Haddad, Anthony Deeter, Zhong-Hui Duan and Timothy O'Neil	Analysis of Parallel Bayesian Network Learning	61	A
Olivia S. Hershey and Hazel A. Barton	Starving in the Dark: The Impact of Ultra-Small Cells on a Groundwater Microbial Community	62	B
Cancelled Minggao Liang, Liis Liis Uusküla-Reimand, Shiao Yuan Huang, Huayun Hou, Alejandra Medina-Rivera and Michael Wilson	Dissecting the properties of spatially-coordinated combinatorial transcription factor binding using ChIP-exo and evolutionary conservation	63	A
Monjur Morshed, Brian Ingalls and Silvana Ilie	An efficient finite-difference strategy for sensitivity analysis of stochastic models of biochemical systems	64	B
Fiona Whelan and Michael Surette	sl1p: A computational pipeline for the processing and analysis of 16S rRNA microbiome sequencing data	65	A
Cancelled Emilee Holtzapple, K. Wyatt McMahon, Lonnie Welch and Karen Coschigano	RelA as a Potential Regulator of Inflammation and Tissue Damage in Streptozotocin-Induced Diabetic STAT5 Knockout Mice	66	B
Huayun Hou, Liis Uusküla-Reimand, Payman Samavarchi-Tehrani, Matteo Vietri Rudan, Minggao Liang, Jüri Reimand, Suzana Hadjur, Anne-Claude Gingras and Michael Wilson	Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders	67	A
Swapna Seshadri, Zhongming Hu, Verena Brand, Xuejian Xiong, Michael E. Grigg, Andrew Emili and John Parkinson	Applying a co-elution strategy to generate the first genome scale protein interaction network for T. gondii	68	B
Mary Halpin and Helen Piontkivska	Mutation patterns in Ebola may shine light on future outbreaks	69	A
Zhengdeng Lei, Mark Maienscheincline, Hong Hu, Pinal Kanabar, Morris Chukhman, George Chlipala, Neil Bahroos, Ankit Desai and Roberto Machado	Identification of subtypes of sickle cell disease with different prognosis and severity	70	B
Kevin Ha, Benjamin Blencowe and Quaid Morris	Systematic analysis of alternative polyadenylation regulatory mechanisms from RNA-Seq	71	A
Kelly Boyd, Amanda Misch, Emma Highland, Catherine Putonti and Sushma Reddy	Extracting more from transcriptomes: assessing their utility for comparative analyses across birds	72	B
Chris Cremer and Quaid Morris	Deconvolving gene expression profiles for tumor populations with prior frequency information	73	A
Midhun Kathanaruparambil Sukumaran, Marc R. Roussel and Brian P. Ingalls	A novel model reduction approach for the Chemical Master Equation	74	B
Brian Powell	Large Scale Analysis of Predicting Subcellular Locations of Proteins Represented by Chaos Game Theory	75	A
Jeff Wintersinger, Amit Deshwar and Quaid Morris	Scaling cancer subpopulation phylogeny reconstruction to thousands of tumors	76	B
David Bujold	GenAP: A computing platform for life sciences research	77	A
Sebastian Raschka, Leslie A. Kuhn, Weiming Li, Mar Huertas and Anne M. Scott Screenlamp:	Screenlamp: A software framework for hypothesis-driven ligand discovery based on virtual screening and machine learning	78	B
Katherina Baranova, Eliseos Mucaki, Dimo Angelov, Dan Lizotte and Peter Rogan	Cisplatin Response Prediction in Recurrent Bladder Cancer using Biochemically-inspired Machine Learning	79	A
Alysha Cypher and Brian Bagatto	Lipid composition and cardiovascular health of Danio rerio larvae with maternal and embryonic exposure to endocrine disruptors (EDs)	80	B
Sreeskandarajan Sutharzan, Chun Liang and John Karro	FindIR2: A MATLAB-based tool for accurate detection of imperfect inverted repeats in DNA sequences	81	A
Brittany Baur and Serdar Bozdag	Reverse engineering gene regulatory networks from structural and epigenetic data	82	B
Ryan Schott, Daniel Gow and Belinda Chang	RSAT: A toolkit for rapid generation and analysis of protein-coding sequence datasets	83	A
Shagun Sharma, John Senko and Mathew Lee	Comparision of Response of Pristine Soil Microbial Community to the Intrusion of Coal Mine-Derived Acid Mine Drainage from Two Different Sites	84	B
Parisa Mazrooei, Tahmid Mehdi, Anna Goldenberg and Mathieu Lupien	Identifying the role of noncoding single nucleotide variants (SNVs) on transcription factors activity in liver cancer	85	A
Jennifer K. Holmes, Rachael A. Wasikowski, Michael W. Scott, Frank McFarland, Erich Grotewold, Andrea I. Doseff and John Gray	Phylogenomic Analysis of the TRAF family of Co-regulators in Maize	86	B
Mark Maienschein-Cline, Sophiya Karki, Zhengdeng Lei, Pinal Kanabar, George Chlipala, Hong Hu, Morris Chukhman, Neil Bahroos and Marcus Clark	Single-cell RNA sequencing reveals allele-specific gene expression and rearrangement during V-J recombination	87	A
Gungor Budak and Sarath Janga	Seten: A tool for systematic identification and comparison of processes, phenotypes and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles	88	B
Nehme El-Hachem	Decoding compound mechanism of action using integrative pharmacogenomics	89	A
Virginia Saulnier, Alexa Badalamenti, Jeffrey Ng, Shyam Shah and Dr. Heather Wheeler	Predicting Gene Regulation in Diverse Global Populations	90	B
Mickaël Mendez, Eric G Roberts and Michael M Hoffman	Semi-automated transcriptome annotation with SegRNA	91	A
Beatriz E. Lujan-Toro, Connie Sauder, Owen Rowland and Sara L. Martin	Whole Genome Assembly of Camelina microcarpa, a Resource for the Improvement of the Oilseed Crop Camelina sativa	92	B
Prashant Kumar Kuntala	Gene regulation in Chagas Disease	93	A
Maureen Stolzer, Han Lai, Minli Xu, Rosanna G Alderson, Katherine Siewert and Dannie Durand	NOTUNG-DM: Software for Reconstructing the Evolutionary History of Multidomain Proteins	94	B
Seth Munholland, Claudia Dinatale and William Crosby	Innovating Traditional de novo Genomics Tools to Overcome Traditional Requirements of High Power Computational Platforms Under Modern Financial Restrictions	95	A
Claire Bertelli, Adrian C Lim, Gemma Hoad, Geoffrey L Winsor and Fiona S L Brinkman	Enabling phyletic-based comparison and visualization of genomic islands for tens to hundreds of microbial genomes	96	B
Laurynas Kalesinskas, Evan Cudone and Catherine Putonti	S-plot 2.0: A computational tool for the rapid identification of horizontally acquired elements within genomic sequences	97	A
Silva Konini, Jake O'Brien, Chun Peng and E J Janse van Rensburg	Random Walk with Resistance and Solving Laplace’s Equation on MicroRNAs-Gene Interaction Networks	98	B
Anthony Deeter, Joseph Haddad, Zhong-Hui Duan and Mark Dalman	Inferring Genetic Interactions using PubMed	99	A
Guenter Tusch, Shahrzad Eslamian, Krishna Nadiminti, Bhanu Yandrapragada and Raveena Pendyam	Modeling Time Patterns in Gene Expression Profiling	100	B
Pingzhao Hu, Yang Wang and Huyen Le	Gene Set – based Deep Neural Network Learning for Disease Classification	101	A
Christopher Cameron, Josée Dostie and Mathieu Blanchette	Improved Hi-C Contact Maps by Adaptive Density Estimation	102	B
Julie A. Shay, Claire Bertelli, Bhavjinder K. Dhillon and Fiona S.L. Brinkman	The utility of draft bacterial genomes for gene function analysis and genomic island prediction	103	A
Michael Levy, Kristin Kernohan, Yan Jiang and Nathalie Berube	Regulation of genome-wide CTCF binding by MeCP2	104	B
George Chlipala, Ankur Naqib, Daniel May, Mark Maienschein-Cline, Pinal Kanabar, Zhengdeng Lei, Vincent Hu, Morris Chuckman, Orjala Jimmy, Stefan Green and Bahroos Neil	Improving Taxonomic Annotation of 16S Amplicon Sequencing Data from Environmental Samples	105	A
Elham Rezaei, Brett Trost, Daniel Hogan, Tony Kusalik, Alan Rosenberg and The Bbop Study Consortium	Biologically-Based Approach to Evaluate Classification Criteria for Chronic Childhood Arthritis	106	B
Cancelled Wei Pan	Heterogeneity decreases diversity	107	A
Laurynas Kalesinskas, Travis K Price, Evann E Hilt, Alan J Wolfe and Catherine Putonti	Facilitating Comparative Genomic Analysis of Novel Microbes: Examination of Lactobacillus crispatus in the Female Urinary Microbiome	108	B
Cancelled Chris Walsh	Transcriptome analysis of diet indeed obesity in Zebrafish	109	A
Majed Shaheen, Travis Price, Evann Hilt, Krystal Thomas-White, Alan Wolfe and Catherine Putonti	Analyzing Bacteria within the Bladder Microbiota	110	B
Farhad Maleki and Anthony Kusalik	The Effect of Different Gene Set Scores on the Accuracy of Gene Set Enrichment Analysis Methods	111	A
Kun Nie and Quaid Morris	Computational analysis of target specificity of Drosophila double-stranded RNA-binding protein Staufen	112	B
Rajneesh Srivastava, Gungor Budak and Sarath Chandra Janga	Transcriptome analysis of developing lens reveals hundreds of novel transcripts and abundance of skipped exon as well as retained intronic splicing events	113	A
Alexander Van Nynatten, Nathan R Lovejoy and Belinda Sw Chang	Visual evolution in marine derived Amazonian fishes	114	B
Morris Chukhman, Mark Maienschein-Cline, Pinal Kanabar, Cong Liu, George Chlipala, Zhengdeng Lei, Vincent Hu, Hui Lu and Neil Bahroos	Heterogeneity Analysis of Gene Fusion in Glioblastoma	115	A
Matthew Tuttle	Gene Set enrichment analysis of leptinA (lepA) in the embryonic zebrafish	116	B
Eduardo de Almeida Gutierrez and Belinda Chang	Investigating the evolution of vision in Neotropical bats through comparative transcriptomics	117	A
Alvin Farrel and Jun-Tao Guo	Structure-based prediction of homeodomain binding specificity using homology models and an integrative energy function	118	B
Tawny Cuykendall, In Sub Mark Han, Eric Minwei Liu and Ekta Khurana	Predicting the functional indispensability of non-coding elements	119	A
Jonathan Chen and Donald Visco Developing a virtual high-throughput screening pipeline for faster drug discovery: Cathepsin-L lead identification and confirmation	Developing a virtual high-throughput screening pipeline for faster drug discovery: Cathepsin-L lead identification and confirmation	120	B
Arnab Saha Mandal, Aaron Mathankeri and A.P. Jason De Koning	TAIGA: A computational framework for predicting genotype to phenotype associations	121	A
Han Lai, Minli Xu, Maureen Stolzer, Rosanna Alderson and Dannie Durand	NOTUNG 2.8: A Reconciliation Engine for Phylogenomics	122	B
Coby Viner, James Johnson, Nicolas Walker, Hui Shi, Marcela Sjoberg, David J. Adams, Anne C. Ferguson-Smith, Timothy L. Bailey and Michael M. Hoffman	Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet	123	A
Ceth Parker, John Senko, Ira Sasowsky, Hazel Barton and Augusto Auler	Cultivation of Iron Reducing Bacteria from Iron Ore Caves	124	B
Kyle Smith, Vinod Yadav, Shanshan Pei, Dan Pollyea, Craig Jordan and Subhajyoti De	SomVarIUS: Somatic variant identification from unpaired tissue samples	125	A
Matthew Mccall, Helene McMurray, Anthony Almudevar and Hartmut Land	Estimation of a Regulatory Network of Cooperation Response Genes in a Model of Cancer Malignancy	126	B
Pravin Kumar, Anurag Kumar, Devashish Das and Naveen Kulkarni	A Novel Quantitative Insilico Method to Delineate the Mechanism of Enzyme Specificity-Provide Insights for Enzyme Engineering	127	A
Joachim von Wulffen, Andreas Ulmer, Oliver Sawodny and Ronny Feuer	Gene-specific RNA elongation rates are different depending on the treatment triggering gene expression changes	128	B
Helen Piontkivska, Abdul Haseeb, Mohammad Makki An and Tariq Haqqi	miRNome profiling in human osteoarthritis: complexity of 3’ modifications	129	A
Guangyan Zhou, Tim Geary, Mary Stevenson and Jianguo Xia	Comprehensive transcriptome meta-analysis to characterize host immune responses in helminth infections	130	B
Florian Goebels, Zoran Minic, Sadhna Phanse, Gary Bader and Mohan Babu	Phosphoproteomic analysis on mitochondria isolated from differentiated human neuronal cells identifies new phosphorylation sites on proteins linked to neurodegenerative disorders	131	A
Daniel Sánchez-Taltavull	Optimal architecture of differentiation cascades with asymmetric and symmetric stem cell division	132	B
Md Shihab Hasan, Martha Zakrzewski, Don McManus and Lutz Krause	Machine learning approach for identifying parasite immunoreactive proteins: example driven by Schistosoma genomes	133	A
Rahul Agarwal and Ashutosh Singh	miCoRe: Colorectal Cancer miRNAs Database	134	B
Ehsaneddin Asgari and Mohammad R.K. Mofrad	Neural Network Word Embeddings of Biological Sequences with Applications in Deep Proteomics and Genomics	135	A
Ahmed Elbassiouny, Ryan Schott, Belinda Chang and Nathan Lovejoy	Genomic and Computational Approaches to Electrogenesis in Fishes	136	B
Houxiang Zhu, Lauren Misel, Mitchell Graham and Chun Liang	CT-Finder: A Web Service for CRISPR Optimal Target Prediction and Visualization	137	A
Pingchuan Li, Sylvie Cloutier and Frank You	RGAugury: A pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants	138	B
Sarah Dungan and Belinda Chang	Using ancestral sequence reconstruction methods to predict functional evolution in cetacean rhodopsin over a major evolutionary transition	139	A
Chad Smithson and Chris Upton	Base-By-Base v3: new tools for the comparative analysis of genomes	140	B
Sergey Aganezov and Max Alekseyev	Multi-genome Scaffold Co-Assembly Based on the Analysis of Gene Orders and Genomic Repeats	141	A
Michele D'Agnillo, Iman Rezaeian, Alioune Ngom and Luis Rueda	Machine Learning Approaches for Breast Cancer Subtypes Reveal Key Genes as Potential Biomarkers	142	B
Travers Ching and Lana Garmire	Pan-Cancer Analyses Reveal Long Intergenic Non-Coding RNAs Relevant to Tumor Diagnosis, Subtyping and Prognosis	143	A
Sijia Huang and Lana Garmire	Novel personalized pathway-based metabolomics models reveal key metabolic pathways for breast cancer diagnosis	144	B
André M. Comeau, Gavin M. Douglas and Morgan Langille	Integrated Microbiome Resource (IMR): Developing an Open and Streamlined Experimental and Analysis Pipeline for Microbiome Research	145	A
Abed Alkhateeb, Iman Rezaeian and Luis Rueda	Hierarchal Clustering based on Non-negative Matrix Factorization for Time Series transcriptomes profiles	146	B
Asmaa Elzawahry, Tsuyoshi Takahashi, Sachiyo Mimaki, Eisaku Furukawa, Rie Nakatsuka, Isao Kurosaka, Takahiko Nishigaki, Hiromi Nakamura, Satoshi Serada, Tetsuji Naka, Seiichi Hirota, Tatsuhiro Shibata, Katsuya Tsuchihara, Toshirou Nishida and Mamoru Kato	Genomics and transcriptomic analysis of imatinib resistance in gastrointestinal stromal tumor	147	A
Gyeongmo Gu, Erkhembayar Jadamba and Miyoung Shin	Computational drug repositioning through graph-based semi-supervised learning with genomic expression and drug-gene interaction network	148	B
Jinwoo Kim, Hyunjung Lee and Miyoung Shin	Inferring genes sensitive to severity of toxicity symptom	149	A
Mrinalini Pandit, Mina Maleki, Nicholas J Carruthers, Paul Stemmer and Luis Rueda	Prediction of Calmodulin-binding Proteins Using Canonical Motifs	150	B
Andrew Low and Alex Wong	CoDuMIMM: Coevolution Detection using Mutual Information and Mutational Mapping	151	A
Ian Hsu and Alan Moses	Modelling stochastic pulsatility of transcription factors in Saccharomyces cerevisiae	152	B
Hong Hu, Mark Maienschein-Cline, Zhengdeng Lei, Pinal Kanabar, George Chlipala, Morris Chukhman, Neil Bahroos and David Everly	Identification of haplotypes in HLA using genetic variant calling from amplicon NGS data	153	A
Iman Rezaeian, Eliseos Mucaki, Katherina Baranova, Huy Pham Quang, Dimo Angelov, Lucian Ilie, Alioune Ngom, Luis Rueda and Peter Rogan	Predicting patient outcomes of hormone therapy in the METABRIC breast cancer study	154	B
Caressa Tsai, Taraneh Zarin and Alan Moses	Selection on quantitative traits within intrinsically disordered protein regions preserves functional output of phosphorylation sites	155	A
Louis Philip Benoit Bouvrette, Neal Cody, Julie Bergalet, Alexis Blanchet-Cohen, Xiaofeng Wang and Eric Lecuyer	Systematic Characterization of Subcellular RNA Localization Through Fractionation-Sequencing	156	B
Christopher Cameron, Maia Kaplan, Alexandre Drouin, François Laviolette and Mathieu Blanchette	Linking Transposable Elements to Chromatin Architecture in Arabidopsis thaliana	157	A
Jose Hector Galvez Lopez, Helen H. Tai, Martin Lague, Bernie Zebarth and Martina V. Stromvik	The nitrogen responsive transcriptome in potato (Solanum tuberosum L.) reveals significant gene regulatory motifs	158	B
Jeffrey Liu, Veronique Voisin, Changjiang Xu, Ruth Isserlin and Gary Bader	A Comprehensive Map of Critical Pathways and Networks in Cancer Stem Cells	159	A
Jeffrey Wong, Gary Bader, Igor Rodchenkov, Chris Sander, Emek Demir and Ethan Cerami	Pathway Commons: Single Point of Access to Biological Pathway Information	160	B
Patryk Skowron, Livia Garzia, Sorana Morrissy and Michael Taylor	Convergent Evolution of Medulloblastoma Metastatic Tumors	161	A
Yared Kidane	In silico Discovery of Candidate Transcriptional Biomarkers for Ionizing Radiation	162	B
Eric Marinier, Rahat Zaheer, Chrystal Berry, Kelly Weedmark, Michael Domaratzki, Philip Mabon, Natalie Knox, Aleisha Reimer, Morag Graham, The Lids-Ng Consortium and Gary Van Domselaar	Neptune: Signature Discovery Software	163	A
Todd Riley, Cory Colaneri, Brandon Phan, Aadish Shah and Pritesh Patel	The Affinity Data Bank for biophysical analysis of regulatory sequences	164	B
James Morton, Stefan Freed, Md Nafiz Hamid, Shaun Lee and Iddo Friedberg	Mining for New Antimicrobials: Predicting Bacteriocin Gene Blocks	165	A
Yichao Li, Rami Al-Ouran and Lonnie Welch	Discovering regulatory elements in co-expressed genes	166	B
Bachar Cheaib, Malo Le Boulch, Pierre-Luc Mercier and Nicolas Derome	A Metagenomic perspective on the structure and function of Lake Microbial Communities exposed to toxic metal traces in short term evolution	167	A
Alexandre Drouin, Sébastien Giguère, Maxime Déraspe, Mario Marchand, Jacques Corbeil and François Laviolette	Set Covering Machines and Reference-Free Genome Comparisons Uncover Predictive Biomarkers of Antibiotic Resistance	168	B

May 16 -19, 2016 |Poster Presentations

POSTER PRESENTATIONS

ISCB On the Web