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Conference on Semantics in Healthcare and Life Sciences

Keynote Speaker - Hilmar Lapp

Updated March 03, 2014

Assistant Director for Informatics
National Evolutionary Synthesis Center (NESCent)
Durham, North Carolina, USA

Presentation Date and Time:
Friday, February 28 - 9:00 am

Presentation Title:
Semantics of and for the Diversity of Life: Opportunities and Perils of Trying to Reason on the Frontier

Click here for presentation slides

Abtsract:

The stunning diversity of life has long been a target of research, resulting in billions of specimens and hundreds of millions of pages of text in the world’s natural history museum collections and libraries. A wealth of literature documents in meticulous the detail the features shared between contemporary and extinct species, their evolutionary history and their ecological properties. Enabling the full power of computation for this constantly growing, yet woefully incomplete body of knowledge faces enormous challenges, but also offers huge opportunities. These include discovery, such as candidate gene hypothesis generation, knowledge integration, such as using the tree of life as a map, and prediction, such as forecasting the effects of environmental change on biodiversity patterns and human health. I will present examples of both obstacles and opportunities for semantics-based technologies to enable computing on our knowledge of the diversity and evolution of life on earth.

Biography:
Hilmar Lapp (@hlapp, http://orcid.org/0000-0001-9107-0714) is the Assistant Director for Informatics at the National Evolutionary Synthesis Center (NESCent). His research interests are in reusable and interoperable software and data, large-scale data integration, and in building open sustainable eScience infrastructure. A biologist by training, he has also more than two decades worth of experience developing software, databases, and other informatics resources. He is co-PI of the NSF-funded Phenoscape project (http://phenoscape.org) on ontological annotation of evolutionary phenotype observations, co-convener of the Biodiversity Information Standards (TDWG) Interest Group on Phylogenetics Standards, senior personnel in the Dryad digital data repository project (http://datadryad.org), and a participant in the Data Integration and Semantics Working Group of DataONE (http://dataone.org).

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Conference on Semantics in Healthcare and Life Sciences

Keynote Speaker - Ronald Collette, CISSP

Updated Jan 28, 2014

Chief Information Officer
Foundation Medicine
Cambridge, MA, USA

Presentation Date and Time:
Thursday, February 27 - 9:00 am

Presentation Title:

The Carpenter to the Screw: Well, I Have a Hammer. You Must Be a Nail

Abstract:
Big Data is the buzz word du jour for the media. But this phrase only scratches the surface of the problem-space that the Industry is faced with today. The issues of Fast Data extreme cardinality, disparate data formats, the demand for data mining, are but a few of the challenges that call for new approaches. A host of technologies from RDF to NLP hold tremendous promise in addressing many of these issues. During the presentation Ron will discuss the evolution, adoption, and state of computer science within Industry from the perspective of an applied engineer; and address some of the limiting factors that are hindering the adoption of Semantic Technologies.

Biography:
From Punch Cards to Big Data, Mr. Collette has spent the better part of 3 decades working in the field of technology. During that time he has worked with in industries that encompass the various sectors aerospace, engineering, construction, finance, cyber security, life sciences, commercial food, and various entities within the federal government. This variety of experience, coupled with the innate need constantly push the envelope, has garnered him a reputation of solving difficult technical issues with practical solutions that blend mature and cutting-edge technologies.

Ron Collette is a regular speaker at a number of security and IT related events such as International Standards Organization (ISO) conference, SecureWorld Expo, ISMS, and InfoSeCon. He is also a regular columnist and research analyst for Computer Economics and has co-authored two books on information security. The CISO Handbook: A Practical Guide to Securing Your Company and the companion publication CISO Soft Skills: Securing Organizations Impaired by Employee Politics, Apathy and Intolerant Perspectives.  Both of these books are utilized as course material for a number of post-graduate programs on security leadership.

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Conference on Semantics in Healthcare and Life Sciences

CONFERENCE SPONSORS

Updated Feb 12, 2014


BRONZE SPONSORS:



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GENERAL SPONSOR:



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POSTER PRIZE SPONSOR:



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COFFEE BREAK SPONSOR
:


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Conference on Semantics in Healthcare and Life Sciences

Welcome to CSHALS 2014! – February 26 - 28, 2014


ANNOUNCEMENTS:

CONGRATULATIONS TO THE FOLLOWING CSHALS AWARD WINNERS:

PAPER
AWARD:

POSTER AWARDS:

AWARD PHOTOS - click here


INTRODUCING THE CSHALS 2014 KEYNOTE SPEAKERS:

FEBRUARY 27 - THURSDAY
Ronald Collette
Chief Information Officer
Foundation Medicine
Cambridge, MA, USA

Presentation Date and Time:
Thursday, February 27 - 9:00 am

Presentation Title:
The Carpenter to the Screw: Well, I Have a Hammer. You Must Be a Nail

> Click here for presentation details <
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Deborah McGuinness, PhD
Professor, Computer and Cognitive Science
Founding Director, Rensselaer Polytechnic Institute’s Web Science Research Center
Rensselaer Polytechnic Institute (RPI)
Troy, NY, USA

Presentation Date and Time:
Thursday, February 27 - 1:00 pm

Presentation Title:
Towards Semantic Health Assistants

> Click here for presentation details <
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
FEBRUARY 28 - FRIDAY
Hilmar Lapp
Assistant Director for Informatics
National Evolutionary Synthesis Center (NESCent)
Durham, North Carolina, USA

Presentation Date and Time:
Friday, February 28 - 9:00 am

Presentation Title:
Semantics of and for the Diversity of Life: Opportunities and Perils of Trying to Reason on the Frontier

> Click here for presentation details <

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Prof. Dr. B. (Barend) Mons
Leiden University Medical Center (LUMC) and Netherlands
Bioinformatics Center (NBIC), The Netherlands

Presentation Date and Time:
Friday, February 28 - 1:00 pm

Presentation Title:
Semantics Based Biomedical Knowledge Search, Integration and Discovery
> Click here for presentation details <
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


CSHALS is the premier annual event focused on the practical application of Semantic Web and other semantic technologies to problems in the Life Sciences, including pharmaceutical industry and related areas, such as hospitals/healthcare institutions and academic research labs.

CSHALS has for 7 years been the ISCB reference conference for cutting-edge practitioners of knowledge engineering and forward-thinking strategists in information and knowledge management in the life sciences. Topics covered by CSHALS 2014 span the continuum between semantic standards development, data analytics, knowledge representation, information and knowledge management, knowledge engineering, and machine learning and reasoning.

CSHALS 2014 should be part of your plans for 2014!


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Conference on Semantics in Healthcare and Life Sciences

KEYNOTE SPEAKERS

Updated Jan 28, 2014


FEBRUARY 27 - THURSDAY
Ronald Collette
Chief Information Officer
Foundation Medicine
Cambridge, MA, USA

Presentation Date and Time:
Thursday, February 27 - 9:00 am

Presentation Title:
The Carpenter to the Screw: Well, I Have a Hammer. You Must Be a Nail

> Click here for presentation details <
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Deborah McGuiness, PhD
Professor, Computer and Cognitive Science
Founding Director, Rensselaer Polytechnic Institute’s Web Science Research Center
Rensselaer Polytechnic Institute (RPI)
Troy, NY, USA

Presentation Date and Time:
Thursday, February 27 - 1:00 pm

Presentation Title:

Towards Semantic Health Assistants

> Click here for presentation details <
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
FEBRUARY 28 - FRIDAY
Hilmar Lapp
Assistant Director for Informatics
National Evolutionary Synthesis Center (NESCent)
Durham, North Carolina, USA

Presentation Date and Time:
Friday, February 28 - 9:00 am

Presentation Title:
Semantics of and for the Diversity of Life: Opportunities and Perils of Trying to Reason on the Frontier

> Click here for presentation details <

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Prof. Dr. B. (Barend) Mons
Leiden University Medical Center (LUMC) and Netherlands Bioinformatics Center (NBIC), The Netherlands

Presentation Date and Time:
Friday, February 28 - 1:00 pm

Presentation Title:
Semantics Based Biomedical Knowledge Search, Integration and Discovery
> Click here for presentation details <
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


CSHALS is the premier annual event focused on the practical application of Semantic Web and other semantic technologies to problems in the Life Sciences, including pharmaceutical industry and related areas, such as hospitals/healthcare institutions and academic research labs.

CSHALS has for 7 years been the ISCB reference conference for cutting-edge practitioners of knowledge engineering and forward-thinking strategists in information and knowledge management in the life sciences. Topics covered by CSHALS 2014 span the continuum between semantic standards development, data analytics, knowledge representation, information and knowledge management, knowledge engineering, and machine learning and reasoning.

CSHALS 2014 should be part of your plans for 2014!

TOP

Conference on Semantics in Healthcare and Life Sciences

Keynote Speaker - Prof. Dr. B. (Barend) Mons

Updated Jan 28, 2014

Leiden University Medical Center (LUMC) and Netherlands Bioinformatics Center (NBIC), The Netherlands.

Presentation Date and Time:
Friday, February 28 -  1:00 pm

Presentation Title:
Semantics Based Biomedical Knowledge Search, Integration and Discovery

Abstract:  Barend will talk about the role of semantic technologies, (under)standards and the nanopublication ecosystem in particular. He will challenge several established views in the field of the semantic web, scholarly communication, intellectual networking, science metrics, peer review and ‘data publishing’ with an emphasis on the barriers to break down in order to allow effective data exposure, sharing and integration in the Big Data era. The context of his talk will be the need for eScience approaches to ‘in silico’ knowledge discovery.

Biography:  Barend Mons holds a chair in Biosemantics at the LUMC and is one of the scientific directors of NBIC. In addition he acts as a Life Sciences 'eScience integrator' in the Netherlands eScience centre.  Currently, he coordinates the creation of the Data Integration and Stewardship Centre (DISC-ELIXIR) and in that capacity he is also the scientific representative of The Netherlands in the interim board of the ELIXIR ESFRI project.

Barend Mons is a molecular biologist by training and received his PhD on genetic differentiation of malaria parasites from Leiden University (1986). In 2000 he focused on the development of semantic technologies to manage big data and he founded the Biosemantics group. His research is currently focused on nanopublications as a substrate for in silico knowledge discovery. Barend is also one of the founders of the Concept Web Alliance, with 'nanopublications' as its first brainchild. Nanopublications are currently implemented in the semantic project of the Innovative Medicines Initiative (IMI) called Open PHACTS.

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Conference on Semantics in Healthcare and Life Sciences

REGISTRATION


  • Credit Card - To provide payment off line please use the credit card from available here and return by email to This email address is being protected from spambots. You need JavaScript enabled to view it. or by fax to: 1+780-414-1664
>>EARLY REGISTRATION<<
Applicable Dates:
Oct 31, 2013
to
Feb 07, 2014
(5:00 p.m. Pacific)
ISCB Member Non-member
Conference
Registration
Includes Half-Day Tutorial
( Feb 26)

Conference Registration Includes Half-Day Tutorial
( Feb 26)


Industry: $575   $775  
Academic
/Government
/Non-profit:
$375   $575  
Postdoc
(with letter
from Advisor)*:
$325   $475  
Students
(with ID*):
$200   $300  
>>REGULAR REGISTRATION
Applicable Dates:
Feb 08, 2014
to
Feb 28, 2014
ISCB Member Non-member
Conference
Registration
Includes Half-Day Tutorial
( Feb 26)
Conference
Registration
Includes Half-Day Tutorial
( Feb 26)
Industry: $675   $875  
Academic
/Government
/Non-profit:
$475   $675  
Postdoc
(with letter
from Advisor)*:
$425   $575  
Students
(with ID*):
$300   $400  
 

* Advisor letter or student ID must be presented at the registration desk on-site at the conference.
* All fees are US$
* If paying by check, please make payable to International Society for Computational Biology and mail to:

CSHALS Registration
ISCB c/o Suite 437, 11215 Jasper Avenue
Edmonton, Alberta, Canada

On-site registration is available beginning February 26 at 11:00 am  at the REVERE Hotel Boston Common, Carver Foyer


Cancellation Policy:

Request for registration cancellation must be made in writing & sent to the ISCB Registration Office contact noted below.

All refunds will be mailed after the conference. Refunds will be made in accordance with the following schedule:

  • Cancellations received on or before February 1, 2014 will receive a 50% refund.
  • No refund of fees will be given after February 1, 2014

Registration Office:

Steven Leard
CSHALS Registration
c/o Suite 437, 11215 Jasper Avenue
Edmonton, Alberta, Canada

E-mail: This email address is being protected from spambots. You need JavaScript enabled to view it.

Fax +1-780-414-1664 If you have any questions please write to This email address is being protected from spambots. You need JavaScript enabled to view it..

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


 

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Conference on Semantics in Healthcare and Life Sciences

KEY DATES


KEY DATES
September 30, 2013 Call for Paper and Poster Presentations Opens
January 10, 2014 Call for Paper Presentations Closes
January 10, 2014 Call for Poster Closes
January 14, 2014 Paper Presentation Acceptance Notification
January 24, 2014 Poster Presentation Acceptance Notification
January 31, 2014 Registration Deadline: Accepted Presenters Required



 

 

 




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