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ISCB Africa ASBCB Conference on Bioinformatics 2015

HIGHLIGHTS TALKS SUBMISSIONS



ISCB-Africa ASBCB Bioinformatics Conference invites the submission of full papers that have been published, or accepted for publication, between January 1, 2013 and the submission deadline, December 8, 2014. Publications that are "in press" and already linked on the journal web site by December 8, 2014 are also welcome.

Highlight submissions may cover any area of computational biology, but preferably within one of the topic areas listed below:

  • Host/pathogen systems biology
  • Bioinformatics of human genetics
  • Molecular epidemiology and evolution
  • Functional, structural and comparative genomics
  • Database and resource development
  • Search and design of vaccines and drugs

A group of experts will select the papers to be presented at the meeting considering the impact of the work on the field, the likelihood that the work will make a good presentation, and the relevance to biomedical research, in general.

Accepted presenters for the Highlights Track are required to make the presentation themselves, and must register and pay to attend the conference.

Submissions should include a 250-word Scientific Justification (abstract-like argument) that explains how the work of the submitted paper(s) is impacting the field.

Highlights Track: Submission Guidelines

PDF files of the papers, the 250-word Scientific Justification (support abstract) and a 150-word presentation description must be submitted through the automated system by December 6, 2014 (midnight by any time zone). No exceptions will be allowed.

Submissions should include the following:

  • For each presenter only one submission to the Highlights Track will be reviewed (the LAST will be taken by default). The same limitation applies for the last author (group). Publications can be grouped if it becomes clear how different publications will be combined in a talk. The maximal number of submissions per author/co-author is 5.
  • Name/affiliation/email of submitter (assumed to be the presenter; note that the presenter cannot be changed because the identity and ability to present of that person will be an essential selection criterion).
  • Names/affiliations/email of ALL coauthors (note: any name appearing on a published paper has to be added here). Note that all co-authors have to agree to the submission. It is the responsibility of the submitter to guarantee that all co-author email addresses are correct (email notifications of the submission will be sent to all co-authors).
  • 150 word description of the presentation for promotion on conference website.
  • Additional contact information (for presenter).
  • 250-word limited abstract-like argument that explains the impact and importance of this work.
  • Sources of original publication(s) (Year, Journal, Vol., pages).
  • PDF with paper(s) (note: in case of the submission of 2 papers, both should be merged into one single PDF; all reviews will be based on the content of this PDF).
  • Optional: link to Google Video demonstrating presentation skills of presenter.
  • Only PDF submissions are acceptable. The submission system is currently unable to handle ASCII, Word, LaTeX, or anything other than standard PDF. It is the responsibility of the submitter to verify that the PDF is completely viewable/printable by all major operating systems (LINUX, MacOS, Windows).

Deadline is 8 December 2014

Notification of acceptance will be received in January 2015


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ISCB Africa ASBCB Conference on Bioinformatics 2015

ORIGINAL RESEARCH SUBMISSIONS - SUBMISSIONS ARE NOW CLOSED.  LATE-BREAKING RESEARCH POSTERS ARE AVAILABLE.





ISCB-Africa ASBCB Bioinformatics Conference welcomes original research submissions for papers and posters.

Papers and posters are intended to convey a scientific result that is original work, and are not advertisements for commercial software packages. Papers and posters may cover any area of computational biology, but preferably within one of the topic areas listed below:

  • Host/pathogen systems biology
  • Bioinformatics of human genetics
  • Molecular epidemiology and evolution
  • Functional, structural and comparative genomics
  • Database and resource development
  • Search and design of vaccines and drugs


Original Research Submission Guidelines

All abstracts must be a maximum of 250 words (to appear in the conference booklet) and should provide at the least the following information within them: background information, approach/methods, results and conclusions (actual headings within the abstract are not necessary). For paper submissions, authors are required to submit an additional paragraph of up to 250 words stating the relevance of the work for the purpose of convincing reviewers of the scientific content/validity; these additional 250 words will not be published and are for reviewing purposes only.

Original Paper Submissions for Oral Presentation Deadline is 30 November 2014.

Poster Submission Deadline is 6 December 2014.

All notifications will be received in January 2015.



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ISCB Africa ASBCB Conference on Bioinformatics 2015

SCHEDULE AT A GLANCE

Subject to adjustment as needed


Go directly to: [Tuesday - March 10] [Wednesday - March 11]

MONDAY – March 09, 2015
START TIME END TIME SESSION TYPE
08:45 am 09:00 am Opening Welcome
SESSION 1: Search and Design of Vaccine and Drugs
Chair: Ezekiel Adebiyi
09:00 am - 12:00 pm
09:00 am 10:00 am Keynote Presentation:
Michal Linial


Good Things Come in Small Packages – Replicators and Innovators
10:00 am 10:30 am Coffee Break
10:40 am 11:00 am Ruben Earl Cloete

Homology modeling of the M. tuberculosis potential drug target nicotinate-nucleotide adenylyltransferase (Rv2421c) and docking studies to identify novel inhibitors
11:00 am 11:20 am Gaston Kuzamunu Mazandu

Optimal searching for drug therapy against Ebola Virus Disease
11:20 am 11:40 am Emna S. Harigua

In silico screening and biochemical selection of small molecules targeting the Leishmania eukaryotic Initiation Factor 4A
11:40 am 12:00 pm Natasha Wood

The 3D structure and molecular dynamics of the HIV-1 g120 'glycan shield' from different subtypes
12:00 pm 02:00 pm Lunch and Poster Viewing
SESSION 2: Host/Pathogen Systems Biology
Chair: Geoffrey Attardo
02:00 pm - 04:00 pm
14:20 14:40 Oussema Souiai

Can genomic context improve phage gene annotations?
14:40 15:00 Angela Uche Makolo

Computational Identification of Signaling Pathways in Protein Interaction Networks
15:00 15:20 Itunuoluwa Marian Isewon

In-silico Discovery of Transcriptional Regulators in Plasmodium falciparum.
15:20 15:40 Marion Olubunmi Adebiyi

Computational Analysis of Anopheles gambiae Metabolism to Facilitate Insecticidal Target Discovery
15:40 16:00 Jandouwe Villinger

Discovery of a new clade of Anopheles specific flaviviruses and the first Wesselsbron virus in Kenya by novel pan-arbovirus multiplex high resolution melting analysis
04:00 pm 04:30 pm Coffee Break
04:30 pm 05:30 pm Keynote Presentation:
Matthew Berrimann

The impact of genome sequencing on the study of parasites

TUESDAY – March 10, 2015
START TIME END TIME SESSION TYPE
08:45 am 09:00 am Opening Welcome
SESSION 3: Molecular Epidemiology and Evolution
Chair: Anne Fischer
09:00 am - 12:30 pm
09:00 am 10:00 am Keynote Presentation:
Tom Gilbert

Archaeomicrobiology in the genomic era
10:00 am 10:30 am Coffee Break
10:40 am 11:00 am Yvonne Amaya

Rapid and high throughput molecular identification of diverse mosquito species by High Resolution Melting analysis

11:00 11:20 Imogen Wright

NOAH: A novel guide tree ordering and progressive alignment heuristic
11:20 11:40 am
Fredrick Nindo

Re-assortment patterns among global Influenza A, B and C viruses circulating between 1927-2013
11:40 am 12:00 pm James Otieno

Evolutionary dynamics of group A respiratory syncytial virus through long-term surveillance at the Kenyan Coast: Insights into viral persistence
12:00 pm 02:00 pm Lunch and Poster Viewing
01:00 pm 02:00 pm ISCB and ASBCB Open Business Meeting
SESSION 4: Bioinformatics of Human Genetics
Chair: Julie Makani
02:00 pm - 04:00 pm
14:00 14:20 Wojciech Makalowski

Nanopore Sequencing for Genotyping Pathogens of Tropical Diseases
14:20 14:40 Darlington Shingirirai Mapiye

Computational genomics approaches for Kidney disease in Africa
15:00 15:20 Matthew James Betts

Predicting the mechanistic impact of mutations and modifications on molecular interactions
15:20 15:40 Ben Hamda Cherif

A meta-analysis of genotype and phenotype data related to sickle cell disease to understand the biology of the disease
15:40 16:00 Howard Cash

Considerations in the Design and Management of DNA Databases for Human Identification
04:00 pm 04:30 pm Coffee Break
04:30 pm 05:30 pm Keynote Presentation:
Michèle Ramsay


African Human Genome Data: Enhancing biomedical research on the continent
05:45 PM 07:00 PM HAPPY HOUR TONIGHT!!! Drinks and Appetizers

WEDNESDAY – March 11, 2015
START TIME END TIME SESSION TYPE
08:45 am 09:00 am Opening Welcome
SESSION 5: The Glossina Genome
Chair: TBD
09:00 am - 10:00 am
09:00 am 09:20 am Geoffrey Attardo

The sequencing and annotation of the tsetse fly (Glossina morsitans) genome, a ten year international effort.
09:20 am 09:40 am George Obiero

Reduced chemosensory receptors of tsetse fly Glossina morsitans morsitans
09:40 am 10:00 am Rosaline Wanjiru Macharia

Comparative Analysis of Tsetse's Chemosensory Repertoire
10:00 am 10:30 am Coffee Break
SESSION 6: Functional and Structural Genomics
Chair: Nicola Mulder
10:30 am - 12:30 pm
11:00 11:20 am Caleb Kipkurui Kibet

Comparative analysis of transcription factor binding sites assessment approaches
11:20 am 11:40 am Kevin Premsingh Persand

Analysis of virulence genes conserved across M. tuberculosis strains
11:40 am 12:00 pm Abdoulaye Baniré Diallo

Supervised Classification of Viral Genomes based on Restriction Site Distribution
12:00 pm 02:00 pm Lunch and Poster Viewing
SESSION 7: Database and Resource Development
Chair:
Manuel Corpas
02:00 pm - 04:00 pm
 14:00  14:20
Tatyana Goldberg
 
Prediction of protein sub-cellular localization using LocTree3
14:20 14:40 Gustavo Adolfo Salazar Orejuela

A web-based protein interaction network visualizer

14:40 15:00 Shakuntala Baichoo

Infect-DB – A genome data warehouse for infectious diseases

15:00 15:20 Philip A. Oyier

Efficient Mobile Data Collection and Storage Using Open Data Kit Collection Suite for Kenyan Indigenous Poultry Databank
15:20
15:40
Lynette Hirschman

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing
04:00 pm 04:30 pm Coffee Break
04:30 pm 05:30 pm Keynote Presentation:
Roderic Guigo

Transcriptome variation across tissues and individuals
05:30 pm 05:45 pm Awards and Closing

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ISCB Africa ASBCB Conference on Bioinformatics 2015

SPONSOR AND EXHIBIT          


Download the Sponsor Prospectus

 

$5,000 Gold

 

  1. Three (3) complimentary conference registrations
  2. One (1) Exhibitor Showcase display space
  3. Company name recognition with hyperlink on sponsors page of conference website
    as Gold Sponsor
  4. Logo recognition during conference opening session
  5. Logo recognition on conference sponsor signage
  6. Gold Sponsor recognition with organization name and company URL in conference program
  7. Full-page black and white advertisement in conference program
  8. One company brochure or marketing piece inserted in conference handouts
$3,000 Silver

 

  1. Two (2) complimentary conference registrations
  2. One (1) Exhibitor Showcase display space
  3. Company name recognition with hyperlink on sponsors page of conference website
    as Silver Sponsor
  4. Logo recognition during conference opening session
  5. Logo recognition on conference sponsor signage
  6. Silver Sponsor recognition with organization name and company URL in
    conference program
  7. Half-page black and white advertisement in conference program
$2,500 Bronze

 

  1. One (1) complimentary conference registration
  2. One (1) Exhibitor Showcase display space
  3. Company name recognition with hyperlink on sponsors page of conference website
    as Bronze Sponsor
  4. Logo recognition during conference opening session
  5. Logo recognition on conference sponsor signage
  6. Bronze Sponsor recognition with organization name and company URL
    in conference program
  7. Quarter-page black and white advertisement in conference program
$2,250 Full Student Travel Fellowship

 

  1. One (1) complimentary conference registration
  2. Promotional materials in attendee meeting bags
  3. Company name recognition with hyperlink on sponsors page of conference website
  4. Logo recognition during conference opening session
  5. Logo recognition on conference sponsor signage
  6. Student Travel Fellowship Sponsor recognition with organization name and
    company URL in conference program
  7. Quarter-page black and white advertisement in conference program
$2,000 Copper

 

  1. One (1) complimentary conference registration
  2. Company name recognition with hyperlink on sponsors page of conference website
    as Copper Sponsor
  3. Logo recognition during conference opening session
  4. Logo recognition on conference sponsor signage
  5. Copper Sponsor recognition with organization name and company URL in
    conference program
$1,500 Coffee Break

 

  1. One (1) complimentary conference registration
  2. Company name recognition with hyperlink on sponsors page of conference website
  3. Logo recognition during conference opening session
  4. Logo recognition on conference sponsor signage
  5. Coffee Break Sponsor recognition with organization name and company URL
    in conference program
$1,000 Keynote Speaker

 

  1. One (1) complimentary conference registration
  2. Company name recognition with hyperlink on sponsors page of conference website
  3. Logo recognition during conference opening session
  4. Logo recognition on conference sponsor signage
  5. Keynote Speaker Sponsor recognition with organization name and company URL
    in conference program
$1,250 Exhibitor Showcase

 

  1. Exhibit showcase space, including six-foot (1.8 meter) long table
  2. Please note the showcase is designed for pop-up displays, approximately
    8 feet (2.4 meters) wide or a tabletop exhibit
  3. Company logo on the conference website identified as an Exhibitor
  4. Company name in the conference program identified as an Exhibitor
Support for Student Travel Fellowships

 

Provide support to the student travel fellowship program at any amount and be recognized
on the website as a travel fellowship sponsor.

Additional Marketing Opportunities

 

  1. Delegate bags - $7,500 USD: single sponsorship available or two organizations as joint sponsors at $3,750 USD per organization. Includes company logo on conference pack and opportunity to include one promotional brochure in the pack.

  2. Inclusion of marketing materials in delegate bags - $500 USD: Organizations can include one piece of marketing literature in delegate packs.

  3. Opening Reception - $2,250 USD: Single sponsorship or up to three organizations as joint sponsors at $750 USD per organization. Includes event signage, 5-minute welcome speech at reception and one promotional brochure in delegate pack.

  4. Conference Dinner - $5,000 USD: Single sponsorship or up to two organizations as joint sponsors at $2,500 USD per organization. Includes event signage, 5-minute welcome speech atdinner and one promotional brochure in delegate pack.
CONTACT



We are happy to customize a package that achieves your marketing goals and is aligned
with your budget.  For more information, please contact This email address is being protected from spambots. You need JavaScript enabled to view it. to confirm your presence and meet your target audience.


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ISCB Africa ASBCB Conference on Bioinformatics 2015

POST CONFERENCE TUTORIALS AND WORKSHOPS


Registration for the workshops can be completed through the conference registration site.  Registration is now open and closes 2 March 2015.
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Links within this page:

MARCH 12 - 13, 2015 - Thursday, Friday
EXPLORING VARIATION DATA & VARIATION ANNOTATION WORKSHOP
Venue: Muhimbili University of Health and Allied Sciences
Trainer:
Anja Thormann (EMBL-EBI, UK)
OVERVIEW
The aim of this workshop is to provide an overview of the different tools and resources for genomics and variation data hosted and maintained by EMBL-EBI. Participants will also gain hands on experience on variation resources as well as on variant annotation tools. More details.
--> PROGRAM
DAY 1: 1. EBI resources with focus on genomics and variation resources (ENA, EVA, EGA, ArrayExpress and Expression Atlas) (Lecture)

2. Ensemble and variation resources (Lecture & practicals)

3. Variant Effect Predictor Web tool for annotating variation data (practicals)
DAY 2: Advanced Variant annotation using VEP perl script
(Lecture & practicals)
--> AUDIENCE
DAY 1: - Knowledge of basic genetics and basic bioinformatics terminology is very helpful

- Basic computing skills
DAY 2: Attendees should have familiarity with unix and using the command line or must learn these skills prior to attending the course (www.ee.surrey.ac.uk/Teaching/Unix/).
--> FOR ADDITIONAL INFORMATION
Please contact:  This email address is being protected from spambots. You need JavaScript enabled to view it.,  This email address is being protected from spambots. You need JavaScript enabled to view it.
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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MARCH 12 - 13, 2015 - Thursday, Friday
GENOMIC DATA VISUALIZATION WORKSHOP
Venue: Muhimbili University of Health and Allied Sciences
Trainer:
Amel Ghouila (IPT, Tunisia)
OVERVIEW
Visualization is increasingly important in life science as data grows rapidly in volume and complexity. The aim of this workshop is to provide an overview and guidelines on some Bioconductor packages and other tools for visualizing diverse range of biological data.

Participants will gain hands on experience on R/Bioconductor packages as well as on Circos tool.
--> PROGRAM
DAY 1: Bioconductor Packages for Visualizing Biological Data
9:00 - 12:30 Lecture and Practicals
  1. Quick introduction to R and Bioconductor (for those who are not familiar with Bioconductor)
  2. Handling genomic features and genomic locations within the Bioconductor project (IRanges and GRanges data structures & GenomicRanges and GenomicFeatures packages)
  3. Practicals using data libraries from public sources (UCSC, ENSEMBL) including examples using Biomart
13:30- 17:30 Practicals
  1. Visualization of features from GFF, BAM files
  2. Gviz, ggbio, ggplot2, GenomeGraphs, rtracklayer packages
DAY 2:  Circos tool: A Round Form for Data Visualization
9:00- 12:30 Lecture and Practicals
  1. Circos introduction, main features and basics of creating a Circos plot
  2. Representation of a genome: chromosomes, genes
  3. Examples of representation of expression data (RNA-seq data as an example) including different displays (heat maps, histograms, scatter plots, etc.)
  4. Circos for genomes comparison
--> FOR ADDITIONAL INFORMATION
Please contact This email address is being protected from spambots. You need JavaScript enabled to view it.

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ISCB Africa ASBCB Conference on Bioinformatics 2015

 

Online Registration is now closed!

You may still register onsite starting Sunday, 8 March, at 12:30 PM

REGISTRATION         


The conference fee includes access to the conference, daily lunch and breaks, and the conference dinner. Post-conference workshops are an additional fee of $20 per day. All fees are charged in US dollar.

EARLY REGISTRATION
January 7, 2015 through February 18, 2015

ASBCB - Academic/Government/Non-Profit $280.00
ASBCB - Postdoc $250.00
ASBCB - Student $200.00
. . . . . . . . . . . . . .
ISCB - Industry $525.00
ISCB - Academic/Government/Non-Profit $430.00
ISCB - Postdoc $355.00
ISCB - Student $305.00
. . . . . . . . . . . . . .
Non-Member - Academic/Government/Non-Profit $655.00
Non-Member - Industry $740.00
Non-Member - Postdoc $585.00
Non-Member - Student $535.00
. . . . . . . . . . . . . .
LATE REGISTRATION
February 19, 2015 through March 02, 2015
ASBCB - Academic/Government/Non-Profit $355.00
ASCBC - Postdoc $320.00
ASCBC - Student $250.00
- - - - - - - - - - - -
ISCB - Industry $682.50
ISCB - Academic/Government/Non-Profit $550.00
ISCB - Postdoc $461.50
ISCB - Student $396.50
- - - - - - - - - - - -
Non-Member - Academic/Government/Non-Profit $851.50
Non-Member - Industry $960.00
Non-Member - Postdoc $755.00
Non-Member - Student $690.00

 


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ISCB Africa ASBCB Conference on Bioinformatics 2015

KEYNOTE SPEAKERS

Updated Jan 22, 2015


Matthew Berriman
Sanger Centre

 

 

 


M Thomas P Gilbert

Archaeomicrobiology in the genomic era

Natural History Museum of Denmark, University of Copenhagen



 

Roderic Guigo

Transcriptome variation across tissues and individuals 

Center for Genomic Regulation, Universitat Pompeu Fabra



 

Michal Linial

Good Things Come in Small Packages – Replicators and Innovators

Institute of Life Sciences, The Hebrew University of Jerusalem




Michèle Ramsay 

African Human Genome Data: Enhancing biomedical research on the continent

Sydney Brenner Institute for Molecular Bioscience and Division of Human Genetics,University of the Witwatersrand



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ISCB Africa ASBCB Conference on Bioinformatics 2015

GENERAL INFORMATION


To request a visa letter, please contact This email address is being protected from spambots. You need JavaScript enabled to view it..  Visa letters will only be issued to registered participants.

Please be advised that Yellow Fever is a required vaccination for some countries.  It is suggested that you obtain this vaccination before entering Tanzania.  Please also carry with you the vaccination card.


The conference will be held at

The White Sands, Resort & Conference Centre
Kunduchi, Dar es Salaam, Tanzania
Phone: +255 22 264 7620

Accommodation:
Bed and Breakfast (FREE Wi-Fi):

  • Standard Sea- Facing Rooms on Bed and Breakfast basis (Single Occupancy) US$ 150
  • Standard Sea- Facing Rooms on Bed and Breakfast basis (Double Occupancy) US$ 165

To make reservations contact (email is best):

TARRYN CLARK
 
Front Office and Reservations Manager
Phone: +255 22 264 7620-4
Mobile: +255 758 818 698 / +255 758 818 697
Fax: +255 22 264 7875
Email: This email address is being protected from spambots. You need JavaScript enabled to view it.

Reference the Group Name : ISCB-Africa ASBCB Conference
This special group rate will be available until 21 February 2015


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