MONDAY – DAY 1 – May 16, 2016 |
START TIME |
END TIME |
SESSION TYPE |
9:00 am |
6:00 pm |
Registration Location: 1st Floor Foyer |
10:30 am |
12:30 pm |
Workshop 1 Microbiome Analysis: 16S & Metagenomics Morgan Langille, Rob Beiko, & Mike Hall
Location: VC 213 |
Workshop 2 Jupyter Notebooks for Performing & Sharing Bioinformatics Analyses Jonathan Dursi
Location: VC 101 |
Workshop 3 Quick Guide to Best Practices in Software Carpentry Marcelo Ponce & Erik Spence
Location: VC 215 |
12:30 pm |
1:30 pm |
Lunch on own or Career Session in VC 115 |
1:30 pm |
3:30 pm |
Workshop 1 - continued Microbiome Analysis: 16S & Metagenomics Morgan Langille, Rob Beiko, & Mike Hall
Location: VC 213 |
Workshop 3 - continued Quick Guide to Best Practices in Software Carpentry Marcelo Ponce & Erik Spence
Location: VC 215 |
Workshop 4 Network visualization and analysis with Cytoscape Ruth Isserlin, Jeff Liu, Veronique Voisin (Bader lab)
Location: VC 101 |
3:30 pm |
4:00 pm |
Coffee break Location: 1st Floor Foyer |
4:00 pm |
5:00 pm |
Keynote 1
STEVEN JONES Genomic analysis of cancer genomes to aid in clinical decision making
Location: Frye Auditorium |
5:00 pm |
6:30 pm |
Research Session 1 Location: Frye Auditorium |
Research Session 2 Location: VC 213 |
5:00 pm |
5:30 pm |
TOPIC LEADER: Brendan Frey Precision Medicine Location: Frye Auditorium |
TOPIC LEADER: Sheelagh Carpendale Information Visualization and Visual Analysis
Location: VC 213 |
5:30 pm |
5:45 pm |
Jüri Reimand Network-driven discovery and interpretation of cancer driver mutations
Location: Frye Auditorium |
|
5:30 pm |
5:50 pm |
|
Paper: Alex Lu and Alan Moses An unsupervised kNN Method to systematically detect changes in protein localization in high-throughput microscopy images
Location: VC 213 |
5:45 pm |
6:00 pm |
Peter Rogan, Yanxin Li, Ruth Wilkins, Farrah Flegal and Joan Knoll Radiation Dose Estimation by Automated Cytogenetic Biodosimetry Location: Frye Auditorium |
|
5:50 pm |
6:05 pm |
|
Yannan Fan, Paula Ribeiro, Sarah Kimmins and Jianguo Xia miRNet - dissecting miRNA-target interactions and functional associations through network-based visual analysis
Location: VC 213 |
6:00 pm |
6:15 pm |
Shraddha Pai, Shirley Hui, Ruth Isserlin, Hussam Kaka and Gary Bader Patient similarity networks as a framework for genetic case-control prediction in autism spectrum disorders
Location: Frye Auditorium |
|
6:05 pm |
6:20 pm |
|
Achal Dhariwal and Jeff Xia Statistical, Visual and Functional Analysis of 16S rRNA Marker Gene Data
Location: VC 213 |
6:15 pm |
6:30 pm |
Eric Minwei Liu, Alexander Martinez Fundichely, Priyanka Dhingra, Andrea Sboner and Ekta Khurana Computational methods to identify cancer-driver single nucleotide variants and large rearrangements in non-coding regions Location: Frye Auditorium |
|
6:20 pm |
6:25 pm |
|
Flash Talk: Houxiang Zhu, Lauren Misel, Mitchell Graham and Chun Liang CT-Finder: A Web Service for CRISPR Optimal Target Prediction and Visualization
Location: VC 213 |
6:30 pm |
7:00 pm |
Free Time / Dinner on Own |
7:00 pm |
9:00 pm |
Welcome! Networking Reception at Duke of York Pub Location: 39 Prince Arthur Ave. |
[top] |
TUESDAY – DAY 2 – May 17, 2016 |
START TIME |
END TIME |
SESSION TYPE |
8:30 am |
6:00 pm |
Registration Location: 1st Floor Foyer |
9:00 am |
10:00 am |
Keynote 2 JENNIFER GARDY Infectious disease genomics: bioinformatics challenges
Location: Frye Auditorium |
10:00 am |
10:30 am |
Coffee break Location: 1st Floor Foyer |
10:30 am |
11:20 pm |
Research Session 3 Location: Frye Auditorium |
Research Session 4 Location: VC 213 |
10:30 am |
11:00 am |
TOPIC LEADER: Alexey Nesvizhskii Informatics of Mass Spectrometry/ Community Computing
Location: Frye Auditorium |
TOPIC LEADER: Matt Weirauch Regulatory networks
Location: VC 213 |
11:00 am |
11:20 am |
Paper: Beichuan Deng, Hengguang Li, Xiang Zhang and Seongho Kim Global Peak Alignment for Comprehensive Two-Dimensional Gas Chromatography Mass Spectrometry Using Point Matching Algorithms
Location: Frye Auditorium |
Paper: Jingting Xu, Hong Hu and Yang Dai An unlabeled-negative learning framework for human enhancer prediction based on low-methylation regions
Location: VC 213 |
11:20 am |
11:35 am |
Anne-Christin Hauschild, Jörg Ingo Baumbach and Jan Baumbach Non-invasive Precision Medicine - Statistical learning of exhaled biomarker profiles
Location: Frye Auditorium |
|
11:20 am |
11:40 am |
|
Paper: Sneha Nishtala, Yaseswini Neelamraju and Sarath Chandra Janga Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks Location: VC 213 |
11:35 am |
11:55 am |
Tech Talk: Mark Leggott, Scott Henwood Harnessing the Value of Data and Software to Accelerate Discovery
Location: Frye Auditorium |
|
11:40 am |
11:55 am |
|
Kyle Smith, Vinod Yadav and Subhajyoti De Detecting a novel signature of non-coding, regulatory alterations in cancer genomes
Location: VC 213 |
11:55 am |
12:00 pm |
|
|
11:55 am |
12:10 pm |
|
Chaitanya Rastogi, Gabriella Martini, H. Tomas Rube and Harmen Bussemaker A Versatile Framework for Learning Feature-Based Protein-DNA Recognition Models Directly from SELEX Data Location: VC 213 |
12:00 pm |
12:20 pm |
Tech Talk: Greg Newby, Compute Canada National Advanced Research Computing Platform and Services Dedicated to Canadian Researchers
Location: Frye Auditorium |
|
12:10 pm |
12:15 pm |
|
Flash Talk: Coby Viner, James Johnson, Nicolas Walker, Hui Shi, Marcela Sjoberg, David J. Adams, Anne C. Ferguson-Smith, Timothy L. Bailey and Michael M. Hoffman Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet
Location: VC 213 |
12:20 pm |
12:25 pm |
Flash Talk: Alexander Ropelewski, Ricardo Gonzalez Mendez, Jimmy Torres, Hugh Nicholas and Pallavi Ishwad Building and Sustaining Bioinformatics Community Diversity
Location: Frye Auditorium |
|
12:25 pm |
2:00 pm |
Poster Session A with lunch Location: Alumni Hall |
2:00 pm |
3:00 pm |
Keynote 3
ELIZABETH EDWARDS Metagenomics of Microbial Dechlorinating Consortia Location: Frye Auditorium |
3:00 pm |
3:30 pm |
Coffee break Location: 1st Floor Foyer |
3:30 pm |
5:00 pm |
Research Session 5 Location: Frye Auditorium |
Research Session 6 Location: VC 213 |
3:30 pm |
4:00 pm |
TOPIC LEADER: Dannie Durand Protein domains and evolution
Location: Frye Auditorium |
TOPIC LEADER: James Wasmuth Infectious disease
Location: VC 213 |
4:00 pm |
4:15 pm |
David Curran, John Gilleard and James Wasmuth Using phylogenetic instability to identify members of large gene families under adaptive evolution
Location: Frye Auditorium |
Javi Zhang, Asis Khan, Andrea Kennard, Michael E. Grigg and John Parkinson PopNet: Revealing the Impact of Recombination on Population Structure
Location: VC 213 |
4:15 pm |
4:30 pm |
Charlotte Darby, Maureen Stolzer and Dannie Durand Xenolog Classification: Steps toward a Xenolog Conjecture
Location: Frye Auditorium |
Gaston Mazandu, Kayleigh Rutherford, Elsa-Gayle Zekeng, Emile Chimusa and Nicola Mulder Modeling drug repositioning by leveraging drug-target-disease association datasets: A case study of Ebola virus disease Location: VC 213 |
4:30 pm |
4:45 pm |
Shobhit Jain and Gary Bader Predicting physiologically relevant SH3 domain mediated protein-protein interactions in human
Location: Frye Auditorium |
Alexandre Drouin, Sébastien Giguère, Maxime Déraspe, Mario Marchand, Jacques Corbeil and Franois Laviolette Set Covering Machines and Reference-Free Genome Comparisons Uncover Predictive Biomarkers of Antibiotic Resistance
Location: VC 213 |
4:45 pm |
4:50 pm |
Flash Talk: James Morton, Stefan Freed, Md Nafiz Hamid, Shaun Lee and Iddo Friedberg Mining for new antimicrobial agents: predicting bacteriocin gene blocks
Location: Frye Auditorium |
Flash Talk: Pingchuan Li, Sylvie Cloutier and Frank You RGAugury: A pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants
Location: VC 213 |
4:50 pm |
4:55 pm |
Flash Talk: Yanbin Yin and Alex Ekstrom ORFanFinder: automated identification of taxonomically restricted orphan genes
Location: Frye Auditorium |
Flash Talk: Rajeev Azad, Mehul Jani and Kalai Mathee Identification of novel genomic islands in Liverpool epidemic strain of Pseudomonas aeruginosa using segmentation and clustering
Location: VC 213 |
4:55 pm |
5:30 pm |
Free Time / Dinner on Own |
5:30 pm |
7:00 pm |
Discussion Forum for Canadian Investigators
Location: Room 115 |
5:30 pm |
9:30 pm |
Workshop 5 Hands-on workshop on Machine Learning with Applications to Bioinformatics Ivan Kryukov & Jeff Wintersinger
Location: VC 215 |
5:30 pm |
7:00 pm |
Workshop 6 Exploring and Refining Core Competencies for Bioinformatics (ISCB Curriculum Task Force) Lonnie Welch, Michelle Brazas, & Russell Schwart
Location: VC 213 |
[top] |
WEDNESDAY – DAY 3 – May 18, 2016 |
START TIME |
END TIME |
SESSION TYPE |
8:30 am |
6:00 pm |
Registration Location: 1st Floor Foyer |
9:00 am |
10:00 am |
Keynote 4
MATHIEU BLANCHETTE Know thy ancestors to know thyself: Improving our understanding of the human genome using paleogenomics
Location: Frye Auditorium |
10:00 am |
10:30 am |
Coffee break Location: 1st Floor Foyer |
10:30 am |
12:20 pm |
Research Session 7 Location: Frye Auditorium |
Research Session 8 Location: VC 213 |
10:30 am |
11:00 am |
TOPIC LEADER: Guillaume Bourque Genome analysis
Location: Frye Auditorium |
TOPIC LEADER: Amy Caudy Metabolomics and Chemoinformatics
Location: VC 213 |
11:00 am |
11:20 am |
Paper: Zachary Stephens, Matthew Hudson, Liudmila Mainzer, Morgan Taschuk, Matthew Weber and Ravishankar Iyer Simulating Next-Generation Sequencing Datasets From Empirical Mutation and Sequencing Models
Location: Frye Auditorium |
Paper: Miroslava Cuperlovic-Culf, Nandhakishore Rajagopalan, Dan Tulpan and Michele Loewen Metabolomics and Cheminformatics analysis guiding the Discovery of Antifungal Metabolites for Crop Protection
Location: VC 213 |
11:20 am |
11:40 am |
Paper: Daniel Sanchez-Taltavull, Parameswaran Ramachandran, Nelson Lau and Theodore Perkins Bayesian Correlation Analysis for Sequence Count Data
Location: Frye Auditorium |
|
11:20 am |
11:35 am |
|
Yin Lu, Yi-Cheng Tu and Feng Cheng A novel algorithm for analyzing drug-drug interactions from MEDLINE literature
Location: VC 213 |
11:35 am |
11:50 am |
|
Zhaleh Safikhani, Benjamin Haibe-Kains, Kelsie Thu, Petr Smirinov, David Cescon and Mathieu Lupien Meta-analysis of large pharmacogenomics studies to develop isoform-based biomarkers predictive of response to targeted therapies
Location: VC 213 |
11:40 am |
11:55 am |
Greg Gloor, Jean Megan Macklaim and Jia Wu CoDaSeq: compositional data analysis for high throughput sequencing data
Location: Frye Auditorium |
|
11:50 am |
12:05 pm |
|
Seyed Ali Madani Tonekaboni, Zhaleh Safikhani and Benjamin Haibe-Kains In-silico pipeline for tissue-specific drug combination discovery
Location: VC 213 |
11:55 am |
12:10 pm |
Davide Chicco and Michael M. Hoffman Distal chromatin loop prediction with deep siamese neural networks
Location: Frye Auditorium |
|
12:05 pm |
12:15 pm |
|
Jiun Yen, Glenda Gillaspy and Ryan Senger A genome-scale algorithmic approach for metabolic engineering of plants |
12:10 pm |
12:15 pm |
Flash Talk: Musaddeque Ahmed, Haiyang Guo and He Housheng Integrative analysis for identification and functional prediction of long non-coding RNAs in cancer Location: Frye Auditorium |
|
12:15 pm |
12:20 pm |
Flash Talk: Armin Rouhi, Janneke Wit and James Wasmuth Investigating the usefulness of long-read sequencing technologies on the study of large eukaryotic gene families
Location: Frye Auditorium |
|
12:30 pm |
2:00 pm |
Poster Session B with lunch Location: Alumni Hall |
2:00 pm |
3:00 pm |
Keynote 5
CHRISTINA LESLIE Decoding gene regulatory programs in cellular differentiation
Location: Frye Auditorium |
3:00 pm |
3:30 pm |
Coffee break Location: 1st Floor Foyer |
3:30 pm |
5:30 pm |
Workshop 7 Next generation sequencing Adam Rosebrock
>>Sign up here<<
Location: 115 |
3:30 pm |
5:30 pm |
Research Session 9 Location: Frye Auditorium |
Research Session 10 Location: VC 213 |
3:30 pm |
4:00 pm |
TOPIC LEADER: Sushmita Roy Biological networks
Location: Frye Auditorium |
TOPIC LEADER: Rob Beiko Metagenomics
Location: VC 213 |
4:00 pm |
4:20 pm |
Paper: Matthew O'Meara, Sara Ballouz, Brian Shoichet and Jesse Gillis Ligand similarity complements sequence, physical interaction, and co-expression for gene function prediction
Location: Frye Auditorium |
Paper: Ruth G. Wong, Jia R. Wu and Gregory B. Gloor Expanding the UniFrac toolbox
Location: VC 213
|
4:20 pm |
4:35 pm |
Bundalovic-Torma and John Parkinson Biological Interaction Networks in Bacteria - Generation and Evolutionary Insights
Location: Frye Auditorium |
|
4:20 pm |
4:40 pm |
|
Paper: Ahmed Metwally, Yang Dai, Patricia Finn and David Perkins WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences
Location: VC 213 |
4:35 pm |
4:50 pm |
Li Zhu, Ying Ding, Cho-Yi Chen, Zhiguang Huo, Sunghwan Kim, Steffi Oesterreich and George Tseng MetaDCN: meta-analysis framework for differential coexpression network detection with an application in breast cancer
Location: Frye Auditorium |
|
4:40 pm |
4:55 pm |
|
Frederic Raymond, Maxime Déraspe, Sébastien Boisvert, Alexander Culley, Paul H. Roy, François Laviolette and Jacques Corbeil Ray Surveyor: phenetic comparison of genomes and its application in microbial evolution
Location: VC 213 |
4:50 pm |
5:05 pm |
Lu Cheng and Mu Zhu Compositional Epistasis Detection Using A Few Prototype Disease Models
Location: Frye Auditorium |
|
4:55 pm |
5:10 pm |
|
Jean Megan Macklaim, Amy McMillan, Mark Sumarah, Jonathan Swann, Gregor Reid and Greg Gloor Insights into the metatranscriptome and metabolome of the vaginal microbiome
Location: VC 213 |
5:05 pm |
5:20 pm |
Robin Haw Reactome Revolutions - Pathways and Networks
Location: Frye Auditorium |
|
5:10 pm |
5:25 pm |
|
Michael Hall, Jonathan Perrie and Robert Beiko Time-series clustering enables the exploration of temporal patterns in marker gene data
Location: VC 213 |
5:20 pm |
5:25 pm |
Flash Talk: Bahram Samanfar, Andrew Schoenrock, Frank Dehne, Ashkan Golshani, Elroy Cober, Martin Charette and Steve Molnar PIPE (Protein-protein Interaction Prediction Engine): A computational approach for comprehensive soybean functional genomics
Location: Frye Auditorium |
|
5:30 pm |
6:00 pm |
Free Time |
6:00 pm |
9:00 pm |
Banquet with Keynote 6 ALED EDWARDS
Open science: From computational biology to the real world
Location: Burwash Hall |
[top] |
THURSDAY – DAY 4 – May 19, 2016 |
START TIME |
END TIME |
SESSION TYPE |
8:30 am |
3:00 pm |
Registration Location: 1st Floor Foyer |
9:00 am |
10:00 am |
Keynote 7 JANE CARLTON Harnessing genomics to study the global public health burden of malaria
Location: Frye Auditorium |
10:00 am |
10:30 am |
Coffee break Location: 1st Floor Foyer |
10:30 pm |
12:00 pm |
Workshop 8 Computational approaches to synthetic biology Cathy Su, Esther Jang, Alexander Sullivan (iGEM Toronto)
>>Sign up here<<
Location: VC 115 |
10:30 am |
12:00 pm |
Research Session 11 Location: Frye Auditorium |
Research Session 12 Location: VC 213 |
10:30 am |
11:00 am |
TOPIC LEADER: Carlos Camacho Structural biology
Location: Frye Auditorium |
TOPIC LEADER: Igor Jurisica Integrative data analysis Location: VC 213 |
11:00 am |
11:20 am |
Flash Talk: Eric Stahlberg, Carl McCabe and George Zaki High-Performance and Exascale Computing Frontiers in Cancer Applications Location: Frye Auditorium |
Cancelled Paper: Sumaiya Iqbal and Md Tamjidul Hoque Estimation of Free Energy Contribution of Protein Residues as Feature for Structure Prediction from Sequence
Location: Frye Auditorium |
11:00 am |
11:15 am |
|
Fazle Faisal, Yuriy Hulovatyy, Huili Chen and Tijana Milenkovic Dynamic and integrative biological network research of aging
Location: VC 213 |
11:15 am |
11:30 am |
|
Hamed Najafabadi, Pouria Jandaghi, Shraddha Solanki, Andreas Papadakis, Maryam Safisamghabadi, Cristina Storoz, Mark Lathrop, Sidong Huang, Simon Tanguay, Fadi Brimo and Yasser Riazalhosseini A regulatory model for discovering aberrant post-transcriptional programs in cancer
Location: VC 213 |
11:20 am |
11:35 am |
Devashish Das, Pravin Kumar, Naveen Kulkarni and Anurag Kumar A novel atomistic motional correlation method combined with thermodynamics to delineate the intricate mechanism of substrate specific catalysis: enzyme engineering perspective
Location: Frye Auditorium |
|
11:30 am |
11:45 am |
|
Heather Wheeler, Kaanan Shah, Jonathon Brenner and Hae Kyung Im Survey of the Heritability and Sparsity of Gene Expression Traits Across Human Tissues
Location: VC 213 |
11:35 am |
11:50 am |
Frazier Baker and Alexey Porollo Prediction of Metal Binding Sites in Proteins Using Coevolution Data Location: Frye Auditorium |
|
11:45 am |
12:00 pm |
|
Christian Wiwie, Jan Baumbach and Richard Röttger On the clustering of biomedical datasets - a data-driven perspective
Location: VC 213 |
11:50 am |
11:55 am |
Flash Talk: Nehme El-Hachem, Deena Gendoo, Benjamin Haibe-Kains Decoding compound mechanism of action using integrative pharmacogenomics
Location: Frye Auditorium |
|
12:00 pm |
1:00 pm |
Lunch on own |
1:00 pm |
2:00 pm |
Research Session 13 Location: Frye Auditorium |
Research Session 14 Location: VC 213 |
1:00 pm |
1:30 pm |
TOPIC LEADER: Mads Kaern Dynamic systems modeling
Location: Frye Auditorium |
TOPIC LEADER: Belinda Chang Phylogenetics
Location: VC 213 |
1:30 pm |
1:50 pm |
Paper: Joachim von Wulffen, Oliver Sawodny and Ronny Feuer Balancing mRNA and Protein Levels in a Demand-Directed Dynamic Flux Balance Analysis Describes Effects of the Transition of an Anaerobic Escherichia coli Culture to Aerobic Conditions Location: Frye Auditorium |
|
1:30 pm |
1:45 pm |
|
Ivan Kryukov, Bianca de Sanctis and A.P. Jason de Koning Efficient techniques for direct analysis of discrete-time population genetic models
Location: VC 213 |
1:45 pm |
2:00 pm |
|
Maureen Stolzer and Dannie Durand How plastic are multidomain proteins? Quantifying domain co-evolution in primate genomes
Location: VC 213 |
2:00 pm |
3:00 pm |
Keynote 8 TIMOTHY HUGHES
Decoding Gene Regulation
Location: Frye Auditorium |
3:00 pm |
3:15 pm |
Closing Ceremonies Location: Frye Auditorium |
[top] |