Leading Professional Society for Computational Biology and Bioinformatics
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UPCOMING DEADLINES & NOTICES

  • Last day for presenting and poster authors to complete registration *no extensions*
    GLBIO 2024
    April 22, 2024
  • Late poster submissions open (posters only)
    ISMB 2024
    April 22, 2024
  • Talks and posters submissions deadline
    ECCB 2024
    April 23, 2024
  • Registration deadline for organisers and speakers
    ECCB 2024
    April 30, 2024
  • Last day to upload ANY/ALL files to the virtual Platform
    GLBIO 2024
    May 06, 2024
  • Acceptance notification for talks and posters
    ECCB 2024
    May 08, 2024
  • Tech track proposal deadline (closes earlier if capacity is reached)
    ISMB 2024
    May 10, 2024
  • Early bird registration opens
    APBJC 2024
    May 10, 2024
  • Talk and/or poster acceptance notifications
    ISMB 2024
    May 13, 2024
  • Conference fellowship invitations sent for early abstract accepted talks and posters
    ISMB 2024
    May 13, 2024
  • (Conditional) Acceptance notification for proceedings
    ECCB 2024
    May 15, 2024
  • Registration deadline for talk presenting authors
    ECCB 2024
    May 15, 2024
  • CAMDA extended abstracts deadline
    ISMB 2024
    May 20, 2024
  • Late poster submissions deadline
    ISMB 2024
    May 20, 2024
  • Conference fellowship application deadline
    ISMB 2024
    May 20, 2024
  • Revised paper deadline
    ECCB 2024
    May 25, 2024
  • Tech track acceptance notification
    ISMB 2024
    May 31, 2024
  • Last day for discounted student hotel booking
    ISMB 2024
    May 27, 2024
  • Late poster acceptance notifications
    ISMB 2024
    May 28, 2024
  • CAMDA acceptance notification
    ISMB 2024
    May 30, 2024
  • Complete workshop/tutorial programme with speakers and schedule online
    ECCB 2024
    May 30, 2024
  • Conference fellowship acceptance notification
    ISMB 2024
    May 31, 2024
  • Tech track presentation schedule posted
    ISMB 2024
    May 31, 2024
  • Final acceptance notification for proceedings
    ECCB 2024
    May 31, 2024

Upcoming Conferences

A Global Community

  • ISCB Student Council

    dedicated to facilitating development for students and young researchers

  • Affiliated Groups

    The ISCB Affiliates program is designed to forge links between ISCB and regional non-profit membership groups, centers, institutes and networks that involve researchers from various institutions and/or organizations within a defined geographic region involved in the advancement of bioinformatics. Such groups have regular meetings either in person or online, and an organizing body in the form of a board of directors or steering committee. If you are interested in affiliating your regional membership group, center, institute or network with ISCB, please review these guidelines (.pdf) and send your exploratory questions to Diane E. Kovats, ISCB Chief Executive Officer (This email address is being protected from spambots. You need JavaScript enabled to view it.).  For information about the Affilliates Committee click here.

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Professional Development, Training, and Education

ISCBintel and Achievements

ABOUT THE CANADIAN COMPUTATIONAL BIOLOGY CONFERENCE (CCBC)


Canadian Bioinformatics and Computational BiologyOver the past 18 months, the Bioinformatics/Computational Biology (B/CB) Advisory Committee has worked closely with research funders to develop a strategic framework with a view to building a fully integrated Canadian B/CB capacity across the life sciences. One of the key items that has already emerged from this consultative process was the interest and strong willingness to organize a regularly scheduled Canadian Computational Conference. Given the fortuitous planning of the ISMB-sponsored regional GLBIO2016 conference in Toronto, select members of the B/CB advisory group were delighted to be invited to co-organize the first Canadian Computational Biology Conference with the Great Lakes Bioinformatics (GLBIO) conference for 2016.

This first Canadian Computational Biology conference will offer Canadians the opportunity to bring stakeholders together to explore the possibility of an action plan for the formation of a national network, including how it needs to be structured and funded to ensure its sustainability. By establishing a Canadian B/CB conference the research community and stakeholders have the opportunity to build an integrated community that is linked to International initiatives. We look forward to the meeting serving as a platform upon which like-minded individuals will inform others on the potential benefits that such a meeting would bring to the B/CB community in Canada.

In addition to gathering the National and US/Canadian great lakes community in this inaugural Canadian Computational Biology conference, we have the opportunity to put together an exciting scientific program and venue that will benefit students, scientists and managers at all level of people through the proceedings at this conference. As the first launch of the Canadian conference, the organizers are grateful for the considerable organizational support and experience of the International Society of Computational Biology and the local chapter of the Great Lakes Bioinformatics conference, who have done much to assist the Canadian meeting.

Since the beginning of this initiative, both Genome Canada and the Canadian Institutes of Health Research (through the Institute of Genetics and its B/CB sub-committee) have been steadfast in their support of this community. While it is clear that there remains much work to be done, both organizations have participated in a vision that brings the Canadian community together. Without their sponsorships, support and assistance the Canadian conference would not have been possible.

Keeping up with the needs of the life sciences community for innovative and increasingly complex algorithms, tools and databases is surpassing existing researcher capacity. There is a pressing need to coordinate and integrate what is currently being done in Canada to be able to meet the demands of the user community. The establishment of this national conference is the first step in coordinating our efforts within the B/CB community, in collaboration with research funders, infrastructure providers, users and other stakeholders. Finally, this first conference will provide the Canadian community with a pivotal forum for discussions as to how best to bring all stakeholders together in support of a sustainable national network.

More details on the Canadian Bioinformatics and Computational Biology community will always be available from the bioinformatics.ca website.

Canadian Bioinformatics and Computational Biology


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ACCOMMODATIONS


CHELSEA HOTEL
The headquarters hotel for GLBIO/CCBC 2016, the Chelsea Hotel is Canada's largest hotel with 1,590 guest rooms, is centrally located and just steps from the city's best shopping districts, world-class theatres, vibrant nightlife and exciting attractions. This full-service urban resort offers four restaurants and lounges, separate adult and family recreation areas and pools - including the "corkscrew" - downtown Toronto's only indoor waterslide. Complimentary in room WiFi and use of the fitness Centre are included with your stay.
The room block is now closed.  If you are interested in booking a room at our conference rate, please email Bel Hanson at This email address is being protected from spambots. You need JavaScript enabled to view it. and we will attempt to accommodate your request.


B
URWASH B&B
These University of Toronto Dormitories are located just steps away from the GLBIO/CCBC 2016 venue. These basic rooms can be booked as a single or double, have a shared bathroom and include breakfast. Complimentary WiFi is available in the common areas and internet in your room but you must bring your own Ethernet cable.

 


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GETTING HERE


Toronto Airport, Canada
Long Wave, Allen Lambert Galleria, Brookfield Place, Toronto
Photo courtesy of Toronto Tourism & Visitors Association
AIRPORT 411

Toronto Pearson International Airport (code YYZ) is the main point of landing for most domestic and international flights. Toronto Pearson is 27 km (17 miles) west of downtown (about a half-hour drive). To get from the airport to downtown, you can:

1. Take the UP (Union Pearson) Express, a brand-new dedicated express rail service connecting Union station to Toronto Pearson, departing every 15 minutes. Fares cost up to $27.50 depending on destination and type of pass, go to UPExpress.com to find out more.

2. Hire a taxi or an airport limo: Look for the lineup signs for taxis. The average cost into the city is about $50.

3. Catch a shuttle bus: Many hotels offer airport shuttles, so check whether yours does.

4. Rent a car: You’ll find major car-rental outfits at both Terminal 1 and Terminal. Most are open daily from 6 a.m. to 1 a.m.

  • Alamo, 1-800-GO-ALAMO
  • Avis, 1-800-TRY-AVIS Budget, 1-800-268-8900
  • Dollar, 1-800-800-4000 Enterprise, 1-800-261-7331
  • Hertz, 1-800-263-0600 National, 1-800-CAR-RENT
  • Thrifty, 1-800-THRIFTY


5. Take public transit: You’ll save money if you take the Toronto Transit Commission (TTC). Catch the 192 Airport Rocket bus to Kipling subway station, or take the 52A Lawrence West bus to Lawrence West subway station. Both stations are on subway lines servicing the downtown core. Visit ttc.ca.

  • Billy Bishop Toronto City Airport (code YTZ), located on the Toronto Islands, services domestic, chartered and select U.S. flights. Billy Bishop is a short ferry ride from Toronto’s Harbourfront district, then mere minutes from downtown’s taxis and public transit. A tunnel is being built and will make the connection even faster (anticipated completion is early 2015).

TRAVELLING BY BUS

Toronto Coach Terminal is the main intercity bus depot, located downtown at 610 Bay St. GO Transit buses service inter-region travel in and around the Greater Toronto Area. The GO Transit bus hub is located at 140 Bay St. (at Front Street, just east of Union Station). Call 416-869-3200 for more information or visit gotransit.com.

TRAVELLING BY TRAIN

All trains arrive and depart from Union Station (65 Front St. W.). VIA Rail handles most of Canada’s intercity routes and connects to the U.S. via Amtrak. The Amtrak/VIA Maple Leaf route runs between New York City and Toronto daily and takes around 12 hours, depending on the border wait. For more information: 1-888-VIA-RAIL and viarail.ca; 1-800-USA-RAIL and amtrak.com. GO Transit trains service inter-region travel in and around the Greater Toronto Area. The green-and-white trains operate from Union Station. Call 416-869-3200 for more information or visit gotransit.com. For general station information, call the Travellers’ Aid Society of Toronto at 416-366-7788.


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PROMOTION


Click here to download PDF of the promotional flyer.
The GLBIO/CCBC Great Lakes Bioinformatics and the Canadian Computational Biology Conference 2016, May 16 - 19, 2016

.....................................................................................................

Image Credits:

Moshe Dessau



Bar-Ilan University, Israel
An assembly model of Rift valley fever virus (RVFV)
The crystal structure of RVFV Gc, one of the virus' two envelope glycoproteins, fitted into a cryo-EM 3D reconstruction. (Dessau & Modis, PNAS 2013)

Part of the ISMB ECCB 2015 Art and Science Exhibit
www.iscb.org/cms_addon/conferences/ismbeccb2015/artscience.php

.............................................

Toronto skyline a night
Tourism Toronto, http://tourismtorontoimagegallery.com/

 


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THANK YOU FOR MAKING GLBIO/CCBC 2016 AN OVERWHELMING SUCCESS!

The GLBIO/CCBC Great Lakes Bioinformatics and the Canadian Computational Biology Conference 2016

University of Toronto, Canada
Victoria College
University of Toronto
91 Charles St W
Toronto, ON M5S 1K5, Canada

The conference is organized by the Great Lakes Bioinformatics Consortium to provide an interdisciplinary forum for the discussion of research findings and methods. An important goal for the conference is to foster long term collaborative relationships and networking opportunities within the domain of computational approaches to biology. The program will include oral presentations, poster presentations, invited keynote speakers and tutorials.

GLBIO/CCBC SPONSORS

CONFERENCE CO-ORGANIZER:

Canadian Institutes of Health Research, Institute of Genetics  

Canadian Institutes of Health Research, Institute of Genetics

www.cihr-irsc.gc.ca/

...............................................................

PLATINUM:

Genome Canada

www.genomecanada.ca/en/

...............................................................

GOLD:

Genome Canada

www.ontariogenomics.ca/

. . . . . . . . . . . . . . . . . . . . . . . .

SGI

www.sgi.com/

...............................................................

BRONZE:

CANARIE

www.canarie.ca

...............................................................

COPPER:



http://bioinformatics.ca

. . . . . . . . . . . . . . . . . . . . . . . .

Compute Canada

www.computecanada.ca

...............................................................

EXHIBITOR SPONSOR:

University of Toronto, Centre for the Analysis of Genome Evolution & Function

www.cagef.utoronto.ca

...............................................................

Cincinnati Children’s - Change the Outcome

www.cincinnatichildrens.org/

...............................................................

GENERAL:

University of Michigan Medical School - Bioinformatics Core

https://medicine.umich.edu/medschool/research/office-research/biomedical-research-core-facilities/bioinformatics

...............................................................

BEST PAPER SPONSOR:

CANARIE

www.springer.com/us/

...............................................................

BEST POSTERS SPONSOR:

F1000

http://f1000.com/prime/about/whatis/posters/


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CONTACT US



GLBIO/CCBC General Questions

Bel Hanson
Conference Manager
This email address is being protected from spambots. You need JavaScript enabled to view it.
Tel: 1-315-767-5568

 

 


 

FULL AGENDA


Conference is being held at Victoria, College, University of Toronto.

Go directly to: [Tuesday - May 17] [Wednesday - May 18] [Thursday - May 19]

*As of May 16, 2016. Subject to change without notice.

MONDAY – DAY 1 – May 16, 2016
START TIME END TIME SESSION TYPE
9:00 am 6:00 pm Registration
Location: 1st Floor Foyer
10:30 am 12:30 pm Workshop 1
Microbiome Analysis: 16S & Metagenomics

Morgan Langille, Rob Beiko, & Mike Hall

Location: VC 213
Workshop 2
Jupyter Notebooks for Performing & Sharing Bioinformatics Analyses

Jonathan Dursi

Location: VC 101
Workshop 3
Quick Guide to Best Practices in Software Carpentry


Marcelo Ponce & Erik Spence

Location: VC 215
12:30 pm 1:30 pm Lunch on own
or Career Session in VC 115
1:30 pm 3:30 pm Workshop 1 - continued
Microbiome Analysis: 16S & Metagenomics

Morgan Langille, Rob Beiko, & Mike Hall

Location: VC 213
Workshop 3 - continued
Quick Guide to Best Practices in Software Carpentry


Marcelo Ponce & Erik Spence

Location: VC 215
Workshop 4
Network visualization and analysis with Cytoscape


Ruth Isserlin, Jeff Liu, Veronique Voisin (Bader lab)

Location: VC 101
3:30 pm 4:00 pm Coffee break
Location: 1st Floor Foyer
4:00 pm 5:00 pm Keynote 1

STEVEN JONES
Genomic analysis of cancer genomes to aid in clinical decision making

Location: Frye Auditorium
5:00 pm 6:30 pm Research Session 1

Location:
Frye Auditorium
Research Session 2

Location: VC 213
5:00 pm 5:30 pm TOPIC LEADER:
Brendan Frey
Precision Medicine

Location:
Frye Auditorium
TOPIC LEADER:
Sheelagh Carpendale
Information Visualization and Visual Analysis


Location: VC 213
5:30 pm 5:45 pm Jüri Reimand
Network-driven discovery and interpretation of cancer driver mutations

Location:
Frye Auditorium
 
5:30 pm 5:50 pm   Paper:
Alex Lu and
Alan Moses

An unsupervised kNN Method to systematically detect changes in protein localization in high-throughput microscopy images

Location: VC 213
5:45 pm 6:00 pm Peter Rogan, Yanxin Li, Ruth Wilkins, Farrah Flegal and Joan Knoll
Radiation Dose Estimation by Automated Cytogenetic Biodosimetry

Location:
Frye Auditorium
 
5:50 pm 6:05 pm   Yannan Fan, Paula Ribeiro, Sarah Kimmins and Jianguo Xia
miRNet - dissecting miRNA-target interactions and functional associations through network-based visual analysis

Location: VC 213
6:00 pm 6:15 pm Shraddha Pai, Shirley Hui, Ruth Isserlin, Hussam Kaka and Gary Bader
Patient similarity networks as a framework for genetic case-control prediction in autism spectrum disorders

Location:
Frye Auditorium
 
6:05 pm 6:20 pm   Achal Dhariwal and Jeff Xia
Statistical, Visual and Functional Analysis of 16S rRNA Marker Gene Data

Location: VC 213
6:15 pm 6:30 pm Eric Minwei Liu, Alexander Martinez Fundichely, Priyanka Dhingra, Andrea Sboner and Ekta Khurana
Computational methods to identify cancer-driver single nucleotide variants and large rearrangements in non-coding regions

Location:
Frye Auditorium
 
6:20 pm 6:25 pm   Flash Talk:
Houxiang Zhu, Lauren Misel, Mitchell Graham and Chun Liang

CT-Finder: A Web Service for CRISPR Optimal Target Prediction and Visualization

Location: VC 213
6:30 pm 7:00 pm Free Time / Dinner on Own
7:00 pm 9:00 pm Welcome! Networking Reception
at Duke of York Pub

Location: 39 Prince Arthur Ave.
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TUESDAY – DAY 2 – May 17, 2016
START TIME END TIME SESSION TYPE
8:30 am 6:00 pm Registration
Location: 1st Floor Foyer
9:00 am 10:00 am Keynote 2

JENNIFER GARDY
Infectious disease genomics: bioinformatics challenges

Location: Frye Auditorium
10:00 am 10:30 am Coffee break
Location: 1st Floor Foyer
10:30 am 11:20 pm Research Session 3

Location:
Frye Auditorium
Research Session 4

Location: VC 213
10:30 am 11:00 am TOPIC LEADER:
Alexey Nesvizhskii

Informatics of Mass Spectrometry/ Community Computing


Location:
Frye Auditorium
TOPIC LEADER:
Matt Weirauch

Regulatory networks


Location: VC 213
11:00 am 11:20 am Paper:
Beichuan Deng, Hengguang Li, Xiang Zhang and Seongho Kim

Global Peak Alignment for Comprehensive Two-Dimensional Gas Chromatography Mass Spectrometry Using Point Matching Algorithms

Location:
Frye Auditorium
Paper:
Jingting Xu, Hong Hu and Yang Dai

An unlabeled-negative learning framework for human enhancer prediction based on low-methylation regions

Location: VC 213
11:20 am 11:35 am Anne-Christin Hauschild, Jörg Ingo Baumbach and Jan Baumbach
Non-invasive Precision Medicine - Statistical learning of exhaled biomarker profiles

Location:
Frye Auditorium
 
11:20 am 11:40 am   Paper:
Sneha Nishtala, Yaseswini Neelamraju and Sarath Chandra Janga

Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks

Location: VC 213
11:35 am 11:55 am Tech Talk:
Mark Leggott, Scott Henwood

Harnessing the Value of Data and Software to Accelerate Discovery

Location:
Frye Auditorium
 
11:40 am 11:55 am   Kyle Smith, Vinod Yadav and Subhajyoti De
Detecting a novel signature of non-coding, regulatory alterations in cancer genomes

Location: VC 213
11:55 am 12:00 pm    
11:55 am 12:10 pm   Chaitanya Rastogi, Gabriella Martini, H. Tomas Rube and Harmen Bussemaker
A Versatile Framework for Learning Feature-Based Protein-DNA Recognition Models Directly from SELEX Data

Location: VC 213
12:00 pm 12:20 pm Tech Talk:
Greg Newby,
Compute Canada
National Advanced Research Computing Platform and Services Dedicated to Canadian Researchers

Location:
Frye Auditorium
 
12:10 pm 12:15 pm   Flash Talk:
Coby Viner, James Johnson, Nicolas Walker, Hui Shi, Marcela Sjoberg, David J. Adams, Anne C. Ferguson-Smith, Timothy L. Bailey and Michael M. Hoffman

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

Location: VC 213
12:20 pm 12:25 pm Flash Talk:
Alexander Ropelewski, Ricardo Gonzalez Mendez, Jimmy Torres, Hugh Nicholas and Pallavi Ishwad

Building and Sustaining Bioinformatics Community Diversity

Location:
Frye Auditorium
 
12:25 pm 2:00 pm Poster Session A with lunch
Location: Alumni Hall
2:00 pm 3:00 pm Keynote 3

ELIZABETH EDWARDS
Metagenomics of Microbial Dechlorinating Consortia

Location: Frye Auditorium
3:00 pm 3:30 pm Coffee break
Location: 1st Floor Foyer
3:30 pm 5:00 pm Research Session 5

Location:
Frye Auditorium
Research Session 6

Location: VC 213
3:30 pm 4:00 pm TOPIC LEADER:
Dannie Durand

Protein domains and evolution


Location: Frye Auditorium
TOPIC LEADER:
James Wasmuth

Infectious disease


Location:
VC 213
4:00 pm 4:15 pm David Curran, John Gilleard and James Wasmuth
Using phylogenetic instability to identify members of large gene families under adaptive evolution

Location:
Frye Auditorium
Javi Zhang, Asis Khan, Andrea Kennard, Michael E. Grigg and John Parkinson
PopNet: Revealing the Impact of Recombination on Population Structure

Location: VC 213
4:15 pm 4:30 pm Charlotte Darby, Maureen Stolzer and Dannie Durand
Xenolog Classification: Steps toward a Xenolog Conjecture

Location:
Frye Auditorium
Gaston Mazandu, Kayleigh Rutherford, Elsa-Gayle Zekeng, Emile Chimusa and Nicola Mulder
Modeling drug repositioning by leveraging drug-target-disease association datasets: A case study of Ebola virus disease

Location: VC 213
4:30 pm 4:45 pm Shobhit Jain and Gary Bader
Predicting physiologically relevant SH3 domain mediated protein-protein interactions in human

Location:
Frye Auditorium
Alexandre Drouin, Sébastien Giguère, Maxime Déraspe, Mario Marchand, Jacques Corbeil and Franois Laviolette
Set Covering Machines and Reference-Free Genome Comparisons Uncover Predictive Biomarkers of Antibiotic Resistance

Location: VC 213
4:45 pm 4:50 pm Flash Talk:
James Morton, Stefan Freed, Md Nafiz Hamid, Shaun Lee and Iddo Friedberg

Mining for new antimicrobial agents: predicting bacteriocin gene blocks

Location:
Frye Auditorium
Flash Talk:
Pingchuan Li, Sylvie Cloutier and Frank You

RGAugury: A pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

Location: VC 213
4:50 pm 4:55 pm Flash Talk:
Yanbin Yin and Alex Ekstrom

ORFanFinder: automated identification of taxonomically restricted orphan genes

Location:
Frye Auditorium
Flash Talk:
Rajeev Azad, Mehul Jani and Kalai Mathee

Identification of novel genomic islands in Liverpool epidemic strain of Pseudomonas aeruginosa using segmentation and clustering

Location: VC 213
4:55 pm 5:30 pm Free Time / Dinner on Own
5:30 pm 7:00 pm Discussion Forum for Canadian Investigators

Location:  Room 115
5:30 pm 9:30 pm Workshop 5
Hands-on workshop on Machine Learning with Applications to Bioinformatics

Ivan Kryukov & Jeff Wintersinger

Location: VC 215
5:30 pm 7:00 pm Workshop 6
Exploring and Refining Core Competencies for Bioinformatics
(ISCB Curriculum Task Force
)

Lonnie Welch, Michelle Brazas, & Russell Schwart

Location: VC 213
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WEDNESDAY – DAY 3 – May 18, 2016
START TIME END TIME SESSION TYPE
8:30 am 6:00 pm Registration
Location: 1st Floor Foyer
9:00 am 10:00 am Keynote 4

MATHIEU BLANCHETTE
Know thy ancestors to know thyself: Improving our understanding of the human genome using paleogenomics

Location: Frye Auditorium
10:00 am 10:30 am Coffee break
Location: 1st Floor Foyer
10:30 am 12:20 pm Research Session 7

Location:
Frye Auditorium
Research Session 8

Location: VC 213
10:30 am 11:00 am TOPIC LEADER:
Guillaume Bourque
Genome analysis

Location:
Frye Auditorium
TOPIC LEADER:
Amy Caudy

Metabolomics and Chemoinformatics

Location: VC 213
11:00 am 11:20 am Paper:
Zachary Stephens, Matthew Hudson, Liudmila Mainzer, Morgan Taschuk, Matthew Weber and Ravishankar Iyer

Simulating Next-Generation Sequencing Datasets From Empirical Mutation and Sequencing Models

Location:
Frye Auditorium
Paper:
Miroslava Cuperlovic-Culf, Nandhakishore Rajagopalan, Dan Tulpan and Michele Loewen

Metabolomics and Cheminformatics analysis guiding the Discovery of Antifungal Metabolites for Crop Protection

Location: VC 213
11:20 am 11:40 am Paper:
Daniel Sanchez-Taltavull, Parameswaran Ramachandran, Nelson Lau and Theodore Perkins

Bayesian Correlation Analysis for Sequence Count Data

Location:
Frye Auditorium
 
11:20 am 11:35 am   Yin Lu, Yi-Cheng Tu and Feng Cheng
A novel algorithm for analyzing drug-drug interactions from MEDLINE literature

Location: VC 213
11:35 am 11:50 am   Zhaleh Safikhani, Benjamin Haibe-Kains, Kelsie Thu, Petr Smirinov, David Cescon and Mathieu Lupien
Meta-analysis of large pharmacogenomics studies to develop isoform-based biomarkers predictive of response to targeted therapies

Location: VC 213
11:40 am 11:55 am Greg Gloor, Jean Megan Macklaim and Jia Wu
CoDaSeq: compositional data analysis for high throughput sequencing data

Location:
Frye Auditorium
 
11:50 am 12:05 pm   Seyed Ali Madani Tonekaboni, Zhaleh Safikhani and Benjamin Haibe-Kains
In-silico pipeline for tissue-specific drug combination discovery

Location: VC 213
11:55 am 12:10 pm Davide Chicco and Michael M. Hoffman
Distal chromatin loop prediction with deep siamese neural networks

Location:
Frye Auditorium
 
12:05 pm 12:15 pm   Jiun Yen, Glenda Gillaspy and Ryan Senger
A genome-scale algorithmic approach for metabolic engineering of plants
12:10 pm 12:15 pm Flash Talk:
Musaddeque Ahmed, Haiyang Guo and He Housheng

Integrative analysis for identification and functional prediction of long non-coding RNAs in cancer

Location:
Frye Auditorium
 
12:15 pm 12:20 pm Flash Talk:
Armin Rouhi, Janneke Wit and James Wasmuth
Investigating the usefulness of long-read sequencing technologies on the study of large eukaryotic gene families

Location:
Frye Auditorium
 
12:30 pm 2:00 pm Poster Session B with lunch
Location: Alumni Hall
2:00 pm 3:00 pm Keynote 5

CHRISTINA LESLIE
Decoding gene regulatory programs in cellular differentiation

Location: Frye Auditorium
3:00 pm 3:30 pm Coffee break
Location: 1st Floor Foyer
3:30 pm 5:30 pm Workshop 7
Next generation sequencing


Adam Rosebrock

>>Sign up here<<

Location: 115
3:30 pm 5:30 pm Research Session 9

Location:
Frye Auditorium
Research Session 10

Location: VC 213
3:30 pm 4:00 pm TOPIC LEADER:
Sushmita Roy

Biological networks

Location:
Frye Auditorium
TOPIC LEADER:
Rob Beiko

Metagenomics


Location: VC 213
4:00 pm 4:20 pm Paper:
Matthew O'Meara, Sara Ballouz, Brian Shoichet and Jesse Gillis
Ligand similarity complements sequence, physical interaction, and co-expression for gene function prediction

Location:
Frye Auditorium
Paper:
Ruth G. Wong, Jia R. Wu and Gregory B. Gloor
Expanding the UniFrac toolbox

Location: VC 213

4:20 pm 4:35 pm Bundalovic-Torma and John Parkinson
Biological Interaction Networks in Bacteria - Generation and Evolutionary Insights

Location:
Frye Auditorium
 
4:20 pm 4:40 pm   Paper:
Ahmed Metwally, Yang Dai, Patricia Finn and David Perkins
WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences

Location: VC 213
4:35 pm 4:50 pm Li Zhu, Ying Ding, Cho-Yi Chen, Zhiguang Huo, Sunghwan Kim, Steffi Oesterreich and George Tseng
MetaDCN: meta-analysis framework for differential coexpression network detection with an application in breast cancer

Location:
Frye Auditorium
 
4:40 pm 4:55 pm   Frederic Raymond, Maxime Déraspe, Sébastien Boisvert, Alexander Culley, Paul H. Roy, François Laviolette and Jacques Corbeil
Ray Surveyor: phenetic comparison of genomes and its application in microbial evolution

Location: VC 213
4:50 pm 5:05 pm Lu Cheng and Mu Zhu
Compositional Epistasis Detection Using A Few Prototype Disease Models

Location:
Frye Auditorium
 
4:55 pm 5:10 pm   Jean Megan Macklaim, Amy McMillan, Mark Sumarah, Jonathan Swann, Gregor Reid and Greg Gloor
Insights into the metatranscriptome and metabolome of the vaginal microbiome

Location: VC 213
5:05 pm 5:20 pm Robin Haw
Reactome Revolutions - Pathways and Networks

Location:
Frye Auditorium
 
5:10 pm 5:25 pm   Michael Hall, Jonathan Perrie and Robert Beiko
Time-series clustering enables the exploration of temporal patterns in marker gene data

Location: VC 213
5:20 pm 5:25 pm Flash Talk:
Bahram Samanfar, Andrew Schoenrock, Frank Dehne, Ashkan Golshani, Elroy Cober, Martin Charette and Steve Molnar
PIPE (Protein-protein Interaction Prediction Engine): A computational approach for comprehensive soybean functional genomics

Location:
Frye Auditorium
 
5:30 pm 6:00 pm Free Time
6:00 pm 9:00 pm Banquet with Keynote 6

ALED EDWARDS

Open science: From computational biology to the real world

Location: Burwash Hall
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THURSDAY – DAY 4 – May 19, 2016
START TIME END TIME SESSION TYPE
8:30 am 3:00 pm Registration
Location: 1st Floor Foyer
9:00 am 10:00 am Keynote 7

JANE CARLTON
Harnessing genomics to study the global public health burden of malaria

Location: Frye Auditorium
10:00 am 10:30 am Coffee break
Location: 1st Floor Foyer
10:30 pm 12:00 pm Workshop 8
Computational approaches to synthetic biology


Cathy Su, Esther Jang, Alexander Sullivan (iGEM Toronto)

>>Sign up here<<

Location: VC 115
10:30 am 12:00 pm Research Session 11

Location:
Frye Auditorium
Research Session 12

Location: VC 213
10:30 am 11:00 am TOPIC LEADER:
Carlos Camacho

Structural biology

Location:
Frye Auditorium
TOPIC LEADER:
Igor Jurisica

Integrative data analysis

Location: VC 213
11:00 am 11:20 am Flash Talk:
Eric Stahlberg, Carl McCabe and George Zaki

High-Performance and Exascale Computing Frontiers in Cancer Applications

Location:
Frye Auditorium
Cancelled
Paper:

Sumaiya Iqbal and Md Tamjidul Hoque
Estimation of Free Energy Contribution of Protein Residues as Feature for Structure Prediction from Sequence

Location:
Frye Auditorium
11:00 am 11:15 am   Fazle Faisal, Yuriy Hulovatyy, Huili Chen and Tijana Milenkovic
Dynamic and integrative biological network research of aging

Location: VC 213
11:15 am 11:30 am   Hamed Najafabadi, Pouria Jandaghi, Shraddha Solanki, Andreas Papadakis, Maryam Safisamghabadi, Cristina Storoz, Mark Lathrop, Sidong Huang, Simon Tanguay, Fadi Brimo and Yasser Riazalhosseini
A regulatory model for discovering aberrant post-transcriptional programs in cancer

Location: VC 213
11:20 am 11:35 am Devashish Das, Pravin Kumar, Naveen Kulkarni and Anurag Kumar
A novel atomistic motional correlation method combined with thermodynamics to delineate the intricate mechanism of substrate specific catalysis: enzyme engineering perspective

Location:
Frye Auditorium
 
11:30 am 11:45 am

Heather Wheeler, Kaanan Shah, Jonathon Brenner and Hae Kyung Im
Survey of the Heritability and Sparsity of Gene Expression Traits Across Human Tissues

Location: VC 213
11:35 am 11:50 am Frazier Baker and Alexey Porollo
Prediction of Metal Binding Sites in Proteins Using Coevolution Data

Location:
Frye Auditorium
 
11:45 am 12:00 pm   Christian Wiwie, Jan Baumbach and Richard Röttger
On the clustering of biomedical datasets - a data-driven perspective

Location: VC 213
11:50 am 11:55 am Flash Talk:
Nehme El-Hachem, Deena Gendoo, Benjamin Haibe-Kains
Decoding compound mechanism of action using integrative pharmacogenomics

Location:
Frye Auditorium
 
12:00 pm 1:00 pm Lunch on own
1:00 pm 2:00 pm Research Session 13

Location:
Frye Auditorium
Research Session 14

Location: VC 213
1:00 pm 1:30 pm TOPIC LEADER:
Mads Kaern
Dynamic systems modeling


Location:
Frye Auditorium
TOPIC LEADER:
Belinda Chang
Phylogenetics


Location: VC 213
1:30 pm 1:50 pm Paper:
Joachim von Wulffen, Oliver Sawodny and Ronny Feuer
Balancing mRNA and Protein Levels in a Demand-Directed Dynamic Flux Balance Analysis Describes Effects of the Transition of an Anaerobic Escherichia coli Culture to Aerobic Conditions

Location:
Frye Auditorium
 
1:30 pm 1:45 pm   Ivan Kryukov, Bianca de Sanctis and A.P. Jason de Koning
Efficient techniques for direct analysis of discrete-time population genetic models

Location: VC 213
1:45 pm 2:00 pm   Maureen Stolzer and Dannie Durand
How plastic are multidomain proteins? Quantifying domain co-evolution in primate genomes

Location: VC 213
2:00 pm 3:00 pm Keynote 8

TIMOTHY HUGHES

Decoding Gene Regulation

Location: Frye Auditorium
3:00 pm 3:15 pm Closing Ceremonies
Location: Frye Auditorium
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