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BioVis COSI Track Presentations

Opening
Date: Monday, July 24
Time: 10:00 AM - 10:15 AM
Room: Hall 4
  • Jan Aerts, KU Leuven, Belgium

Presentation Overview: Show

Opening remarks for BioVis 2017

[Invited talk] Visual Analytics for spatial transcriptomics: from single cell to tissue and back
Date: Monday, July 24
Time: 10:15 AM - 11:00 AM
Room: Hall 4
  • Boudewijn P.F. Lelieveld, Leiden University Medical Center, Netherlands
[Paper] Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies
Date: Monday, July 24
Time: 11:00 AM - 11:20 AM
Room: Hall 4
  • Marwan Abdellah, Blue Brain Project / EPFL, Switzerland
  • Juan Hernando, Blue Brain Project / EPFL, Switzerland
  • Nicolas Antille, Blue Brain Project / EPFL, Switzerland
  • Stefan Eilemann, EPFL / Blue Brain Project, Switzerland
  • Henry Markram, Blue Brain Project / EPFL, Switzerland
  • Felix Schürmann, Blue Brain Project / EPFL, Switzerland
[Highlight] BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome
Date: Monday, July 24
Time: 11:20 AM - 11:40 AM
Room: Hall 4
  • Sjoerd M. H. Huisman, Delft University of Technology, Netherlands
  • Baldur Lew, Leiden University Medical Center, Netherlands
  • Ahmed Mahfouz, Leiden University Medical Center, Netherlands
  • Nicola Pezzotti, Delft University of Technology, Netherlands
  • Thomas Höllt, Delft University of Technology, Netherlands
  • Lieke Michielsen, Delft University of Technology, Netherlands
  • Anna Vilanova, Delft University of Technology, Netherlands
  • Marcel Reinders, Delft University of Technology, Netherlands
  • Boudewijn P.F. Lelieveldt, Leiden University Medical Center, Netherlands
[Highlight] AnimoAminoMiner: exploration of protein tunnes ald their properties in molecular dynamics
Date: Monday, July 24
Time: 11:40 AM - 12:00 AM
Room: Hall 4
  • Jan Byška, University of Bergen, Norway
  • Mathieu Le Muzic, TU Wien, Austria
  • M. Eduard Gröller, TU Wien, Austria
  • Ivan Viola, TU Wien, Austria
  • Barbora Kozlíková, Masaryk University, Czech Republic
[Paper] CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components
Date: Monday, July 24
Time: 12:00 AM - 12:20 PM
Room: Hall 4
  • Henry Heberle, University of São Paulo, Brazil
  • Marcelo Falsarella Carazzolle, University of Campinas, Brazil
  • Guilherme Pimentel Telles, University of Campinas, Brazil
  • Gabriela Vaz Meirelles, Biosciences National Laboratory, Brazil
  • Rosane Minghim, University of São Paulo, Brazil
[Poster] Rondo: interactive visual exploration of genome spatial connectivity
Date: Monday, July 24
Time: 12:20 PM - 12:25 PM
Room: Hall 4
  • Benedetta Frida Baldi, The Garvan Institute of Medical Research, Australia
  • Kenny Sabir, The Garvan Institute of Medical Research, Australia
  • Sean O'Donoghue, The Garvan Institute of Medical Research, Australia
[Poster] Visualization and creation of biochemical networks with Escher
Date: Monday, July 24
Time: 12:25 PM - 12:30 PM
Room: Hall 4
  • Zachary A King, Department of Bioengineering, University of California, San Diego, United States
  • James T Yurkovich, Department of Bioengineering, University of California, San Diego, United States
  • Andreas Dräger, Center for Bioinformatics Tübingen (ZBIT), University of Tübingen, Germany
  • Ali Ebrahim, Department of Bioengineering, University of California, San Diego, United States
  • Nikolaus Sonnenschein, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Denmark
  • Nathan E. Lewis, Department of Pediatrics, University of California, San Diego, La Jolla, California, United States of America, United States
  • Bernhard O. Palsson, Department of Bioengineering and Department of Pediatrics, University of California, San Diego, La Jolla, California, United States of America, United States
[Invited talk] Just a tool, or a science? The role of visualization in biology
Date: Monday, July 24
Time: 2:00 PM - 2:45 PM
Room: Hall 4
  • Miriah Meyer, School of Computing, University of Utah, United States
[Paper] Vermont: multi-perspective visual interactive platform for mutational analysis
Date: Monday, July 24
Time: 2:45 PM - 3:05 PM
Room: Hall 4
  • Alexandre Fassio, UFMG, Brazil
  • Pedro Martins, UFMG, Brazil
  • Samuel Guimarães, UFV, Brazil
  • Sócrates Araújo Júnior, UFV, Brazil
  • Vagner Ribeiro, UFV, Brazil
  • Raquel de Melo-Minardi, UFMG, Brazil
  • Sabrina Silveira, UFV, Brazil
[Highlight] MUTAFRAME - a data visualization platform for mutation effect prediction
Date: Monday, July 24
Time: 3:05 PM - 3:25 PM
Room: Hall 4
  • Ibrahim Tanyalcin, Vrije Universiteit Brussel, Belgium
  • Julien Ferte, Vrije Universiteit Brussel, France
  • Daniele Raimondi, Vrije Universiteit Brussel, Belgium
  • Gabriele Oranlando, Vrije Universiteit Brussel, Belgium
  • Andrea Gazzo, Vrije Universiteit Brussel, Belgium
  • Tom Lenaerts, Vrije Universiteit Brussel, Belgium
  • Marianne Rooman, ULB, Belgium
  • Wim Vranken, Vrije Universiteit Brussel, Belgium
[Highlight] RPAN: rice pan-genome browser for ~3,000 rice genomes
Date: Monday, July 24
Time: 3:25 PM - 3:45 PM
Room: Hall 4
  • Chaochun Wei, Shanghai Jiao Tong University, China
  • Chen Sun, Shanghai Jiao Tong University, China
  • Zhiqiang Hu, Shanghai Jiao Tong University, China
  • Tianqing Zheng, Chinese Academy of Agricultural Sciences, China
  • Kuangchen Lu, Shanghai Jiao Tong University, China
  • Yue Zhao, Shanghai Jiao Tong University, China
  • Wensheng Wang, Chinese Academy of Agricultural Sciences, China
  • Jianxin Shi, Shanghai Jiao Tong University, China
  • Dabing Zhang, Shanghai Jiao Tong University, China
  • Jinyuan Lu, Shanghai Jiao Tong University, China
  • Zhikang Li, Chinese Academy of Agricultural Sciences, China
[Poster] Systems-level interactive data exploration (SLIDE): user-driven visualization of large-scale omics data on a web browser with flexible customized graphics
Date: Monday, July 24
Time: 3:45 PM - 3:50 PM
Room: Hall 4
  • Soumita Ghosh, National University of Singapore, Singapore
  • Abhik Datta, National University of Singapore, Singapore
  • Hyungwon Choi, National University of Singapore, Singapore
[Poster] Interactive pangenome visualization using variant graphs
Date: Monday, July 24
Time: 3:50 PM - 3:55 PM
Room: Hall 4
  • Simon Heumos, University of Tübingen, Germany
  • Björn Geigle, Computomics GmbH, Germany
  • Theodore R Gibbons, Computomics GmbH, Germany
  • Jörg Hagmann, Computomics GmbH, Germany
  • Sebastian J Schultheiss, Computomics GmbH, Germany
  • Verana JW Schünemann, University of Tübingen, Germany
  • Daniel Huson, University of Tübingen, Germany
[Paper] Bayesian unidimensional scaling for visualizing uncertainty in high dimensional datasets with latent ordering of observations
Date: Monday, July 24
Time: 4:30 PM - 4:50 PM
Room: Hall 4
  • Lan Huong Nguyen, Stanford University, United States
  • Susan Holmes, Stanford University, United States
[Paper] MediSyn: uncertanty-aware visualization of multiple biomedical datasets to support drug treatment selection
Date: Monday, July 24
Time: 4:50 PM - 5:10 PM
Room: Hall 4
  • Chen He, Department of Computer Science, University of Helsinki, Finland
  • Luana Micallef, Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Finland
  • Zia-Ur-Rehman Tanoli, Institute for Molecular Medicine Finland, University of Helsinki, Finland
  • Samuel Kaski, Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Finland
  • Tero Aittokallio, Institute for Molecular Medicine Finland, University of Helsinki, Finland
  • Giulio Jacucci, Department of Computer Science, University of Helsinki, Finland
[Paper] C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search
Date: Monday, July 24
Time: 5:10 PM - 5:30 PM
Room: Hall 4
  • Divya Tej Sowpati, Centre for Cellular and Molecular Biology, India
  • Surabhi Srivastava, Centre for Cellular and Molecular Biology, India
  • Jyotsna Dhawan, Centre for Cellular and Molecular Biology, India
  • Rakesh Mishra, Centre for Cellular and Molecular Biology, India
[Poster] Overcoming the visualization challenges of pE-MAP results
Date: Monday, July 24
Time: 5:30 PM - 5:35 PM
Room: Hall 4
  • John H Morris, UCSF, United States
  • Stefan Bohn, UCSF, United States
[Poster] Extending R gplots Venn diagrams with polyominoes for 6 and 7 dimensions and an unconstrained graph representation
Date: Monday, July 24
Time: 5:35 PM - 5:40 PM
Room: Hall 4
  • Sarah O Fisher, IBIMA, Germany
  • Georg Fuellen, IBIMA, Germany
  • Steffen Möller, IBIMA, Germany
Closing remarks
Date: Monday, July 24
Time: 5:40 PM - 6:00 PM
Room: Hall 4
  • Marc Streit, Johannes Kepler University Linz, Austria