Leading Professional Society for Computational Biology and Bioinformatics
Connecting, Training, Empowering, Worldwide

banner

SysMod COSI Track Presentations

Modeling in uncertain times
Date: Saturday, July 22
Time: 10:00 AM - 10:50 AM
Room: Panorama
  • Rainer Breitling, University of Manchester, UK
A scalable moment-closure approximation for large-scale biochemical reaction networks
Date: Saturday, July 22
Time: 10:50 AM - 11:10 AM
Room: Panorama
  • Atefeh Kazeroonian, Technische Universität München, Germany
  • Fabian Theis, Helmholtz-Zentrum München, Germany
  • Jan Hasenauer, Helmholtz-Zentrum München, Germany
Efficient Simulation of Intrinsic, Extrinsic and External Noise in Biochemical Systems
Date: Saturday, July 22
Time: 11:10 AM - 11:30 AM
Room: Panorama
  • Dennis Pischel, Otto-von-Guericke University Magdeburg, Germany
  • Kai Sundmacher, Max Planck Institute for Dynamics of Complex Technical Systems, Germany
  • Robert J. Flassig, Max Planck Institute for Dynamics of Complex Technical Systems, Germany
Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data
Date: Saturday, July 22
Time: 11:30 AM - 11:50 AM
Room: Panorama
  • Eugenio Cinquemani, INRIA Grenoble - Rhone-Alpes, France
  • Valérie Laroute, Universite de Toulouse, France
  • Muriel Cocaign-Bousquet, INRIA, France
  • Hidde de Jong, INRIA Grenoble - Rhone-Alpes, France
  • Delphine Ropers, INRIA Grenoble - Rhone-Alpes, France
Reversed dynamics to uncover basins of attraction of asynchronous logical models
Date: Saturday, July 22
Time: 11:50 AM - 12:10 PM
Room: Panorama
  • Sébastien Fueyo, Instituto Gulbenkian de Ciência / INRIA Sophia Antipolis, France
  • Pedro T. Monteiro, INESC-ID/IST, Universidade de Lisboa, Portugal
  • Aurélien Naldi, IBENS (CNRS UMR 8197 - INSERM U1024), France
  • Julien Dorier, Vital-IT, Systems biology and medicine department, SIB Swiss Institute of Bioinformatics, Switzerland
  • Élisabeth Remy, Aix Marseille Université, CNRS, Centrale Marseille, I2M, UMR 7373, France
  • Claudine Chaouiya, Instituto Gulbenkian de Ciência, Portugal
Computational modeling of promoter occupancies in MYC-dependent gene regulation
Date: Saturday, July 22
Time: 2:00 PM - 2:50 PM
Room: Panorama
  • Jana Wolf, Max Delbrück Center for Molecular Medicine, Germany
Manatee invariants for functional analysis of signaling pathways in complex networks
Date: Saturday, July 22
Time: 2:50 PM - 3:10 PM
Room: Panorama
  • Ina Koch, Johann Wolfgang Goethe-University, Germany
Large Scale Mechanistic Modeling Enables Robust Prediction of Cancer Cell Drug Response
Date: Saturday, July 22
Time: 3:10 PM - 3:30 PM
Room: Panorama
  • Fabian Fröhlich, Helmholtz-Zentrum München, Germany
  • Alexey Shadrin , Germany
  • Thomas Kessler , Germany
  • Christoph Wierling , Germany
  • Bodo Lange , Germany
  • Fabian Theis , Germany
  • Hans Lehrach , Germany
  • Jan Hasenauer, Helmholtz-Zentrum München, Germany
Incorporating patient-specific molecular data into a logic model of prostate cancer
Date: Saturday, July 22
Time: 3:30 PM - 3:50 PM
Room: Panorama
  • Pauline Traynard, Institut Curie, France
  • Jonas Beal, Institut Curie, France
  • Emmanuel Barillot, Institut Curie, France
  • Luis Tobalina , Germany
  • Julio Saez-Rodriguez , Germany
  • Laurence Calzone, Institut Curie, France
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis
Date: Saturday, July 22
Time: 4:30 PM - 4:50 PM
Room: Panorama
  • Chiara Damiani, Dept of Informatics, Systems and Communication, University Milano-Bicocca, 20126, Milano, Italy
  • Marzia Di Filippo, Dept of Biotechnology and Biosciences, University Milano-Bicocca, 20126, Milano, Italy
  • Dario Pescini, Dept of Statistics and Quantitative Methods, University Milano-Bicocca, 20126, Milano, Italy
  • Davide Maspero, Dept of Biotechnology and Biosciences, University Milano-Bicocca, 20126, Milano, Italy
  • Riccardo Colombo, Dept of Informatics, Systems and Communication, University Milano-Bicocca, 20126, Milano, Italy
  • Giancarlo Mauri, Dept of Informatics, Systems and Communication, University Milano-Bicocca, 20126, Milano, Italy
Who's driving? Cell cycle robustness investigated by a multi-scale framework integrating cell cycle and metabolism in budding yeast
Date: Saturday, July 22
Time: 4:50 PM - 5:10 PM
Room: Panorama
  • Matteo Barberis, Universiteit van Amsterdam, Netherlands
  • Lucas van der Zee, Synthetic Systems Biology and Nuclear Organization, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
  • Thierry D.G.A. Mondeel, Synthetic Systems Biology and Nuclear Organization, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
  • Hans V. Westerhoff, Synthetic Systems Biology and Nuclear Organization, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
Explanation of drug effects using a mechanistic model automatically assembled from natural language, databases, and literature
Date: Saturday, July 22
Time: 5:10 PM - 5:30 PM
Room: Panorama
  • John A. Bachman, Harvard Medical School, United States
  • Benjamin M. Gyori , United States
  • Peter K. Sorger , United States
Tracking and Engineering the Evolution of Organismal Fitness via Multi-Organism mRNA Translation Whole Cell Simulations
Date: Saturday, July 22
Time: 5:30 PM - 5:50 PM
Room: Panorama
  • Tamir Tuller, Tel Aviv University, Israel
  • Hadas Zur, Tel Aviv University, Israel