Sponsors

Jamshed Khan, University of Meryland
Cuttlefish: Fast, parallel, and low-memory compaction of de Bruijn graphs from large-scale genome collections

 

Tsukasa Nakamura, JSPS(PD)/Tohoku University
Towards protein interface prediction using SE(3)-Transformer

Hideki Yamaguchi, The University of Tokyo
Evotuning protocols for Transformer-based variant effect prediction on multi-domain proteins

 

Paulina Szymczak, Uniwersytet Warszawski
HydrAMP: a deep generative model for antimicrobial peptide discovery

Trey Ideket, University of California, San Diego
Building the Mind of Cancer

 

Christopher Burge, MIT
Hunting for functional genetic variants in human 3' UTR

Tiago Lubiana, University of Sao Paulo
Wikidata for 5-star Linked Open Databases: a case study of PanglaoDB

Sanya Taneja, University of Pittsburgh
Designing potential extensions from G-SRS to ChEBI to identify natural product-drug interactions

Grammer-Based Interactive Visualization of Genomics Data
Sehi L'Yi, Qianwen Wang, Fritz Lekschas, and Nils Gehlenborg

 

Loon: Using Exemplars to Visualize Large Scale Microscopy Data
Devin Lange, Eddie Polacno, Robert Judson-Torres, Thomas Zangle, and Alexander Lex

RuleBender: Integrated visualization for biochemical rule-based modeling
Adam M Smith, Wen Xu, Yao Sun, James R Faeder, G. Elisabeta Marai

Gonghua Li, Chinese Academy of Sciences & Massachusetts Gneral Hospital
Targeting the hsot response in COVID-19 by integeration of metabolic modeling and cheminformatics

 

Xianghao Zhan, Stanford University
Filter Drug-induced Liver Injury (DILI) Literature with Natural Langauage Processing and Ensemble Learning

 

Dimatar Vassilev, Sofia University
Discovering relationship between bacteriophages and antimicrobial resistance

Ayse Dincer
Inferring peptide coefficients from quantitative mass spectrometery data

Sven Giese
millipede - A Deep Learning Library to Predict the Entire Mass Spectrometery Life Cycle of Proteins and Peptide

Elise Parey
Combining synteny and sequence-based approaches to investigate genome evolution after polyploidization

Day 1: Salvatore Cosentino
SonicParanoid2: Machine Learning-Driven Integration of Bidirectional Best Hit and Protein Domain Analysis for Faster and More Accurate Othology

 

Day 2: Conor Walker
Accurate detection of interspecific positive selection using convolutional neural networks

 

Vignesh Sridhar, Karn Jongnarangsin, Arjun Krishnan, and Janani Ravi
Developing a machine learning approach to determine gene/protein features to classify bacterial groups

 

Elliot Majlessi, Neal Hammer, and Janani Ravi
Evolution of Staphylococcal Antibiotic Resistance Systems Across Gram-Positive Bacteria

David Wang, University of Pennsylvania
Alternative Splicing Based Classification of Heterogeneous Cancers Reveals Novel Disease Subtypes

Olga Lazareva, Technical University of Munich
On the limits of active module identification

Lisa Rottjers, KU Leuven
Fast and flexible analysis of linked microbiome data with mako

Automated whole-cell modeling from genomic sequence and multi-omics data
Kazunari Kaizu, Kozo Nishida, and Koichi Takashi

 

An agent-based model of tumour-associated macrophage differentiation in chronic lymphocytic leukaemia
Nina Verstraete, Malvina Marku, Helene Arduin, Marcin Domagal, Jean Jacques Fournie, Loic Ysebaert, Mary Poupot, and Vera Pancaldi

 

Boolean Network Inference at Different Levels of Logical Complexity
Eline S. van Mantgem, Gunnar W. Klau, and Heinrich Heine

 

Simulating drug effects on whole-cell level simulation
Bence Keomley-Horvath, Attila Czikasz-Nagy, Istvan Reguly, and Pazmany Peter

Marius Herr, University Hospital Tubingen & University of Tubingen
Bringing the algorithms to the Data - Secure Distributed Medical Analytics using the Personal Health Train

 

Riya Gupta, Khatri Labs, Stanford University
Formulating a Gene Signature for Diagnosis of Autoimmune and Infectious Diseases

 

Yun Hao, University of Pannsylvania
A novel feature selection pipeline for identifying predictive targets associated with drug toxicity

Juan Jenao, Institute of Computational Biology, Biology Helmholtz-Zentrum Munchen
Identifying Dysfunctional Mechanisms of Pancreas-residing T-cells in Islet Autoimmunity Through Single-cell Immune Profiling

 

Mark Wappett, Queens University
SynLeGG; analysis and visualization of multiomics data for discovery of cancer 'Achilles Heels' and gene function relationships

 

Hammad Iqbal, Precision Medicine Lab
The wearables for wellness pilot: data-enabled primary care in an LMIC context